These datas are free for academic use only, please contact me for any other use. Anopheles gambiae see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_4655#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 683 fasta sequence [CCGGAGCAATGAAAAAAAGTGATAGAGAGAGAGAGAGAGAGAGAGAAATGAAAGAGAGTGAGAGAGTGTTTGTGACATGTTTTGGAGCCCAGTTTTGCCTGGTGAATTGGGTACCGGTGGTCCTGCAATTGATCTGACATCTTACCCCCATTTTTGCAGTGCTCCTCCGAGCATCTCCCGAACTGAGCAGGCGGGTTTTGGTACGAACCGCCCAACAAAACACCCCAGCACCCCAAAAGCAACGTTCGTCACCGAGGATCGACTGAACGATGCCTATCTGTACGCTACCGACGGTGACAATTTACGAGGACTTTGACAAGCTCAGCGCAAAGGAGGTGTACTTCACGGAGTCGGGCGACAAGGTGACGGTGAAGCTGTTACACTTTCCCAACCTCAGCCCGGAAGAGCAGGACCATCTGAAGACGATGTCGGACAGTGGGGACGAGCACGGTGCGGCCAACGCCGGCACGGCCGGCCATGCCGGAACGTCCGCCGGACGCGGTGCCCCGCACCCGCAAGAAGTCCTTCACCCGGAAGCTCTCGAACGATGCGCGCAAGTTTTCCGCCCTGGCCGCCAGCCGCAAAAACTCCAAGGACGCCGACCTGACGGCACTGGCCGGTGGCGCCAACGCAGCCCAATCGAGCCAGCATGCGGCGGGGCAGCATCATCACCATCATCACCA] [+] EMBL BM594205 [CCGGAGCAATGAAAAAAAGTGATAGAGAGAGAGAGAGAGAGAGAGAAATGAAAGAGAGTGAGAGAGTGTTTGTGACATGTTTTGGAGCCCAGTTTTGCCTGGTGAATTGGGTACCGGTGGTCCTGCAATTGATCTGACATCTTACCCCCATTTTTGCAGTGCTCCTCCGAGCATCTCCCGAACTGAGCAGGCGGGTTTTGGTACGAACCGCCCAACAAAACACCCCAGCACCCCAAAAGCAACGTTCGTCACCGAGGATCGACTGAACGATGCCTATCTGTACGCTACCGACGGTGACAATTTACGAGGACTTTGACAAGCTCAGCGCAAAGGAGGTGTACTTCACGGAGTCGGGCGACAAGGTGACGGTGAAGCTGTTACACTTTCCCAACCTCAGCCCGGAAGAGCAGGACCATCTGAAGACGATGTCGGACAGTGGGGACGAGCACGGTGCGGCCAACGCCGGCACGGCCGGCCATGCCGGAACGTCCGCCGGACGCGGTGCCCCGCACCCGCAAGAAGTCCTTCACCCGGAAGCTCTCGAACGATGCGCGCAAGTTTTCCGCCCTGGCCGCCAGCCGCAAAAACTCCAAGGACGCCGACCTGACGGCACTGGCCGGTGGCGCCAACGCAGCCCAATCGAGCCAGCATGCGGCGGGGCAGCATCATCACCATCATCACCA] consensusID : consensus_4655#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 622 fasta sequence [GGGTTTCATATCTCGATTATCAATTCGTGTTAGTATTTTTTTTCACTATTTTTTTAAAATATTCCTTACCTTTGGTTATTTCTATTTAGTTGTGTACCTCGATAGGGACAGAGCGACAGAGAGAGAGAGAGAGAAATATTAGAGAGTGAGAGAGTGTTTGTGACATGTTTTGGAGCCCAGTTTTGCCTGGTGAATTGGGTACCGGTGGTCCTGCAATTGATCTGACATCTTACCCCCATTTTTGCAGTGCTCCTCCGAGCATCTCCCGAACTGAGCAGGCGGGTTTTGGTACGAACCGCCCAACAAAACACCCCAGCACCCCAAAAGCAACGTTCGTCACCGAGGATCGACTGAACGATGCCTATCTGTACGCTACCGACGGTGACAATTTACGAGGACTTTGACAAGCTCAGCGCAAAGGAGGTGTACTTCACGGAGTCGGGCGACAAGGTGACGGTGAAGCTGTTACACTTTCCCAACCTCAGCCCGGAAGAGCAGGACCATCTGAAGACGATGTCGGACAGTGGGGACGAGCACGGTGCGGCCAACGCCGGCACGGCCGGCCATGCCGGAACGTCCGCGGACGCGGTGCCCCGCACCCGCAAGAAGTCCTTCACCCGGA] [+] EMBL BM622645 [GGGTTTCATATCTCGATTATCAATTCGTGTTAGTATTTTTTTTCACTATTTTTTTAAAATATTCCTTACCTTTGGTTATTTCTATTTAGTTGTGTACCTCGATAGGGACAGAGCGACAGAGAGAGAGAGAGAGAAATATTAGAGAGTGAGAGAGTGTTTGTGACATGTTTTGGAGCCCAGTTTTGCCTGGTGAATTGGGTACCGGTGGTCCTGCAATTGATCTGACATCTTACCCCCATTTTTGCAGTGCTCCTCCGAGCATCTCCCGAACTGAGCAGGCGGGTTTTGGTACGAACCGCCCAACAAAACACCCCAGCACCCCAAAAGCAACGTTCGTCACCGAGGATCGACTGAACGATGCCTATCTGTACGCTACCGACGGTGACAATTTACGAGGACTTTGACAAGCTCAGCGCAAAGGAGGTGTACTTCACGGAGTCGGGCGACAAGGTGACGGTGAAGCTGTTACACTTTCCCAACCTCAGCCCGGAAGAGCAGGACCATCTGAAGACGATGTCGGACAGTGGGGACGAGCACGGTGCGGCCAACGCCGGCACGGCCGGCCATGCCGGAACGTCCGCGGACGCGGTGCCCCGCACCCGCAAGAAGTCCTTCACCCGGA] consensusID : consensus_4655#2 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 446 fasta sequence [CAAGTATCGACTAAAAAACAAACAAACAAACAAAAAACAGTAGCATAGAACTTCAGCAAAACCGGCTTCCGTTTGGAAAACAACGGGGTGGGGAAAAGTGTGAGCAACAACACACGCAGCTTGTACATTATTAAGGGTTTCATATCTCGATTATCAATTCGTGTTAGTATTTTTTTTCACTATTTTTTTAAAATATTCCTTACCTTTGGTTATTTCTATTTAGTTGTGTACCTCGATAGGGAGAGAGCGACAGAGAGAGAGAACGAGCAAGGAAGAGAGCGAGAGAGAAGGTGAGCGAGAAAGGCTCGAATTTAGTGCGCATACTGTAGGGATGGAAATGGATTTTAAACACGAACCGGGATTACAGGCCGCGTCTCTATTCTCGATAACGTACAACGTCTCGCGTCTCTTGCTCCAGTGGTTAAGTTAATGCTGTAGGAGGTAAG] [+] EMBL BX624134 [CAAGTATCGACTAAAAAACAAACAAACAAACAAAAAACAGTAGCATAGAACTTCAGCAAAACCGGCTTCCGTTTGGAAAACAACGGGGTGGGGAAAAGTGTGAGCAACAACACACGCAGCTTGTACATTATTAAGGGTTTCATATCTCGATTATCAATTCGTGTTAGTATTTTTTTTCACTATTTTTTTAAAATATTCCTTACCTTTGGTTATTTCTATTTAGTTGTGTACCTCGATAGGGAGAGAGCGACAGAGAGAGAGAACGAGCAAGGAAGAGAGCGAGAGAGAAGGTGAGCGAGAAAGGCTCGAATTTAGTGCGCATACTGTAGGGATGGAAATGGATTTTAAACACGAACCGGGATTACAGGCCGCGTCTCTATTCTCGATAACGTACAACGTCTCGCGTCTCTTGCTCCAGTGGTTAAGTTAATGCTGTAGGAGGTAAG] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_4655#0 ------------------------------------------------------------ consensus_4655#1 GGGTTTCATATCTCGATTATCAATTCGTGTTAGTATTTTTTTTCACTATTTTTTTAAAAT 60 consensus_4655#2 ------------------------------------------------------------ consensus_4655#0 ----------------------------CCGGAGCAATGAAAAAAAGTGATAGAGAGAGA 32 consensus_4655#1 ATTCCTTACCTTTGGTTATTTCTATTTAGTTGTGTACCTCGATAGGGACAGAGCGACAGA 120 consensus_4655#2 ----------------------------------------------CAAGTATCGACTAA 14 * ** * consensus_4655#0 GAGAGAGAGAGAGAAATGAAAGAGAGTGAGAGAGTGTTTGTGACATGTTTTGGAGCCCAG 92 consensus_4655#1 GAGAGAGAGAGAGAAATATTAGAGAGTGAGAGAGTGTTTGTGACATGTTTTGGAGCCCAG 180 consensus_4655#2 AAAACAAACAAACAAACAAAAAACAGTAGCATAGAACTTCAG--------CAAAACCGGC 66 * * * * * * *** * * *** * ** ** * * ** consensus_4655#0 TTTTGCCTGGTGAATTG-GGTACCGGTGGTCCTGCAATTGATCTGACATCTTACCCCCAT 151 consensus_4655#1 TTTTGCCTGGTGAATTG-GGTACCGGTGGTCCTGCAATTGATCTGACATCTTACCCCCAT 239 consensus_4655#2 TTCCGTTTGGAAAACAACGGGGTGGGGAAAAGTGTGAGCAACAACACACGCAGCTTGTAC 126 ** * *** ** ** ** ** * * *** * * consensus_4655#0 TTT-TGCAGTGCTCCTCCGAGCATCTCCCGAACTGAGCAGGCGGGTTTTGGTACGAACCG 210 consensus_4655#1 TTT-TGCAGTGCTCCTCCGAGCATCTCCCGAACTGAGCAGGCGGGTTTTGGTACGAACCG 298 consensus_4655#2 ATTATTAAGGGTTTCATATCTCGATTATCAATTCGTGTTAGTATTTTTTTTCACTATTTT 186 ** * ** * * * * * * * * * * **** ** * consensus_4655#0 CCCAACAAAACACCCCAGCACCCCAAAAGCAACGTTCGTCACCGAGGATCGACTGAACGA 270 consensus_4655#1 CCCAACAAAACACCCCAGCACCCCAAAAGCAACGTTCGTCACCGAGGATCGACTGAACGA 358 consensus_4655#2 TTTAA-AATATTCCTTA-CCTTTGGTTATTTCTATTTAGTTGTGTACCTCGATAGGGAGA 244 ** ** * ** * * * ** * **** * ** consensus_4655#0 TGCCTATCTGTAC-GCTACCGACGGTGACAATTTACGAGGACTTTGACAAGCTCAGCGCA 329 consensus_4655#1 TGCCTATCTGTAC-GCTACCGACGGTGACAATTTACGAGGACTTTGACAAGCTCAGCGCA 417 consensus_4655#2 GAGCGACAGAGAGAGAGAACGAGCAAGGAAGAGAGCGAGA-----GAGAAGGTGAGCGAG 299 * * * * * *** * * **** ** *** * **** consensus_4655#0 AAGGAGGTGTACTTCACGGAGTCGGGCGACAAGGTGACGGTGAAGCTGTTACACTTTCCC 389 consensus_4655#1 AAGGAGGTGTACTTCACGGAGTCGGGCGACAAGGTGACGGTGAAGCTGTTACACTTTCCC 477 consensus_4655#2 AAAG-GCTCGAATTTAGTGCGCATACTGTAGGGATGGAAATGGATTTTAAACACGAACCG 358 ** * * * * ** * * * * * ** ** * * **** ** consensus_4655#0 AACCT-CAGCCCGGAAGAGCAGGACCATCTGAAGACGATGTCGGACAGTGGGGACGAGCA 448 consensus_4655#1 AACCT-CAGCCCGGAAGAGCAGGACCATCTGAAGACGATGTCGGACAGTGGGGACGAGCA 536 consensus_4655#2 GGATTACAGGCCGCGTCTCTATTCTCGATAACGTACAACGTCTCGCGTCTCTTGCTCCAG 418 * *** *** * * ** * *** * * consensus_4655#0 CGGTGCGGCCAACGCCGGCACGGCCGGCCATGCCGGAACGTCCGCCGGACGCGGTGCCCC 508 consensus_4655#1 CGGTGCGGCCAACGCCGGCACGGCCGGCCATGCCGGAACGTCCGC-GGACGCGGTGCCCC 595 consensus_4655#2 TGGTTAAGTTAATGCTGTAGGAGGTAAG-------------------------------- 446 *** * ** ** * * consensus_4655#0 GCACCCGCAAGAAGTCCTTCACCCGGAAGCTCTCGAACGATGCGCGCAAGTTTTCCGCCC 568 consensus_4655#1 GCACCCGCAAGAAGTCCTTCACCCGGA--------------------------------- 622 consensus_4655#2 ------------------------------------------------------------ consensus_4655#0 TGGCCGCCAGCCGCAAAAACTCCAAGGACGCCGACCTGACGGCACTGGCCGGTGGCGCCA 628 consensus_4655#1 ------------------------------------------------------------ consensus_4655#2 ------------------------------------------------------------ consensus_4655#0 ACGCAGCCCAATCGAGCCAGCATGCGGCGGGGCAGCATCATCACCATCATCACCA 683 consensus_4655#1 ------------------------------------------------------- consensus_4655#2 ------------------------------------------------------- |
Copyright Wed Dec 3 12:11:56 CET 2003 Hubert Wassner (hubert.wassner@noos.fr) | ||||