cluster # 4661

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Anopheles gambiae
cluster # 4661 cluster # 4661 Sequences # 3 consensus # 3

see consensus multiple alignment with clustalw

Direct access to contigs :

consensus_4661#0 length = 710 sequences # 1

consensus_4661#1 length = 653 sequences # 1
consensus_4661#2 length = 548 sequences # 1

consensusID : consensus_4661#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 710
fasta sequence

                              [CCTTGCAAGGAAAAAAACAGGATAAACGAAATAAAGCCAATATTATGATGCATTCAGTATATGATTGACCTGCACAGAGGTGTGCTGCTAGTAGATTAAAGTTAAAAAAACACACACACACACTATTCAACGCACTAACAACACACGAATCGTAAGAATGTACAGTTGAGGAGGGAGGGGCGTTAGTGCAAGGTCGAGCGACCCGCTTCAATAATCGACTGGAGGAGAGATGCTCACAGAAATGATCGGTTTCACCAAAATTTTAAACAAAAAAAAAACAAACAAGTAAACAACCACAAAACTAGAGGCAACGAAATGTAGAACGTCAACCGTTTTTTGATAGATTATGCAAAGGAGGGTGGGGTAAACCGTCTGTGGCAAACTTGGGGATAGGATGGTTGCTTTGATTCTTATTTACACTTGTCTATTTATCTTCCGGCGCGCCCCGTATTCGGAATATCGGTACCGCCGGATACACCCGATACCCCGTATTCGGAATATCGGTACCGCCGGATACACCCGATACCCACACAAACACACATACACATGCTGGAGGAGGTTTAATGAGAAAAGCTAAACAGATTTGAAATTTATAAAAAAAAATATATATACGAAACAGGCTATAGATAGAGAAGGCAAGAGAGAAACCAAGGAATGGAATTGAGTGCACATGTTTCTCATCAAGCTAACCTTGTTGTCCAACTANAATA]

[+] EMBL BX622340             [CCTTGCAAGGAAAAAAACAGGATAAACGAAATAAAGCCAATATTATGATGCATTCAGTATATGATTGACCTGCACAGAGGTGTGCTGCTAGTAGATTAAAGTTAAAAAAACACACACACACACTATTCAACGCACTAACAACACACGAATCGTAAGAATGTACAGTTGAGGAGGGAGGGGCGTTAGTGCAAGGTCGAGCGACCCGCTTCAATAATCGACTGGAGGAGAGATGCTCACAGAAATGATCGGTTTCACCAAAATTTTAAACAAAAAAAAAACAAACAAGTAAACAACCACAAAACTAGAGGCAACGAAATGTAGAACGTCAACCGTTTTTTGATAGATTATGCAAAGGAGGGTGGGGTAAACCGTCTGTGGCAAACTTGGGGATAGGATGGTTGCTTTGATTCTTATTTACACTTGTCTATTTATCTTCCGGCGCGCCCCGTATTCGGAATATCGGTACCGCCGGATACACCCGATACCCCGTATTCGGAATATCGGTACCGCCGGATACACCCGATACCCACACAAACACACATACACATGCTGGAGGAGGTTTAATGAGAAAAGCTAAACAGATTTGAAATTTATAAAAAAAAATATATATACGAAACAGGCTATAGATAGAGAAGGCAAGAGAGAAACCAAGGAATGGAATTGAGTGCACATGTTTCTCATCAAGCTAACCTTGTTGTCCAACTANAATA]




>consensus_4661#0
CCTTGCAAGGAAAAAAACAGGATAAACGAAATAAAGCCAATATTATGATGCATTCAGTAT
ATGATTGACCTGCACAGAGGTGTGCTGCTAGTAGATTAAAGTTAAAAAAACACACACACA
CACTATTCAACGCACTAACAACACACGAATCGTAAGAATGTACAGTTGAGGAGGGAGGGG
CGTTAGTGCAAGGTCGAGCGACCCGCTTCAATAATCGACTGGAGGAGAGATGCTCACAGA
AATGATCGGTTTCACCAAAATTTTAAACAAAAAAAAAACAAACAAGTAAACAACCACAAA
ACTAGAGGCAACGAAATGTAGAACGTCAACCGTTTTTTGATAGATTATGCAAAGGAGGGT
GGGGTAAACCGTCTGTGGCAAACTTGGGGATAGGATGGTTGCTTTGATTCTTATTTACAC
TTGTCTATTTATCTTCCGGCGCGCCCCGTATTCGGAATATCGGTACCGCCGGATACACCC
GATACCCCGTATTCGGAATATCGGTACCGCCGGATACACCCGATACCCACACAAACACAC
ATACACATGCTGGAGGAGGTTTAATGAGAAAAGCTAAACAGATTTGAAATTTATAAAAAA
AAATATATATACGAAACAGGCTATAGATAGAGAAGGCAAGAGAGAAACCAAGGAATGGAA
TTGAGTGCACATGTTTCTCATCAAGCTAACCTTGTTGTCCAACTANAATA

consensusID : consensus_4661#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 653
fasta sequence

                              [GCAGAATCGCCACGAGNTGNAGAAAACAAAGGAATGGAATTGAGTGCACATGTTTCTCATACAAACTAACCTTGTTGTCCAAACTAGAATACTAGGATGTGTGTGTGTGCGCAATGCAATGGTCCAATCGAAATGTGCAAATTATATACCGACATAGTCCATCCGGCGCCGCTGTGCGTTTAACGTCACTGTGCACGGAAGTGCTAGGGCATAGCTAGTAGTAGTGCAACTTTACTGCGTAGTGTTGTTTTTCGCGGCACTCGGGCCAAAAGGGAGAAAAAGGCAAATTATTGTTCTTTAAGAGAGACGTAGAGCAAAGAAGTATGTATTACAAAAAGATACACACACACACACTAACACACGCATACGCAGAGAAAAAACAACGAATATTAAGAGAGAACAAGGAGAAAGTAGAAATAGTAATAGCAAAGAAGTAGCATAAGAATAATAAGAAGAAAACACACACACACACACAACAAACCATACATACACATAACGTAAACGATNTTCGGGAGAGATCNGTTCCCCTTGTCTGCCGTTGGTAATACGGTGGTGTTGTGTGCACCCGTATCATTGCAGCAAGGCATTGTATCACCAGGGGTTGACTTTATACAAGCCATTACCATGCATTACNACAACGACAAAACGCANAC]

[+] EMBL BX467274             [GCAGAATCGCCACGAGNTGNAGAAAACAAAGGAATGGAATTGAGTGCACATGTTTCTCATACAAACTAACCTTGTTGTCCAAACTAGAATACTAGGATGTGTGTGTGTGCGCAATGCAATGGTCCAATCGAAATGTGCAAATTATATACCGACATAGTCCATCCGGCGCCGCTGTGCGTTTAACGTCACTGTGCACGGAAGTGCTAGGGCATAGCTAGTAGTAGTGCAACTTTACTGCGTAGTGTTGTTTTTCGCGGCACTCGGGCCAAAAGGGAGAAAAAGGCAAATTATTGTTCTTTAAGAGAGACGTAGAGCAAAGAAGTATGTATTACAAAAAGATACACACACACACACTAACACACGCATACGCAGAGAAAAAACAACGAATATTAAGAGAGAACAAGGAGAAAGTAGAAATAGTAATAGCAAAGAAGTAGCATAAGAATAATAAGAAGAAAACACACACACACACACAACAAACCATACATACACATAACGTAAACGATNTTCGGGAGAGATCNGTTCCCCTTGTCTGCCGTTGGTAATACGGTGGTGTTGTGTGCACCCGTATCATTGCAGCAAGGCATTGTATCACCAGGGGTTGACTTTATACAAGCCATTACCATGCATTACNACAACGACAAAACGCANAC]




>consensus_4661#1
GCAGAATCGCCACGAGNTGNAGAAAACAAAGGAATGGAATTGAGTGCACATGTTTCTCAT
ACAAACTAACCTTGTTGTCCAAACTAGAATACTAGGATGTGTGTGTGTGCGCAATGCAAT
GGTCCAATCGAAATGTGCAAATTATATACCGACATAGTCCATCCGGCGCCGCTGTGCGTT
TAACGTCACTGTGCACGGAAGTGCTAGGGCATAGCTAGTAGTAGTGCAACTTTACTGCGT
AGTGTTGTTTTTCGCGGCACTCGGGCCAAAAGGGAGAAAAAGGCAAATTATTGTTCTTTA
AGAGAGACGTAGAGCAAAGAAGTATGTATTACAAAAAGATACACACACACACACTAACAC
ACGCATACGCAGAGAAAAAACAACGAATATTAAGAGAGAACAAGGAGAAAGTAGAAATAG
TAATAGCAAAGAAGTAGCATAAGAATAATAAGAAGAAAACACACACACACACACAACAAA
CCATACATACACATAACGTAAACGATNTTCGGGAGAGATCNGTTCCCCTTGTCTGCCGTT
GGTAATACGGTGGTGTTGTGTGCACCCGTATCATTGCAGCAAGGCATTGTATCACCAGGG
GTTGACTTTATACAAGCCATTACCATGCATTACNACAACGACAAAACGCANAC

consensusID : consensus_4661#2
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 548
fasta sequence

                              [ACAAACAAGTAAATAACCACAAAACTAGAGGCAACGAAATGTAGAACGTCAACCGTTTTTTGATAGATTATGCAAAGGAGGGTGGGGTAAACCGTCTGTGGCAAACTTGGGGATAGGATGGTTGCTTTGATTCTTATTTACACTTGTCTATTTATCTTCCGGCGCGCCCCGTATTCGGAATATCGGTACCGCCGGATACACCCGATACCCACACAAACACACATACACATGCTGGAGGAGGTTTAATGAGAAAAGCTAAACAGATTTGAAATTTATAAAAAAAAATTACACGAAACAGGCTATAGATAGAGAAGGCAAGAGAGAAAACAAAGGAATGGAATTGAGTGCACATGTTTCTCATACAAGCTAACCTTGTTGTCCAAACTAGAATACTAGGATGTGTGTGTGTGCGCAATGCAATGGTCCAATCGAAATGTGCAAATTATATACCGACATAGTCCATCCGGCGCCGCTGTGCGTTTAACGTCACTGTGCACGGAAGTGCTAGGGCATAGCTAGTAGTAGTGCAACTTTACTGCGTAGTGGTG]

[+] EMBL BM655957             [ACAAACAAGTAAATAACCACAAAACTAGAGGCAACGAAATGTAGAACGTCAACCGTTTTTTGATAGATTATGCAAAGGAGGGTGGGGTAAACCGTCTGTGGCAAACTTGGGGATAGGATGGTTGCTTTGATTCTTATTTACACTTGTCTATTTATCTTCCGGCGCGCCCCGTATTCGGAATATCGGTACCGCCGGATACACCCGATACCCACACAAACACACATACACATGCTGGAGGAGGTTTAATGAGAAAAGCTAAACAGATTTGAAATTTATAAAAAAAAATTACACGAAACAGGCTATAGATAGAGAAGGCAAGAGAGAAAACAAAGGAATGGAATTGAGTGCACATGTTTCTCATACAAGCTAACCTTGTTGTCCAAACTAGAATACTAGGATGTGTGTGTGTGCGCAATGCAATGGTCCAATCGAAATGTGCAAATTATATACCGACATAGTCCATCCGGCGCCGCTGTGCGTTTAACGTCACTGTGCACGGAAGTGCTAGGGCATAGCTAGTAGTAGTGCAACTTTACTGCGTAGTGGTG]




>consensus_4661#2
ACAAACAAGTAAATAACCACAAAACTAGAGGCAACGAAATGTAGAACGTCAACCGTTTTT
TGATAGATTATGCAAAGGAGGGTGGGGTAAACCGTCTGTGGCAAACTTGGGGATAGGATG
GTTGCTTTGATTCTTATTTACACTTGTCTATTTATCTTCCGGCGCGCCCCGTATTCGGAA
TATCGGTACCGCCGGATACACCCGATACCCACACAAACACACATACACATGCTGGAGGAG
GTTTAATGAGAAAAGCTAAACAGATTTGAAATTTATAAAAAAAAATTACACGAAACAGGC
TATAGATAGAGAAGGCAAGAGAGAAAACAAAGGAATGGAATTGAGTGCACATGTTTCTCA
TACAAGCTAACCTTGTTGTCCAAACTAGAATACTAGGATGTGTGTGTGTGCGCAATGCAA
TGGTCCAATCGAAATGTGCAAATTATATACCGACATAGTCCATCCGGCGCCGCTGTGCGT
TTAACGTCACTGTGCACGGAAGTGCTAGGGCATAGCTAGTAGTAGTGCAACTTTACTGCG
TAGTGGTG

consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_4661#0      CCTTGCAAGGAAAAAAACAGGATAA--ACGAAATAAAGCCAATATTATGATGCA-TTCAG 57
consensus_4661#2      ------------------------------------------------------------
consensus_4661#1      ----------------GCAGAATCGCCACGAGNTGNAGAAAACAAAGGAATGGAATTGAG 44
                                                                                  

consensus_4661#0      TATATGATTGACCTGCACAGAGGTGTGCTGCTAGTAGATTAAAGTTAAAAAAACACACAC 117
consensus_4661#2      ------------------------------------------------------------
consensus_4661#1      TGCACATGTTTCTCATACAAACTAACCTTGTTGTCCAAACTAGAATACTAGGATGTGTGT 104
                                                                                  

consensus_4661#0      ACACACTATTCAACGCACTAACAACACACGAATCGTAAGAATGTACAGTTGAGGAGGGAG 177
consensus_4661#2      ------------------------------------------------------------
consensus_4661#1      GTGTGCG---CAATGCAATGGT------CCAATCG---AAATGTGCAAATTATATACCGA 152
                                                                                  

consensus_4661#0      GGGCGTTAGTGCAAGGTCGAGCGACCCGCTTCAATAATCGACTGGAGGAGAGATGCTCAC 237
consensus_4661#2      ------------------------------------------------------------
consensus_4661#1      CATAGTCCATCCGGCGCCG--CTGTGCGTTTAAC--GTCACTGTGCACGGAAGTGCTA-- 206
                                                                                  

consensus_4661#0      AGAAATGATCGGTTTCACCAAAATTTTAAACAAAAAAAAAACAAACAAGTAAACAACCAC 297
consensus_4661#2      ----------------------------------------ACAAACAAGTAAATAACCAC 20
consensus_4661#1      GGGCATAGCTAGTAGTAGTGCAACTTTA--CTGCGTAGTGTTGTTTTTCGCGGCA--CTC 262
                                                                            *  * *

consensus_4661#0      AAAACTAGAGGCAACGAAATGTAGAACGTCAACCGTTTTTTGATAGATTATGCAAAGGAG 357
consensus_4661#2      AAAACTAGAGGCAACGAAATGTAGAACGTCAACCGTTTTTTGATAGATTATGCAAAGGAG 80
consensus_4661#1      GGGCCAAAAGGGAGAAAAAGGCAAATTATTGTTCTTTAAGAGAGACGTAGAGCAAAGAAG 322
                          * * *** *   *** * * *   *    * **    ** *  *   ****** **

consensus_4661#0      GGTGGGGTA--AACCGTCTGTGGCAAACTTGGGGATAGGATGGTTGCTTTGATTCTTATT 415
consensus_4661#2      GGTGGGGTA--AACCGTCTGTGGCAAACTTGGGGATAGGATGGTTGCTTTGATTCTTATT 138
consensus_4661#1      TATGTATTACAAAAAGATACACACACACACACTAACAC-ACGCATACGCAGAGAAAAAAC 381
                        **   **  **  *       ** **      * *  * *  * *   **     *  

consensus_4661#0      TACACTTGTCTATTTATCTTCCGGCGCGCCCCGTATTCGGAATATCGGTACCGCCGGATA 475
consensus_4661#2      TACACTTGTCTATTTATCTTCCGGCGCGCCCCGTATTCGGAATATCGGTACCGCCGGATA 198
consensus_4661#1      AACGAATATTAAGAGAGAACAAGGAGAAAGTAGAAATAGTAATAGCAAAGAAGTAGCATA 441
                       **   * *  *   *      ** *      * * * * **** *      *  * ***

consensus_4661#0      CACCCGATACCCCGTATTCGGAATATCGGTACCGCCGGATACACCCGATACCCACACAAA 535
consensus_4661#2      CACCCGATACCC-----------------------------------------ACACAAA 217
consensus_4661#1      AGAATAATAAGAAGAAAAC-------------------ACACACACACACACAACA-AAC 481
                            ***                                            *** ** 

consensus_4661#0      CACACATACACATGCTGGAGGAGGTTT---AATGAGAAAAGCTAAACAGATTTGAAATTT 592
consensus_4661#2      CACACATACACATGCTGGAGGAGGTTT---AATGAGAAAAGCTAAACAGATTTGAAATTT 274
consensus_4661#1      CATACATACACATAACGTAAACGATNTTCGGGAGAGATCNGTTCCCCTTGTCTGCCGTTG 541
                      ** **********   * *   * * *      ****   * *   *   * **   ** 

consensus_4661#0      ATAAAAAAAAATATATATACGAAACAGGCTATAGATAGAGAAGGCAAGAGAGAAACCAA- 651
consensus_4661#2      ATAAAAAAAAAT---TACACGAAACAGGCTATAGATAGAGAAGGCAAGAGAGAAAACAAA 331
consensus_4661#1      GTAATACGGTGGTGTTGTGTGCACCCG--TATCATTGCAGCAAGGCATTGTATCACCA-- 597
                       *** *         *    * * * *  ***   *  ** * *  *  *    * **  

consensus_4661#0      GGAATGGAATTGAGTGCACATGTTTCTCAT-CAAGCTAACCTTGTTGTCCAA-CTANAAT 709
consensus_4661#2      GGAATGGAATTGAGTGCACATGTTTCTCATACAAGCTAACCTTGTTGTCCAAACTAGAAT 391
consensus_4661#1      GGGGTTGACTTTA-TACAAGCCATTACCATGCA---TTACNACAACGACAAAACGCANAC 653
                      **  * ** ** * * **     **  *** **   * **      * * ** *    * 

consensus_4661#0      A----------------------------------------------------------- 710
consensus_4661#2      ACTAGGATGTGTGTGTGTGCGCAATGCAATGGTCCAATCGAAATGTGCAAATTATATACC 451
consensus_4661#1      ------------------------------------------------------------
                                                                                  

consensus_4661#0      ------------------------------------------------------------
consensus_4661#2      GACATAGTCCATCCGGCGCCGCTGTGCGTTTAACGTCACTGTGCACGGAAGTGCTAGGGC 511
consensus_4661#1      ------------------------------------------------------------
                                                                                  

consensus_4661#0      -------------------------------------
consensus_4661#2      ATAGCTAGTAGTAGTGCAACTTTACTGCGTAGTGGTG 548
consensus_4661#1      -------------------------------------