|
These datas are free for academic use only, please contact me for any other use. Anopheles gambiae see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_4648#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 2 consensus length = 783 fasta sequence
[CCGACGCAATGGACCGCTGGATCGGAAAAGTGGCGATCGTAACCGGTGCAAGCTCCGGCATTGGTGCAACCGCTGTGAAAGCCCTTGCCACCGCCGGCATGGTTGTGATCGGACTGGCACGCCGTGCCGAACGTGTTCTGGAGCTGAAGAAAAGTGTCCCACCGGAAGTGGCGCACCGAATACACTCCCACCGCTGTGATGTGACCAGTGAGCAATCGATAGTGGACGCTTTTGCGCTGATCGATCATCAGTTTGGCGGTGTGGACGTGCTGATCAACAATGCCGGTGTGTCGAAACTGACCTGCACGCTGCTGACGGCGGGCAATGGGGCAGACTTACGCACGGTACTGGACACGAACGTGATGGGTCTGGTGCTGTGCAGTCGCGAGGCATTCCAGTCGATGAAGCGCCGCTCGATCGATGGCCATATCGTGAACATTAACAGCATCCTCGGCCACAAGTACATCGGCTTTCCGAACCTAAACATCTACGGTGCATCCAAGTATGCCGTTACCGCGATTACGGAAACGTTGCGCAATGACCTGCGCAACGAAGGTACGCGGGTGAAGGTTACGAGCATCAGCCCGGGCATCGTGCGGACGGAGATGGTCCCGGAGGGTGACCAGTTTCAAGATACGCCCATGCTGGAGGCGGACGATGTTGTCGGTGCGATTCTGTATGCGCTCGGGACGCCTCCTCATTTGCAGGTGCACGAGGTTATCATCAAGCCGGTGGGCGAAATGAATTGAATTCAAAACAAGTTGTCTCTTTTCATCAACAATC]
[+] EMBL BM651687 [CCGACGCAATGGACCGCTGGATCGGAAAAGTGGCGATCGTAACCGGTGCAAGCTCCGGCATTGGTGCAACCGCTGTGAAAGCCCTTGCCACCGCCGGCATGGTTGTGATCGGACTGGCACGCCGTGCCGAACGTGTTCTGGAGCTGAAGAAAAGTGTCCCACCGGAAGTGGCGCACCGAATACACTCCCACCGCTGTGATGTGACCAGTGAGCAATCGATAGTGGACGCTTTTGCGCTGATCGATCATCAGTTTGGCGGTGTGGACGTGCTGATCAACAATGCCGGTGTGTCGAAACTGACCTGCACGCTGCTGACGGCGGGCAATGGGGCAGACTTACGCACGGTACTGGACACGAACGTGATGGGTCTGGTGCTGTGCAGTCGCGAGGCATTCCAGTCGATGAAGCGCCGCTCGATCGATGGCCATATCGTGAACATTAACAGCATCCTCGGCCACAAGTACATCGGCTTTCCGAACCTAAACATCTACGGTGCATCCAAGTATGCCGTTACCGCGATTACGGAAACGTTGCGCAATGACCTGCGCAACGAAGGTACGCGGG ]
[+] EMBL BX621232 [ CGATCGTAACCGGTGCAAGCTCGGGCATTGGTGCAACGGCAGTGAAAGCTCTAGCCACCGCCGGCATGGTCGTGATCGGACTGGCACGCCGTGCCGAGCGTGTTCTGGAGCTGAAGAAAACTGTCCCACCGGAAGTGGCACACCGAATACACTCCCACCGCTGTGATGTGACCAGTGAGCAATCGATAGTGGACGCTTTTGCGCTGATCGATCATCAGTTTGGCGGTGTGGACGTGCTGATCAACAATGCCGGTGTGTCGAAACTGACCTGCACGCTGCTGACGGCGGGCAATGGGGCAGACTTACGCACGGTACTGGACACGAACGTGATGGGTCTGGTGCTGTGCAGTCGCGAGGCATTCCAGTCGATGAAGCGTCGCTCGATCGATGGCCATATCGTGAACATTAACAGCATCCTCGGCCACAAGTACATCGGCTTTCCGAACCTAAACATCTACGGTGCATCCAAGTATGCCGTTACCGCGATAACGGAAACGTTGCGCAATGACCTGCGCAACGAAGGTACGCGGGTGAAGGTTACGAGCATCAGCCCGGGCATCGTGCGGACGGAGATGGTCCCGGAGGGTGACCAGTTTCAAGATACGCCCATGCTGGAGGCGGACGATGTTGTCGGTGCGATTCTGTATGCGCTCGGGACGCCTCCTCATTTGCAGGTGCACGAGGTTATCATCAAGCCGGTGGGCGAAATGAATTGAATTCAAAACAAGTTGTCTCTTTTCATCAACAATC]
consensusID : consensus_4648#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 672 fasta sequence
[AGGCCAGAATCGGCACGATTGCCGGTGCAGCTCGGGCATTGGTGCAACGGCAGTGAAAGCTCTAGCCACCGCCGGCATGGTCGTGATCGGACTGGCACGCCGTGCCGAGCGTGTTCTGGAGCTGAAGAAAACTGTCCCACCGGAAGTGGCACACCGAATACACTCCCACCGCTGTGATGTGACCAGTGAGCAATCGATAGTGGACGCTTTTGCGCTGATCGATCATCAGTTTGGCGGTGTGGACGTGCTGATCAACAATGCCGGTGTGTCGAAACTGACCTGCACGCTGCTGACGGCGGGCAATGGGGCAGACTTACGCACGGTACTGGACACGAACGTGATGGGTCTGGTGCTGTGCAGTCGCGAGGCATTCCAGTCGATGAAGCGTCGCTCGATCGCATGGCCATATCGTGAACATTAACAGCATCCTCGGNCACAAGTACATCGGCTTTCCGAACCTAAAGCATACTACGGGTGCATCCAAGTATAGCCGTTAACCGCGATAACGGAGAACGTTGCGCAATGACCTGCGCAACGAAGGTACGCGGGTTGACANGGGTTTAACAGAAGGCATTCAGGACCCGGGGCAATCCGATGCGGNACGGGAAAGAATAGGTCCCCGGGANGGGTTGACCCAAGTTGATCAACGATTACGGCCCAATGGCTTGGAGA]
[+] EMBL BX467145 [AGGCCAGAATCGGCACGATTGCCGGTGCAGCTCGGGCATTGGTGCAACGGCAGTGAAAGCTCTAGCCACCGCCGGCATGGTCGTGATCGGACTGGCACGCCGTGCCGAGCGTGTTCTGGAGCTGAAGAAAACTGTCCCACCGGAAGTGGCACACCGAATACACTCCCACCGCTGTGATGTGACCAGTGAGCAATCGATAGTGGACGCTTTTGCGCTGATCGATCATCAGTTTGGCGGTGTGGACGTGCTGATCAACAATGCCGGTGTGTCGAAACTGACCTGCACGCTGCTGACGGCGGGCAATGGGGCAGACTTACGCACGGTACTGGACACGAACGTGATGGGTCTGGTGCTGTGCAGTCGCGAGGCATTCCAGTCGATGAAGCGTCGCTCGATCGCATGGCCATATCGTGAACATTAACAGCATCCTCGGNCACAAGTACATCGGCTTTCCGAACCTAAAGCATACTACGGGTGCATCCAAGTATAGCCGTTAACCGCGATAACGGAGAACGTTGCGCAATGACCTGCGCAACGAAGGTACGCGGGTTGACANGGGTTTAACAGAAGGCATTCAGGACCCGGGGCAATCCGATGCGGNACGGGAAAGAATAGGTCCCCGGGANGGGTTGACCCAAGTTGATCAACGATTACGGCCCAATGGCTTGGAGA]
consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment
consensus_4648#0 CCGACGCAATGGACCGCTGGATCGGAAAAGTGGCGATCGTAACCGGTGCAAGCTCCGGCA 60
consensus_4648#1 ------------------AGGCCAGAATCGGCACGATTG---CCGGTGCA-GCTCGGGCA 38
* * *** * **** * ******** **** ****
consensus_4648#0 TTGGTGCAACCGCTGTGAAAGCCCTTGCCACCGCCGGCATGGTTGTGATCGGACTGGCAC 120
consensus_4648#1 TTGGTGCAACGGCAGTGAAAGCTCTAGCCACCGCCGGCATGGTCGTGATCGGACTGGCAC 98
********** ** ******** ** ***************** ****************
consensus_4648#0 GCCGTGCCGAACGTGTTCTGGAGCTGAAGAAAAGTGTCCCACCGGAAGTGGCGCACCGAA 180
consensus_4648#1 GCCGTGCCGAGCGTGTTCTGGAGCTGAAGAAAACTGTCCCACCGGAAGTGGCACACCGAA 158
********** ********************** ****************** *******
consensus_4648#0 TACACTCCCACCGCTGTGATGTGACCAGTGAGCAATCGATAGTGGACGCTTTTGCGCTGA 240
consensus_4648#1 TACACTCCCACCGCTGTGATGTGACCAGTGAGCAATCGATAGTGGACGCTTTTGCGCTGA 218
************************************************************
consensus_4648#0 TCGATCATCAGTTTGGCGGTGTGGACGTGCTGATCAACAATGCCGGTGTGTCGAAACTGA 300
consensus_4648#1 TCGATCATCAGTTTGGCGGTGTGGACGTGCTGATCAACAATGCCGGTGTGTCGAAACTGA 278
************************************************************
consensus_4648#0 CCTGCACGCTGCTGACGGCGGGCAATGGGGCAGACTTACGCACGGTACTGGACACGAACG 360
consensus_4648#1 CCTGCACGCTGCTGACGGCGGGCAATGGGGCAGACTTACGCACGGTACTGGACACGAACG 338
************************************************************
consensus_4648#0 TGATGGGTCTGGTGCTGTGCAGTCGCGAGGCATTCCAGTCGATGAAGCGCCGCTCGATCG 420
consensus_4648#1 TGATGGGTCTGGTGCTGTGCAGTCGCGAGGCATTCCAGTCGATGAAGCGTCGCTCGATCG 398
************************************************* **********
consensus_4648#0 -ATGGCCATATCGTGAACATTAACAGCATCCTCGGCCACAAGTACATCGGCTTTCCGAAC 479
consensus_4648#1 CATGGCCATATCGTGAACATTAACAGCATCCTCGGNCACAAGTACATCGGCTTTCCGAAC 458
********************************** ************************
consensus_4648#0 CTAAA-CAT-CTACGG-TGCATCCAAGTAT-GCCGTTA-CCGCGATTACGGA-AACGTTG 533
consensus_4648#1 CTAAAGCATACTACGGGTGCATCCAAGTATAGCCGTTAACCGCGATAACGGAGAACGTTG 518
***** *** ****** ************* ******* ******* ***** *******
consensus_4648#0 CGCAATGACCTGCGCAACGAAGGTACGCGGGT----GAAGGTT--ACGAGCATCAGCCCG 587
consensus_4648#1 CGCAATGACCTGCGCAACGAAGGTACGCGGGTTGACANGGGTTTAACAGAAGGCATTCAG 578
******************************** **** ** ** * *
consensus_4648#0 GGCATCGTGCGGACGGAGATGGTCCCGGAGGGTGACCAGTTTCAAGATACGCCCATGCTG 647
consensus_4648#1 GACCCGGGGCAATCCGATGCGGNACGGGAAA--GAATAGGTCCCCGGGANGGGTTGACCC 636
* * * ** * ** ** * *** ** ** * * * * * *
consensus_4648#0 GAGGCGGACGATGTTGTCGGTGCGATTCTGTATGCGCTCGGGACGCCTCCTCATTTGCAG 707
consensus_4648#1 AAGTTGATCAACGATTACGGCCCAATGGCTTGGAGA------------------------ 672
** * * * * * *** * ** *
consensus_4648#0 GTGCACGAGGTTATCATCAAGCCGGTGGGCGAAATGAATTGAATTCAAAACAAGTTGTCT 767
consensus_4648#1 ------------------------------------------------------------
consensus_4648#0 CTTTTCATCAACAATC 783
consensus_4648#1 ----------------
|
| Copyright Wed Dec 3 12:11:56 CET 2003 Hubert Wassner (hubert.wassner@noos.fr) | ||||