cluster # 4650

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Anopheles gambiae
cluster # 4650 cluster # 4650 Sequences # 3 consensus # 2

see consensus multiple alignment with clustalw

Direct access to contigs :

consensus_4650#0 length = 784 sequences # 2

consensus_4650#1 length = 186 sequences # 1

consensusID : consensus_4650#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 2
consensus length = 784
fasta sequence

                              [AGCTATAAATGAAGTACTGTGCTGCCGTGGTTGTGCTCCTAGCGCTGGCCGTGTTTGGCCAGAGCGCCTTCGCCGAACAGGTGTCCTACCGAGACTACAAAGTCTACAGCATCCGCGTGGACACGGTGGAGAAGCACAACGTGCTGAAGCGCTGGCAGGATGTGCGCGGGGTCGATTTCTGGGACCGTGCCGGCTACCGTGTGATGATCCATCCGAGCCTGCAGGAAGCGTTCGAGCGGTTCCTGAACCTGAACGCGTTCAGCTACGAGCGCATCATTGAGGATGTGGAAGCCACGATCGAGGCAGAGCGCAAGTACGATCAGGAGTACCGCCGTCGCAAGGCTGCATCCGGTCGGGCTACGGTCGATTTCGAGCACTTCTGGACGAATGCGGAGGTTAATGCGTACCTGGACGAGCTTGCCCAGACGTACCCGAATCTGGTGCGCGTCGCCACGATTGGCACCACTCACGAGGGCCTGTCCGATCAAGTCTGATCACGATCTCGACCAACAATGGTGTGGCTGGATCGAAGCCGGTTGTCTTCATCTGACTGGTGGTATCCATGCACGTGAATGGGCCGGTGTAATGTCGGTGCTCTACTTGATCCACGAGCTGGTGGAACATTCGAGCAGCTACGCCGACATGCTGAACAAGGACTGGGTGATCATTCCCGTCGCCAACCCGGATGGGTACGAGTTCTCGCACACCGACAACGCATGTGGCGCAAGAACCGCTTCCCGGCCACGATCCTCTGTACCGGTATTGATCTGAACCGTAACTGGGA]

[+] EMBL BX624252             [AGCTATAAATGAAGTACTGTGCTGCCGTGGTTGTGCTCCTAGCGCTGGCCGTGTTTGGCCAGAGCGCCTTCGCCGAACAGGTGTCCTACCGAGACTACAAAGTCTACAGCATCCGCGTGGACACGGTGGAGAAGCACAACGTGCTGAAGCGCTGGCAGGATGTGCGCGGGGTCGATTTCTGGGACCGTGCCGGCTACCGTGTGATGATCCATCCGAGCCTGCAGGAAGCGTTCGAGCGGTTCCTGAACCTGAACGCGTTCAGCTACGAGCGCATCATTGAGGATGTGGAAGCCACGATCGAGGCAGAGCGCAAGTACGATCAGGAGTACCGCCGTCGCAAGGCTGCATCCGGTCGGGCTACGGTCGATTTCGAGCACTTCTGGACGAATGCGGAGGTTAATGCGTACCTGGACGAGCTTGCCCAGACGTACCCGAATCTGGTGCGCGTCGCCACGATTGGCACCACTCACGAGGG                                                                                                                                                                                                                                                                                                                     ]
[+] EMBL AL930378             [                                                                                                                                                                                                                                                                                                                                            acgaggtntGCTGCATCCGGTCGGGCTACGGTCGATTTCGAGCACTTCTGGACGAATGCGGAGGTTAATGCGTACCTGGACGAGCTTGCCCAGACGTACCCGAATCTGGTGCGCGTCGCCACGATTGGCACCACTCACGAGGGCCTGTCCGATCAAGTCTGATCACGATCTCGACCAACAATGGTGTGGCTGGATCGAAGCCGGTTGTCTTCATCTGACTGGTGGTATCCATGCACGTGAATGGGCCGGTGTAATGTCGGTGCTCTACTTGATCCACGAGCTGGTGGAACATTCGAGCAGCTACGCCGACATGCTGAACAAGGACTGGGTGATCATTCCCGTCGCCAACCCGGATGGGTACGAGTTCTCGCACACCGACAACGCATGTGGCGCAAGAACCGCTTCCCGGCCACGATCCTCTGTACCGGTATTGATCTGAACCGTAACTGGGA]




>consensus_4650#0
AGCTATAAATGAAGTACTGTGCTGCCGTGGTTGTGCTCCTAGCGCTGGCCGTGTTTGGCC
AGAGCGCCTTCGCCGAACAGGTGTCCTACCGAGACTACAAAGTCTACAGCATCCGCGTGG
ACACGGTGGAGAAGCACAACGTGCTGAAGCGCTGGCAGGATGTGCGCGGGGTCGATTTCT
GGGACCGTGCCGGCTACCGTGTGATGATCCATCCGAGCCTGCAGGAAGCGTTCGAGCGGT
TCCTGAACCTGAACGCGTTCAGCTACGAGCGCATCATTGAGGATGTGGAAGCCACGATCG
AGGCAGAGCGCAAGTACGATCAGGAGTACCGCCGTCGCAAGGCTGCATCCGGTCGGGCTA
CGGTCGATTTCGAGCACTTCTGGACGAATGCGGAGGTTAATGCGTACCTGGACGAGCTTG
CCCAGACGTACCCGAATCTGGTGCGCGTCGCCACGATTGGCACCACTCACGAGGGCCTGT
CCGATCAAGTCTGATCACGATCTCGACCAACAATGGTGTGGCTGGATCGAAGCCGGTTGT
CTTCATCTGACTGGTGGTATCCATGCACGTGAATGGGCCGGTGTAATGTCGGTGCTCTAC
TTGATCCACGAGCTGGTGGAACATTCGAGCAGCTACGCCGACATGCTGAACAAGGACTGG
GTGATCATTCCCGTCGCCAACCCGGATGGGTACGAGTTCTCGCACACCGACAACGCATGT
GGCGCAAGAACCGCTTCCCGGCCACGATCCTCTGTACCGGTATTGATCTGAACCGTAACT
GGGA

consensusID : consensus_4650#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 186
fasta sequence

                              [AGGNGAACACGATCGAGCAGAGCGCAGTCATCAGGGGAAAAAGTTAACCCCCGCGTCGCAAGTGATCGTCGGCTACGTCGATTTCGAGCACTTCTGGACGAATGCGGAGGTTAATGCGTACCTGGACGAGCTTGCCAGACGTTTAAACCCCCCCCCCGGGGAAATCTGGTGCGCGTCCACGATTGG]

[+] EMBL AL932835             [AGGNGAACACGATCGAGCAGAGCGCAGTCATCAGGGGAAAAAGTTAACCCCCGCGTCGCAAGTGATCGTCGGCTACGTCGATTTCGAGCACTTCTGGACGAATGCGGAGGTTAATGCGTACCTGGACGAGCTTGCCAGACGTTTAAACCCCCCCCCCGGGGAAATCTGGTGCGCGTCCACGATTGG]




>consensus_4650#1
AGGNGAACACGATCGAGCAGAGCGCAGTCATCAGGGGAAAAAGTTAACCCCCGCGTCGCA
AGTGATCGTCGGCTACGTCGATTTCGAGCACTTCTGGACGAATGCGGAGGTTAATGCGTA
CCTGGACGAGCTTGCCAGACGTTTAAACCCCCCCCCCGGGGAAATCTGGTGCGCGTCCAC
GATTGG

consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_4650#0      AGCTATAAATGAAGTACTGTGCTGCCGTGGTTGTGCTCCTAGCGCTGGCCGTGTTTGGCC 60
consensus_4650#1      ------------------------------------------------------------
                                                                                  

consensus_4650#0      AGAGCGCCTTCGCCGAACAGGTGTCCTACCGAGACTACAAAGTCTACAGCATCCGCGTGG 120
consensus_4650#1      ------------------------------------------------------------
                                                                                  

consensus_4650#0      ACACGGTGGAGAAGCACAACGTGCTGAAGCGCTGGCAGGATGTGCGCGGGGTCGATTTCT 180
consensus_4650#1      ------------------------------------------------------------
                                                                                  

consensus_4650#0      GGGACCGTGCCGGCTACCGTGTGATGATCCATCCGAGCCTGCAGGAAGCGTTCGAGCGGT 240
consensus_4650#1      ------------------------------------------------------------
                                                                                  

consensus_4650#0      TCCTGAACCTGAACGCGTTCAGCTACGAGCGCATCATTGAGGATGTGGAAGCCACGATCG 300
consensus_4650#1      ---------------------------------------------AGGNGAACACGATCG 15
                                                                    **    ********

consensus_4650#0      AGGCAGAGCGCAAGTACGATCAGGAGTACCGCCGTCGCAAGGCTGCATCCGGTCG--GGC 358
consensus_4650#1      AG-CAGAGCGCAGTCATCAGGGGAAAAAGT-TAACCCCCGCGTCGCAAGTGATCGTCGGC 73
                      ** *********   *  *   * *  *       * *   *  ***   * ***  ***

consensus_4650#0      TACGGTCGATTTCGAGCACTTCTGGACGAATGCGGAGGTTAATGCGTACCTGGACGAGCT 418
consensus_4650#1      TACG-TCGATTTCGAGCACTTCTGGACGAATGCGGAGGTTAATGCGTACCTGGACGAGCT 132
                      **** *******************************************************

consensus_4650#0      TGCCCAGACGTACCCGAATCTGGTGCGCGTCGCCACGATTGGCAC-CACTCACGAGGGCC 477
consensus_4650#1      TGCC-AGACGT--TTAAACCCCCCCCCCGGGG--AAATCTGGTGCGCGTCCACGATTGG- 186
                      **** ******     ** *     * **  *  *    ***  * *   *****  *  

consensus_4650#0      TGTCCGATCAAGTCTGATCACGATCTCGACCAACAATGGTGTGGCTGGATCGAAGCCGGT 537
consensus_4650#1      ------------------------------------------------------------
                                                                                  

consensus_4650#0      TGTCTTCATCTGACTGGTGGTATCCATGCACGTGAATGGGCCGGTGTAATGTCGGTGCTC 597
consensus_4650#1      ------------------------------------------------------------
                                                                                  

consensus_4650#0      TACTTGATCCACGAGCTGGTGGAACATTCGAGCAGCTACGCCGACATGCTGAACAAGGAC 657
consensus_4650#1      ------------------------------------------------------------
                                                                                  

consensus_4650#0      TGGGTGATCATTCCCGTCGCCAACCCGGATGGGTACGAGTTCTCGCACACCGACAACGCA 717
consensus_4650#1      ------------------------------------------------------------
                                                                                  

consensus_4650#0      TGTGGCGCAAGAACCGCTTCCCGGCCACGATCCTCTGTACCGGTATTGATCTGAACCGTA 777
consensus_4650#1      ------------------------------------------------------------
                                                                                  

consensus_4650#0      ACTGGGA 784
consensus_4650#1      -------