These datas are free for academic use only, please contact me for any other use. Anopheles gambiae see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_4662#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 2 consensus length = 865 fasta sequence [TCACACTCATCGTCGGCTCTCGTCTCAAAACAAACAAATCGTGATCGAATCGTGCTGAATATGTTTGCTGGCGTACGTATATGTGGCAAAAGTGATATGTTGTGCCCCACAGTGCAGTAGTGTTATTTTGAATCTATCGAAACCCAGCTAGTATAGAACATCCCCCAAAACCCCATTCACTAACGAACGATCGTTATAAAAACAACCTTCAATTGAGTTAGACAACATTTGGCGAGCTTTTCTTGTTCTCACACTCACAGCGAACGAAAGTTGACACGCAACGCACCACACCGTCCACGTACCCGTGTCCTTGTTTGCACGTAAATTGAAGTTGATGTTGACTATTCTCATATTTGAAAATTTAGCATGTCCGAGCGTCGTGGAACGAAGGCACTAGAGTTATGGTGCCGCCGAATAGCCGAGGGCTACAAGGATGTTAAAATCACGAACATGAGCACCTCCTGGCGTGACGGTCTAGCTTTCTGCGCCATCATCCACAACTTCCGGCCAGATTTGATATACTAAACAATCGTCTTTACACACTACGATTTTGCAAGCCTCAGCAAGGACAACGTGTACTACAACAATGAACTAGCGTTCACGATCGCAGAGCAACATCTCGGCATACCGTCGCTGCTGGATCCGGCTGATATGGTCAAATACGAGGTGCCGGATCGATTCTCAATTCTCACTTACCTGTCCCAGTACTACCGAGTGTTCAGCAATCAAGAACCAGCAAGTAAGAAGGTCGTCGCAAAGGATACCAAAACCGATGACCTAACATCAAAGGAGGATAGCAACAGTTTGGATATAGTAGGACAATACAAACCGGAGAAAAAAAAAAAAAAAAAGGCCACATTTTCCC] [+] EMBL CNS08M4R [TCACACTCATCGTCGGCTCTCGTCTCAAAACAAACAAATCGTGATCGAATCGTGCTGAATATGTTTGCTGGCGTACGTATATGTGGCAAAAGTGATATGTTGTGCCCCACAGTGCAGTAGTGTTATTTTGAATCTATCGAAACCCAGCTAGTATAGAACATCCCCCAAAACCCCATTCACTAACGAACGATCGTTATAAAAACAACCTTCAATTGAGTTAGACAACATTTGGCGAGCTTTTCTTGTTCTCACACTCACAGCGAACGAAAGTTGACACGCAACGCACCACACCGTCCACGTACCCGTGTCCTTGTTTGCACGTAAATTGAAGTTGATGTTGACTATTCTCATATTTGAAAATTTAGCATGTCCGAGCGTCGTGGAACGAAGGCACTAGAGTTATGGTGCCGCCGAATAGCCGAGGGCTACAAGGATGTTAAAATCACGAACATGAGCACCTCCTGGCGTGACGGTCTAGCTTTCTGCGCCATCATCCACAACTTCCGGCCAGATTTGATATACTAAACAATCGTCTTTACACACTACGATTTTGCAAGCCTCAGCAAGGACAACGTGTACTACAACAATGAACTAGCGTTCACGATCGCAGAGCAACATCTCGGCATACCGTCGCTGCTGGATCCGGCTGATATGGTCAAATACGAGGTGCCGGATCGATTCTCAATTCTCACTTACCTGTCCCAGTACTACCGAGTGTTCAGCAATCAAGAACCAGCAAGTAAGAAGGTCGTCGCAAAGGATACCAAAACCGATGACCTAACATCAAAGGAGGATAGCAACAGTTTGGATATAGTAGGACAATACAAACCGGAGAAAAAAAAAAAAAAAAAGGCCACATTTTCCC] [-] EMBL CNS08M4S [ AACGAAAGGTTACACGCAACGCACCACACCGTCCACGTACCCGTGTCCTTGTTTGCA GTAAATTGAAGTTGATGTTGACTATTCTCATATTTGAAAATTTAGCATGTCCGAGCGTCGTGGAACGAAGGCACTAGAGTTATGGTGCCGCCGAATAGCCGAGGGCTACAAGGATGTTAAAATCACGAACATGAGCACCTCCTGGCGTGACGGTCTAGCTTTCTGCGCCATCATCCACAACTTCCGGCCAGATTTGATATACTAAACAATCGTCTTTACACACTACGATTTTGCAAGCCTCAGCAAGGACAACGTGTACTACAACAATGGACTAGCGTTCACGATCGCAGAGCAACATCTCGGCATACCGTCGCTGCTGGATCCGGCTGATATGGTCAAATACGAGGTGCCGGATCGATTCTCAATTCTCACTTACCTGTCCCAGTACTACCGAGTGTTCAGCAATCAAGAACCAGCAAGTAAGAAGGTCGTCGCAAAGGATACCAAAACCGATGACCTAACATCAAAGGAGGATAGCAACAG ] consensusID : consensus_4662#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 691 fasta sequence [CCGCACACTCATCGTCGGCTCTCGTCTCAAAACAAACAAATCGTGATCGAATCGTGCTGAATATGTTTGCTGGCGTACGTATATGTGGCAAAAGTGATATGTAGTGCTCCACAGTGCAGTAGTGTTATTTTGAATCTATCGAAACCCAGCTAGTAAAGAACATCCCCCGAAACCCCATTCACTTACGAACGATCGCTATAAAACCAACCTTCAATTGAGTTAGACAACATTTGGCGAGCTTTTCTTGTTCTCACACTCACAGCGAACGAAAGTTGACACGCAACGCACCGCACCGTCCACGTACCCGTGTCCTTGTTTGCAGTAAATTGAAGTTGATGTTGACTATTCTCATATTTGAAAATTTAGCATGTCCGAGCGTCGTGGAACGAAGGCACTAGAGTTATGGTGCCGCCGAATAGCCGAGGGCTACAAGGATGTTAAAATCACGAACATGAGCACCTCCTGGCGTGACGGTCTAGCTTTCTGCGCCATCATCCACAACTTCCGGCCAGATTTGATCGATTTTGCAAGCCTCAGCAAGGACAACGTGTACTACAACAATGAACTAGCGTTCACGATCGCAGAGCAACATCTCGGCATACCGTCGCTGCTGGATCCGGCTGATATGGTCAAATACGAGGTGCCGGATCGATTCTCAATTCTCACTTACCTGTCCCAGTACTACCGAGTG] [+] EMBL BM655964 [CCGCACACTCATCGTCGGCTCTCGTCTCAAAACAAACAAATCGTGATCGAATCGTGCTGAATATGTTTGCTGGCGTACGTATATGTGGCAAAAGTGATATGTAGTGCTCCACAGTGCAGTAGTGTTATTTTGAATCTATCGAAACCCAGCTAGTAAAGAACATCCCCCGAAACCCCATTCACTTACGAACGATCGCTATAAAACCAACCTTCAATTGAGTTAGACAACATTTGGCGAGCTTTTCTTGTTCTCACACTCACAGCGAACGAAAGTTGACACGCAACGCACCGCACCGTCCACGTACCCGTGTCCTTGTTTGCAGTAAATTGAAGTTGATGTTGACTATTCTCATATTTGAAAATTTAGCATGTCCGAGCGTCGTGGAACGAAGGCACTAGAGTTATGGTGCCGCCGAATAGCCGAGGGCTACAAGGATGTTAAAATCACGAACATGAGCACCTCCTGGCGTGACGGTCTAGCTTTCTGCGCCATCATCCACAACTTCCGGCCAGATTTGATCGATTTTGCAAGCCTCAGCAAGGACAACGTGTACTACAACAATGAACTAGCGTTCACGATCGCAGAGCAACATCTCGGCATACCGTCGCTGCTGGATCCGGCTGATATGGTCAAATACGAGGTGCCGGATCGATTCTCAATTCTCACTTACCTGTCCCAGTACTACCGAGTG] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_4662#0 --TCACACTCATCGTCGGCTCTCGTCTCAAAACAAACAAATCGTGATCGAATCGTGCTGA 58 consensus_4662#1 CCGCACACTCATCGTCGGCTCTCGTCTCAAAACAAACAAATCGTGATCGAATCGTGCTGA 60 ********************************************************* consensus_4662#0 ATATGTTTGCTGGCGTACGTATATGTGGCAAAAGTGATATGTTGTGCCCCACAGTGCAGT 118 consensus_4662#1 ATATGTTTGCTGGCGTACGTATATGTGGCAAAAGTGATATGTAGTGCTCCACAGTGCAGT 120 ****************************************** **** ************ consensus_4662#0 AGTGTTATTTTGAATCTATCGAAACCCAGCTAGTATAGAACATCCCCCAAAACCCCATTC 178 consensus_4662#1 AGTGTTATTTTGAATCTATCGAAACCCAGCTAGTAAAGAACATCCCCCGAAACCCCATTC 180 *********************************** ************ *********** consensus_4662#0 ACTAACGAACGATCGTTATAAAAACAACCTTCAATTGAGTTAGACAACATTTGGCGAGCT 238 consensus_4662#1 ACTTACGAACGATCGCTATAAAACCAACCTTCAATTGAGTTAGACAACATTTGGCGAGCT 240 *** *********** ******* ************************************ consensus_4662#0 TTTCTTGTTCTCACACTCACAGCGAACGAAAGTTGACACGCAACGCACCACACCGTCCAC 298 consensus_4662#1 TTTCTTGTTCTCACACTCACAGCGAACGAAAGTTGACACGCAACGCACCGCACCGTCCAC 300 ************************************************* ********** consensus_4662#0 GTACCCGTGTCCTTGTTTGCACGTAAATTGAAGTTGATGTTGACTATTCTCATATTTGAA 358 consensus_4662#1 GTACCCGTGTCCTTGTTTGCA-GTAAATTGAAGTTGATGTTGACTATTCTCATATTTGAA 359 ********************* ************************************** consensus_4662#0 AATTTAGCATGTCCGAGCGTCGTGGAACGAAGGCACTAGAGTTATGGTGCCGCCGAATAG 418 consensus_4662#1 AATTTAGCATGTCCGAGCGTCGTGGAACGAAGGCACTAGAGTTATGGTGCCGCCGAATAG 419 ************************************************************ consensus_4662#0 CCGAGGGCTACAAGGATGTTAAAATCACGAACATGAGCACCTCCTGGCGTGACGGTCTAG 478 consensus_4662#1 CCGAGGGCTACAAGGATGTTAAAATCACGAACATGAGCACCTCCTGGCGTGACGGTCTAG 479 ************************************************************ consensus_4662#0 CTTTCTGCGCCATCATCCACAACTTCCGGCCAGATTTGATATACTAAACAATCGTCTTTA 538 consensus_4662#1 CTTTCTGCGCCATCATCCACAACTTCCGGCCAGATTTGAT-------------------- 519 **************************************** consensus_4662#0 CACACTACGATTTTGCAAGCCTCAGCAAGGACAACGTGTACTACAACAATGAACTAGCGT 598 consensus_4662#1 -------CGATTTTGCAAGCCTCAGCAAGGACAACGTGTACTACAACAATGAACTAGCGT 572 ***************************************************** consensus_4662#0 TCACGATCGCAGAGCAACATCTCGGCATACCGTCGCTGCTGGATCCGGCTGATATGGTCA 658 consensus_4662#1 TCACGATCGCAGAGCAACATCTCGGCATACCGTCGCTGCTGGATCCGGCTGATATGGTCA 632 ************************************************************ consensus_4662#0 AATACGAGGTGCCGGATCGATTCTCAATTCTCACTTACCTGTCCCAGTACTACCGAGTGT 718 consensus_4662#1 AATACGAGGTGCCGGATCGATTCTCAATTCTCACTTACCTGTCCCAGTACTACCGAGTG- 691 *********************************************************** consensus_4662#0 TCAGCAATCAAGAACCAGCAAGTAAGAAGGTCGTCGCAAAGGATACCAAAACCGATGACC 778 consensus_4662#1 ------------------------------------------------------------ consensus_4662#0 TAACATCAAAGGAGGATAGCAACAGTTTGGATATAGTAGGACAATACAAACCGGAGAAAA 838 consensus_4662#1 ------------------------------------------------------------ consensus_4662#0 AAAAAAAAAAAAAGGCCACATTTTCCC 865 consensus_4662#1 --------------------------- |
Copyright Wed Dec 3 12:11:56 CET 2003 Hubert Wassner (hubert.wassner@noos.fr) | ||||