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These datas are free for academic use only, please contact me for any other use. Anopheles gambiae see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_4657#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 2 consensus length = 1241 fasta sequence
[CCGAATCGAATCGTATCGAAAATGTTTCCACTTATCGCTCTGTGAACAGTGTGTATTGGTGCCGTTCGTCGCTCGCAAATGTTCCAACATATTTGGCCAGTGTTGAACATTACCACGCGACGATGTTTCCACTCATCACGCGCCCTCAAAAGTGTCCCCCGGAAACGGTCCCTAGCGCGCAGCCTGGCCTACGGTCTCACCGGTAGCATTGCCGGCGCCGTCATGTACGATGGATTGACCAACGGGTTCGAAAACGTTGCCGGCGCTCAACGGTTCCTTCGCTCGTTCGCCATCGGGCTGAGCATATCGGTGGATTACGCCTGGAGCCTGAAGGGCTTGCAGGAAGGTGACGGGGTGTACGAAGCACTGCTGCCCGAAATTCATCTCCGCTCGGCCAAGAAACTGCTTGCCGGATGCCTCGCAAACGGTGGCCTTTACATCAAAATTGGGCCAGGGGGTAGCCGCCGTTAATCACATCATACCGAAAGAGTACGTGGACACGCTGCGTCAGCTGGAAGACCGTTGCCTGACCCGCCAGGCCGGGCGAAGTGCGCGCCCTGTTCGTGCAAGACTTTGGCGCCCCGCCGGAGGAACTATTCGCCAGCTTTCAGTACGAGCCGATCGCAGCCGCCAGCCTGGCACAGGTGTTCCGTGCCGTTACGCAGTCGGGCGAACAGGTCGCGGTCAAGGTGCAGTATGCCGATTTGCGCCGACGGTTCGACGGCGATTTGCGCACGATACTGTTCCTGCAGCGGTTGGTCGCGCTCCTGCACAAGAACTACAATTTCGGCTGGATAGTTGAAGATCTGCAGGGAACGCTGCGAGAGGAGCTTGATTTTGTGCACGAAGCGAAAAACGCAGAGCGCTGCGCACGGGACCTAGCCCGGCTGGACTTTGTGTACGTGCCGAAAGTGTTCTGGACGCACACGAACGAACGCATCCTGACGACGGAATTTATCGACGGCTGTAAAGTGAGCGATCGCAAAGCGATCGCTGCAATGCAGCTCGATCTAGCCGAGATCGATCGGCAGCTGTTTACCGCTTTCGGGCAGCAAATCTTCTCCACCGGCTTTGTGCATGCCGATCCGCACCCGGGCAACGTGTTTGTGCGCAAAGATCCGGNCAATCCGANGCGCATGCAGCTCGTACTGCTCGATCACGGTCTGTACGAGCAGCTGGCGCCNGCAGTGCGCGAAAATCTTGNCCGCTTTTTGGGAAGCGATCGTGCTGCGTGATCACNC]
[+] EMBL BM646676 [CCGAATCGAATCGTATCGAAAATGTTTCCACTTATCGCTCTGTGAACAGTGTGTATTGGTGCCGTTCGTCGCTCGCAAATGTTCCAACATATTTGGCCAGTGTTGAACATTACCACGCGACGATGTTTCCACTCATCACGCGCCCTCAAAAGTGTCCCCCGGAAACGGTCCCTAGCGCGCAGCCTGGCCTACGGTCTCACCGGTAGCATTGCCGGCGCCGTCATGTACGATGGATTGACCAACGGGTTCGAAAACGTTGCCGGCGCTCAACGGTTCCTTCGCTCGTTCGCCATCGGGCTGAGCATATCGGTGGATTACGCCTGGAGCCTGAAGGGCTTGCAGGAAGGTGACGGGGTGTACGAAGCACTGCTGCCCGAAATTCATCTCCGCTCGGCCAAGAAACTGCTTGCCGGATGCCTCGCAAACGGTGGCCTTTACATCAAAATTGGGCCAGGGGGTAGCCGCCGTTAATCACATCATACCGAAAGAGTACGTGGACACGCTGCGTCAGCTGGAAGACCGTTGCCTGACCCGCCAGGCCGGGCGAAGTGCGCGCCCTGTTCGTGCAAGACTTTGGCGCCCCGCCGGAGGAACTATTC ]
[+] EMBL BX626618 [ ACACGCTGCGTCAGCTGGAAGACCGTTGCCTGACCCGCCA GCCGGGCGAAGTGCGCGCCCTGTTCGTGCAAGACTTTGGCGCCCCGCCGGAGGAACTATTCGCCAGCTTTCAGTACGAGCCGATCGCAGCCGCCAGCCTGGCACAGGTGTTCCGTGCCGTTACGCAGTCGGGCGAACAGGTCGCGGTCAAGGTGCAGTATGCCGATTTGCGCCGACGGTTCGACGGCGATTTGCGCACGATACTGTTCCTGCAGCGGTTGGTCGCGCTCCTGCACAAGAACTACAATTTCGGCTGGATAGTTGAAGATCTGCAGGGAACGCTGCGAGAGGAGCTTGATTTTGTGCACGAAGCGAAAAACGCAGAGCGCTGCGCACGGGACCTAGCCCGGCTGGACTTTGTGTACGTGCCGAAAGTGTTCTGGACGCACACGAACGAACGCATCCTGACGACGGAATTTATCGACGGCTGTAAAGTGAGCGATCGCAAAGCGATCGCTGCAATGCAGCTCGATCTAGCCGAGATCGATCGGCAGCTGTTTACCGCTTTCGGGCAGCAAATCTTCTCCACCGGCTTTGTGCATGCCGATCCGCACCCGGGCAACGTGTTTGTGCGCAAAGATCCGGNCAATCCGANGCGCATGCAGCTCGTACTGCTCGATCACGGTCTGTACGAGCAGCTGGCGCCNGCAGTGCGCGAAAATCTTGNCCGCTTTTTGGGAAGCGATCGTGCTGCGTGATCACNC]
consensusID : consensus_4657#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 570 fasta sequence
[CGACCCACGCGTCCGGTGAACAGTGTGTATTGGTGCCGTTCGTCGCTCGCAAATGTTCCAACATATTTGGCCAGTGTTGAACATTACCACGCGACGATGTTTCCACTCATCACGCGCCCTCAAAAGTGTCCCCCGGAAACGGTCCCTAGCGCGCAGCCTAGCCTACGGTCTCACCGGTAGCATTGCCGGCACCGTCCTGTACGATGGAGTGGCCAATGGGTTCGAAAACGTTGCCGGCGCTCAACGGTTCCTTCGCTCGTTCGCCATCGGGCTGAGCATATCGGTGGATTACGCCTGGAGCCTGAAGGGCTTGCAGGAAGGTGACGGGGCGTACGAAGCACTGCTGCCCGAAATTCATCTCCGCTCGGCCAAGAAACTGCTCGCCGGATGCCTGGCAAACGGTGGCCTTTACATCAAAATTGGCCAGGGGGTAGCCGCCGTTAATCACATCATACCGAGAAGAGTACGTTGAAACGCTGCGTCAGCTGGAAGACCGTTGCCTGACCCGCCAGCCGGGCGAAGTGCGTGCCCTGTTCGTGCAAGACTTTGGCGCCCCGCCGGAGGAACTAT]
[+] EMBL BM588592 [CGACCCACGCGTCCGGTGAACAGTGTGTATTGGTGCCGTTCGTCGCTCGCAAATGTTCCAACATATTTGGCCAGTGTTGAACATTACCACGCGACGATGTTTCCACTCATCACGCGCCCTCAAAAGTGTCCCCCGGAAACGGTCCCTAGCGCGCAGCCTAGCCTACGGTCTCACCGGTAGCATTGCCGGCACCGTCCTGTACGATGGAGTGGCCAATGGGTTCGAAAACGTTGCCGGCGCTCAACGGTTCCTTCGCTCGTTCGCCATCGGGCTGAGCATATCGGTGGATTACGCCTGGAGCCTGAAGGGCTTGCAGGAAGGTGACGGGGCGTACGAAGCACTGCTGCCCGAAATTCATCTCCGCTCGGCCAAGAAACTGCTCGCCGGATGCCTGGCAAACGGTGGCCTTTACATCAAAATTGGCCAGGGGGTAGCCGCCGTTAATCACATCATACCGAGAAGAGTACGTTGAAACGCTGCGTCAGCTGGAAGACCGTTGCCTGACCCGCCAGCCGGGCGAAGTGCGTGCCCTGTTCGTGCAAGACTTTGGCGCCCCGCCGGAGGAACTAT]
consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment
consensus_4657#0 CCGAATCGAATCGTATCGAAAATGTTTCCACTTAT-CGCTCTGTGAACAGTGTGTATTGG 59
consensus_4657#1 ---------------------------CGACCCACGCGTCCGGTGAACAGTGTGTATTGG 33
* ** * ** * ******************
consensus_4657#0 TGCCGTTCGTCGCTCGCAAATGTTCCAACATATTTGGCCAGTGTTGAACATTACCACGCG 119
consensus_4657#1 TGCCGTTCGTCGCTCGCAAATGTTCCAACATATTTGGCCAGTGTTGAACATTACCACGCG 93
************************************************************
consensus_4657#0 ACGATGTTTCCACTCATCACGCGCCCTCAAAAGTGTCCCCCGGAAACGGTCCCTAGCGCG 179
consensus_4657#1 ACGATGTTTCCACTCATCACGCGCCCTCAAAAGTGTCCCCCGGAAACGGTCCCTAGCGCG 153
************************************************************
consensus_4657#0 CAGCCTGGCCTACGGTCTCACCGGTAGCATTGCCGGCGCCGTCATGTACGATGGATTGAC 239
consensus_4657#1 CAGCCTAGCCTACGGTCTCACCGGTAGCATTGCCGGCACCGTCCTGTACGATGGAGTGGC 213
****** ****************************** ***** *********** ** *
consensus_4657#0 CAACGGGTTCGAAAACGTTGCCGGCGCTCAACGGTTCCTTCGCTCGTTCGCCATCGGGCT 299
consensus_4657#1 CAATGGGTTCGAAAACGTTGCCGGCGCTCAACGGTTCCTTCGCTCGTTCGCCATCGGGCT 273
*** ********************************************************
consensus_4657#0 GAGCATATCGGTGGATTACGCCTGGAGCCTGAAGGGCTTGCAGGAAGGTGACGGGGTGTA 359
consensus_4657#1 GAGCATATCGGTGGATTACGCCTGGAGCCTGAAGGGCTTGCAGGAAGGTGACGGGGCGTA 333
******************************************************** ***
consensus_4657#0 CGAAGCACTGCTGCCCGAAATTCATCTCCGCTCGGCCAAGAAACTGCTTGCCGGATGCCT 419
consensus_4657#1 CGAAGCACTGCTGCCCGAAATTCATCTCCGCTCGGCCAAGAAACTGCTCGCCGGATGCCT 393
************************************************ ***********
consensus_4657#0 CGCAAACGGTGGCCTTTACATCAAAATTGGGCCAGGGGGTAGCCGCCGTTAATCACATCA 479
consensus_4657#1 GGCAAACGGTGGCCTTTACATCAAAATTGG-CCAGGGGGTAGCCGCCGTTAATCACATCA 452
***************************** *****************************
consensus_4657#0 TACCGA-AAGAGTACGTGGACACGCTGCGTCAGCTGGAAGACCGTTGCCTGACCCGCCAG 538
consensus_4657#1 TACCGAGAAGAGTACGTTGAAACGCTGCGTCAGCTGGAAGACCGTTGCCTGACCCGCCAG 512
****** ********** ** ***************************************
consensus_4657#0 GCCGGGCGAAGTGCGCGCCCTGTTCGTGCAAGACTTTGGCGCCCCGCCGGAGGAACTATT 598
consensus_4657#1 -CCGGGCGAAGTGCGTGCCCTGTTCGTGCAAGACTTTGGCGCCCCGCCGGAGGAACTAT- 570
************** *******************************************
consensus_4657#0 CGCCAGCTTTCAGTACGAGCCGATCGCAGCCGCCAGCCTGGCACAGGTGTTCCGTGCCGT 658
consensus_4657#1 ------------------------------------------------------------
consensus_4657#0 TACGCAGTCGGGCGAACAGGTCGCGGTCAAGGTGCAGTATGCCGATTTGCGCCGACGGTT 718
consensus_4657#1 ------------------------------------------------------------
consensus_4657#0 CGACGGCGATTTGCGCACGATACTGTTCCTGCAGCGGTTGGTCGCGCTCCTGCACAAGAA 778
consensus_4657#1 ------------------------------------------------------------
consensus_4657#0 CTACAATTTCGGCTGGATAGTTGAAGATCTGCAGGGAACGCTGCGAGAGGAGCTTGATTT 838
consensus_4657#1 ------------------------------------------------------------
consensus_4657#0 TGTGCACGAAGCGAAAAACGCAGAGCGCTGCGCACGGGACCTAGCCCGGCTGGACTTTGT 898
consensus_4657#1 ------------------------------------------------------------
consensus_4657#0 GTACGTGCCGAAAGTGTTCTGGACGCACACGAACGAACGCATCCTGACGACGGAATTTAT 958
consensus_4657#1 ------------------------------------------------------------
consensus_4657#0 CGACGGCTGTAAAGTGAGCGATCGCAAAGCGATCGCTGCAATGCAGCTCGATCTAGCCGA 1018
consensus_4657#1 ------------------------------------------------------------
consensus_4657#0 GATCGATCGGCAGCTGTTTACCGCTTTCGGGCAGCAAATCTTCTCCACCGGCTTTGTGCA 1078
consensus_4657#1 ------------------------------------------------------------
consensus_4657#0 TGCCGATCCGCACCCGGGCAACGTGTTTGTGCGCAAAGATCCGGNCAATCCGANGCGCAT 1138
consensus_4657#1 ------------------------------------------------------------
consensus_4657#0 GCAGCTCGTACTGCTCGATCACGGTCTGTACGAGCAGCTGGCGCCNGCAGTGCGCGAAAA 1198
consensus_4657#1 ------------------------------------------------------------
consensus_4657#0 TCTTGNCCGCTTTTTGGGAAGCGATCGTGCTGCGTGATCACNC 1241
consensus_4657#1 -------------------------------------------
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| Copyright Wed Dec 3 12:11:56 CET 2003 Hubert Wassner (hubert.wassner@noos.fr) | ||||