cluster # 4653

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Anopheles gambiae
cluster # 4653 cluster # 4653 Sequences # 3 consensus # 2

see consensus multiple alignment with clustalw

Direct access to contigs :

consensus_4653#0 length = 1048 sequences # 2

consensus_4653#1 length = 699 sequences # 1

consensusID : consensus_4653#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 2
consensus length = 1048
fasta sequence

                              [CAAAAAGCGGCATCACCGGGGGCATATGAAAACAAATCTNAGCAGAACAACGGCGCGTAGAAACTTTTCAAACCACATCCTCTTAGTGTGACGATAAAGATCCGGGCAAAGGATTACTCGTCATCCCTCTCTCCCGATTCACCCGGTCCGGGACTTTCGTTGACGTTTTTCTATCTGCCCAACATGCAGGTGGTAACCATGAACATTGCTTTAGTAGATTTTCATTCTGTAGGGGCAGCAGCAAGCGACGTTCTCTCCACCGACAGCGTGCTGAATGAGCTGTTCTGCGGAGATAGAGGAGAGGAATGTCCCAATCCGAAGATAAAATACCAGCTGCAGGATCTTTCAATAGACATCAATCAACTGGCACGCATGCTANAGGAAAGGAATCTCGGCAGCCCTTTTCTTTGGGTGCAGAAAATTTGCGGTCTAGAGTACATTTCGACNGCGTACACATGCGTTCGAGGACTTGACGTCCGAAATGACAACCTAGAGACTGGCGATAAATTGCATGAAACCATCCCGGTCAATCATNCACTCCGTTAGAGCACGATGGGAGGCACGGTTAAAGCTCTACAAGCAAATCCACGATCTCGAGAGCAAAATGATAGATACATCTGTCAACGATGAACATGGACATCCGATACGCATCTCCAGCACAGTACTGCAGTGGAGTTCCATTTCATTTGAGGATTACGTTTCATCGGGCGTAGCTGGTATGTTCCTGGAGGATTCTATAGCCACTGCTAGTGACCTGTACTTCCGTGCTATAGTCATACGCGGCTCGGCTAAACTTGAAAGCTATATTTGTGTACCATGTCGGTATCCGGATGCATCACCGCTGTGGTCGTTCTCATTACACTGGAATGGCAAGCATACGTCGGTATCGAACAGCTCAGTGAGGGAAATGGAATACTGGTGCAACAGTTTGTCGGCACTGGAACACTCGTGTGACATTCTACCGAAACAATTAAAACGAGCAATGTCCTGCTTGGATATCTACCTGGAAACCGAAGGACCTTACTACGCGCCAGCAGAGTTTACACAG]

[+] EMBL BX619511             [CAAAAAGCGGCATCACCGGGGGCATATGAAAACAAATCTNAGCAGAACAACGGCGCGTAGAAACTTTTCAAACCACATCCTCTTAGTGTGACGATAAAGATCCGGGCAAAGGATTACTCGTCATCCCTCTCTCCCGATTCACCCGGTCCGGGACTTTCGTTGACGTTTTTCTATCTGCCCAACATGCAGGTGGTAACCATGAACATTGCTTTAGTAGATTTTCATTCTGTAGGGGCAGCAGCAAGCGACGTTCTCTCCACCGACAGCGTGCTGAATGAGCTGTTCTGCGGAGATAGAGGAGAGGAATGTCCCAATCCGAAGATAAAATACCAGCTGCAGGATCTTTCAATAGACATCAATCAACTGGCACGCATGCTANAGGAAAGGAATCTCGGCAGCCCTTTTCTTTGGGTGCAGAAAATTTGCGGTCTAGAGTACATTTCGACNGCGTACACATGCGTTCGAGGACTTGACGTCCGAAATGACAACCTAGAGACTGGCGATAAATTGCATGAAACCATCCCGGTCAATCATN                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                 ]
[+] EMBL BX621068             [                                                                                                                                                                                                                                                                                                                                                                ACATCAATCAACTGGCACNCATGCTAAAGGAAAGGAATCTCGGCAGCCCTTTTCTTTGGGTGCAGAAAATTTGCGGTCTAGAGTACATTTCGACGGCGTACACATGCGTTCGAGGACTTGACGTCGGAAATGACAACCTAGAGACTGGCGATAAATTGCATGAAACCATCCC GTCAATCATCCACTCCGTTAGAGCACGATGGGAGGCACGGTTAAAGCTCTACAAGCAAATCCACGATCTCGAGAGCAAAATGATAGATACATCTGTCAACGATGAACATGGACATCCGATACGCATCTCCAGCACAGTACTGCAGTGGAGTTCCATTTCATTTGAGGATTACGTTTCATCGGGCGTAGCTGGTATGTTCCTGGAGGATTCTATAGCCACTGCTAGTGACCTGTACTTCCGTGCTATAGTCATACGCGGCTCGGCTAAACTTGAAAGCTATATTTGTGTACCATGTCGGTATCCGGATGCATCACCGCTGTGGTCGTTCTCATTACACTGGAATGGCAAGCATACGTCGGTATCGAACAGCTCAGTGAGGGAAATGGAATACTGGTGCAACAGTTTGTCGGCACTGGAACACTCGTGTGACATTCTACCGAAACAATTAAAACGAGCAATGTCCTGCTTGGATATCTACCTGGAAACCGAAGGACCTTACTACGCGCCAGCAGAGTTTACACAG]




>consensus_4653#0
CAAAAAGCGGCATCACCGGGGGCATATGAAAACAAATCTNAGCAGAACAACGGCGCGTAG
AAACTTTTCAAACCACATCCTCTTAGTGTGACGATAAAGATCCGGGCAAAGGATTACTCG
TCATCCCTCTCTCCCGATTCACCCGGTCCGGGACTTTCGTTGACGTTTTTCTATCTGCCC
AACATGCAGGTGGTAACCATGAACATTGCTTTAGTAGATTTTCATTCTGTAGGGGCAGCA
GCAAGCGACGTTCTCTCCACCGACAGCGTGCTGAATGAGCTGTTCTGCGGAGATAGAGGA
GAGGAATGTCCCAATCCGAAGATAAAATACCAGCTGCAGGATCTTTCAATAGACATCAAT
CAACTGGCACGCATGCTANAGGAAAGGAATCTCGGCAGCCCTTTTCTTTGGGTGCAGAAA
ATTTGCGGTCTAGAGTACATTTCGACNGCGTACACATGCGTTCGAGGACTTGACGTCCGA
AATGACAACCTAGAGACTGGCGATAAATTGCATGAAACCATCCCGGTCAATCATNCACTC
CGTTAGAGCACGATGGGAGGCACGGTTAAAGCTCTACAAGCAAATCCACGATCTCGAGAG
CAAAATGATAGATACATCTGTCAACGATGAACATGGACATCCGATACGCATCTCCAGCAC
AGTACTGCAGTGGAGTTCCATTTCATTTGAGGATTACGTTTCATCGGGCGTAGCTGGTAT
GTTCCTGGAGGATTCTATAGCCACTGCTAGTGACCTGTACTTCCGTGCTATAGTCATACG
CGGCTCGGCTAAACTTGAAAGCTATATTTGTGTACCATGTCGGTATCCGGATGCATCACC
GCTGTGGTCGTTCTCATTACACTGGAATGGCAAGCATACGTCGGTATCGAACAGCTCAGT
GAGGGAAATGGAATACTGGTGCAACAGTTTGTCGGCACTGGAACACTCGTGTGACATTCT
ACCGAAACAATTAAAACGAGCAATGTCCTGCTTGGATATCTACCTGGAAACCGAAGGACC
TTACTACGCGCCAGCAGAGTTTACACAG

consensusID : consensus_4653#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 699
fasta sequence

                              [CCGCCCACGCGTCCGCACGGTTAAAGCTCTACAAGCAGATCCACGATCTCGAGAGCAAAATGATAGATACATCTGTCAACGATGAACATGGACATCCGATACGCATCTCCAGCACAGTACTGCAGTGGAGTTCCATTTCATTTGAGGATTACGTTTCATCGGGCGTAGCTGGTATGTTCCTGGAGGATTCTATAGCCACTGCTAGTGACCTGTACTTCCGTGCTATAGTCATACGCGGCTCGGCTAAACTTGAAAGCTATATTTGTGTACCATGTCGGTATCCGGATGCATCACCGCTGTGGTCGTTCTCATTACACTGGAATGGCAAGCATACGTCGGTATCGAACAGCTCAGTGAGGGAAATGGAATACTGGTGCAACAGTTTGTCGGCACTGGAACACTCGTGTGACATTCTACCGAAACAATTAAAACGAGCAATGTCCTGCTTGGATATCTACCTGGAAACCGAAGGACCTTACTACGCGCCAGCAGAGTTTACACAGGACAAAAGCTTTCTCAAACCTTTCCGGGGTCGCACAAGAGCACAACCCTTTCGAATTGCACCAAACGGTAGCAGTTCCTTGTTTACTCAAATTTAATATGCATGTACAGATGGAAAGAACTTAAAACATGCTAACCATTTTTTTACTACATCTTTTTAAATATCTATGTGTGAACAGAATTGGAATAGAGCAGAAT]

[+] EMBL BM638013             [CCGCCCACGCGTCCGCACGGTTAAAGCTCTACAAGCAGATCCACGATCTCGAGAGCAAAATGATAGATACATCTGTCAACGATGAACATGGACATCCGATACGCATCTCCAGCACAGTACTGCAGTGGAGTTCCATTTCATTTGAGGATTACGTTTCATCGGGCGTAGCTGGTATGTTCCTGGAGGATTCTATAGCCACTGCTAGTGACCTGTACTTCCGTGCTATAGTCATACGCGGCTCGGCTAAACTTGAAAGCTATATTTGTGTACCATGTCGGTATCCGGATGCATCACCGCTGTGGTCGTTCTCATTACACTGGAATGGCAAGCATACGTCGGTATCGAACAGCTCAGTGAGGGAAATGGAATACTGGTGCAACAGTTTGTCGGCACTGGAACACTCGTGTGACATTCTACCGAAACAATTAAAACGAGCAATGTCCTGCTTGGATATCTACCTGGAAACCGAAGGACCTTACTACGCGCCAGCAGAGTTTACACAGGACAAAAGCTTTCTCAAACCTTTCCGGGGTCGCACAAGAGCACAACCCTTTCGAATTGCACCAAACGGTAGCAGTTCCTTGTTTACTCAAATTTAATATGCATGTACAGATGGAAAGAACTTAAAACATGCTAACCATTTTTTTACTACATCTTTTTAAATATCTATGTGTGAACAGAATTGGAATAGAGCAGAAT]




>consensus_4653#1
CCGCCCACGCGTCCGCACGGTTAAAGCTCTACAAGCAGATCCACGATCTCGAGAGCAAAA
TGATAGATACATCTGTCAACGATGAACATGGACATCCGATACGCATCTCCAGCACAGTAC
TGCAGTGGAGTTCCATTTCATTTGAGGATTACGTTTCATCGGGCGTAGCTGGTATGTTCC
TGGAGGATTCTATAGCCACTGCTAGTGACCTGTACTTCCGTGCTATAGTCATACGCGGCT
CGGCTAAACTTGAAAGCTATATTTGTGTACCATGTCGGTATCCGGATGCATCACCGCTGT
GGTCGTTCTCATTACACTGGAATGGCAAGCATACGTCGGTATCGAACAGCTCAGTGAGGG
AAATGGAATACTGGTGCAACAGTTTGTCGGCACTGGAACACTCGTGTGACATTCTACCGA
AACAATTAAAACGAGCAATGTCCTGCTTGGATATCTACCTGGAAACCGAAGGACCTTACT
ACGCGCCAGCAGAGTTTACACAGGACAAAAGCTTTCTCAAACCTTTCCGGGGTCGCACAA
GAGCACAACCCTTTCGAATTGCACCAAACGGTAGCAGTTCCTTGTTTACTCAAATTTAAT
ATGCATGTACAGATGGAAAGAACTTAAAACATGCTAACCATTTTTTTACTACATCTTTTT
AAATATCTATGTGTGAACAGAATTGGAATAGAGCAGAAT

consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_4653#0      CAAAAAGCGGCATCACCGGGGGCATATGAAAACAAATCTNAGCAGAACAACGGCGCGTAG 60
consensus_4653#1      ------------------------------------------------------------
                                                                                  

consensus_4653#0      AAACTTTTCAAACCACATCCTCTTAGTGTGACGATAAAGATCCGGGCAAAGGATTACTCG 120
consensus_4653#1      ------------------------------------------------------------
                                                                                  

consensus_4653#0      TCATCCCTCTCTCCCGATTCACCCGGTCCGGGACTTTCGTTGACGTTTTTCTATCTGCCC 180
consensus_4653#1      ------------------------------------------------------------
                                                                                  

consensus_4653#0      AACATGCAGGTGGTAACCATGAACATTGCTTTAGTAGATTTTCATTCTGTAGGGGCAGCA 240
consensus_4653#1      ------------------------------------------------------------
                                                                                  

consensus_4653#0      GCAAGCGACGTTCTCTCCACCGACAGCGTGCTGAATGAGCTGTTCTGCGGAGATAGAGGA 300
consensus_4653#1      ------------------------------------------------------------
                                                                                  

consensus_4653#0      GAGGAATGTCCCAATCCGAAGATAAAATACCAGCTGCAGGATCTTTCAATAGACATCAAT 360
consensus_4653#1      ------------------------------------------------------------
                                                                                  

consensus_4653#0      CAACTGGCACGCATGCTANAGGAAAGGAATCTCGGCAGCCCTTTTCTTTGGGTGCAGAAA 420
consensus_4653#1      ------------------------------------------------------------
                                                                                  

consensus_4653#0      ATTTGCGGTCTAGAGTACATTTCGACNGCGTACACATGCGTTCGAGGACTTGACGTCCGA 480
consensus_4653#1      ------------------------------------------------------------
                                                                                  

consensus_4653#0      AATGACAACCTAGAGACTGGCGATAAATTGCATGAAACCATCCCGGTCAATCATNCACTC 540
consensus_4653#1      ------------------------------------------------------------
                                                                                  

consensus_4653#0      CGTTAGAGCACGATGGGAGGCACGGTTAAAGCTCTACAAGCAAATCCACGATCTCGAGAG 600
consensus_4653#1      -----CCGCCCACGCGTCCGCACGGTTAAAGCTCTACAAGCAGATCCACGATCTCGAGAG 55
                             ** *    *   *********************** *****************

consensus_4653#0      CAAAATGATAGATACATCTGTCAACGATGAACATGGACATCCGATACGCATCTCCAGCAC 660
consensus_4653#1      CAAAATGATAGATACATCTGTCAACGATGAACATGGACATCCGATACGCATCTCCAGCAC 115
                      ************************************************************

consensus_4653#0      AGTACTGCAGTGGAGTTCCATTTCATTTGAGGATTACGTTTCATCGGGCGTAGCTGGTAT 720
consensus_4653#1      AGTACTGCAGTGGAGTTCCATTTCATTTGAGGATTACGTTTCATCGGGCGTAGCTGGTAT 175
                      ************************************************************

consensus_4653#0      GTTCCTGGAGGATTCTATAGCCACTGCTAGTGACCTGTACTTCCGTGCTATAGTCATACG 780
consensus_4653#1      GTTCCTGGAGGATTCTATAGCCACTGCTAGTGACCTGTACTTCCGTGCTATAGTCATACG 235
                      ************************************************************

consensus_4653#0      CGGCTCGGCTAAACTTGAAAGCTATATTTGTGTACCATGTCGGTATCCGGATGCATCACC 840
consensus_4653#1      CGGCTCGGCTAAACTTGAAAGCTATATTTGTGTACCATGTCGGTATCCGGATGCATCACC 295
                      ************************************************************

consensus_4653#0      GCTGTGGTCGTTCTCATTACACTGGAATGGCAAGCATACGTCGGTATCGAACAGCTCAGT 900
consensus_4653#1      GCTGTGGTCGTTCTCATTACACTGGAATGGCAAGCATACGTCGGTATCGAACAGCTCAGT 355
                      ************************************************************

consensus_4653#0      GAGGGAAATGGAATACTGGTGCAACAGTTTGTCGGCACTGGAACACTCGTGTGACATTCT 960
consensus_4653#1      GAGGGAAATGGAATACTGGTGCAACAGTTTGTCGGCACTGGAACACTCGTGTGACATTCT 415
                      ************************************************************

consensus_4653#0      ACCGAAACAATTAAAACGAGCAATGTCCTGCTTGGATATCTACCTGGAAACCGAAGGACC 1020
consensus_4653#1      ACCGAAACAATTAAAACGAGCAATGTCCTGCTTGGATATCTACCTGGAAACCGAAGGACC 475
                      ************************************************************

consensus_4653#0      TTACTACGCGCCAGCAGAGTTTACACAG-------------------------------- 1048
consensus_4653#1      TTACTACGCGCCAGCAGAGTTTACACAGGACAAAAGCTTTCTCAAACCTTTCCGGGGTCG 535
                      ****************************                                

consensus_4653#0      ------------------------------------------------------------
consensus_4653#1      CACAAGAGCACAACCCTTTCGAATTGCACCAAACGGTAGCAGTTCCTTGTTTACTCAAAT 595
                                                                                  

consensus_4653#0      ------------------------------------------------------------
consensus_4653#1      TTAATATGCATGTACAGATGGAAAGAACTTAAAACATGCTAACCATTTTTTTACTACATC 655
                                                                                  

consensus_4653#0      --------------------------------------------
consensus_4653#1      TTTTTAAATATCTATGTGTGAACAGAATTGGAATAGAGCAGAAT 699