cluster # 4669

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Anopheles gambiae
cluster # 4669 cluster # 4669 Sequences # 3 consensus # 2

see consensus multiple alignment with clustalw

Direct access to contigs :

consensus_4669#0 length = 860 sequences # 2

consensus_4669#1 length = 501 sequences # 1

consensusID : consensus_4669#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 2
consensus length = 860
fasta sequence

                              [CCGCCCACGCGTCCGCCACCCACTACCAGACGTACTGCGTCGAAATCAAACCGAAGCAGGGCTGGCTGGCGTACGAATTCTGGGAGGGGTGCCCCTTCCCCCGGAGCCGCTGTCCAACGGTGGTGGGGACCTTCGGAAGTGCCGTTACTGTTTGCATCAATATTTAAAGCTCCAAAAGAAATCGATAGCAAAGATTAGTAAATACTGTCCTCTGGATCTCTACTCCGGTAAACCCGTTCGTGTTCTGCAAGCCGTAAAGGGCCTTATCGGTGCGCCGCAGAACAACTTTAAAATACTGAAAAATGGCAAGGTCGTGTACGACGACAAGCGGGAAAAGTCCATGTTCAATCGGATACTGCGTGAAATGTTTCCGCGCGACGGTCGCACAAAGGATGAGAGAAGCACAATTTTCATGAATCTGATAAAGGAGATTTTGCTGAAAGATTTTACCACAAACGATGAGCATTGCGATCGGAAGCTGTTGAGCATCAAGAAGGATCGGAAGAAGAAGGATAAAAACCAGCTTCACGAACGAGCCTGCAACCCCGTCAATCAGCAGTTTCTTCCGCAAAGTTGCGCCCTCCGACAGATCCTAGACGTGCAGTTGTTAGTGAAGTCAAGCATTTCTACGATCGATCCATCGAAGCTGAACAAATCACGATCCCGATCCGTACAGCTATATTAGACGGAAAATTGTACGAACAAAGTATCTTCACCTANCCAGGGAGGACCGCACTTGTACGAATGGGCGCGNGCANCAAGTCGCACCAACTGGCCGAAACGGGTTCCCTTTCTTGTGCCCGAGTACCTGTCCGAGGAAGGAACCAGTATTCACCTCCGGTGCGAAACGGGCCCTGAAC]

[+] EMBL BM617216             [CCGCCCACGCGTCCGCCACCCACTACCAGACGTACTGCGTCGAAATCAAACCGAAGCAGGGCTGGCTGGCGTACGAATTCTGGGAGGGGTGCCCCTTCCCCCGGAGCCGCTGTCCAACGGTGGTGGGGACCTTCGGAAGTGCCGTTACTGTTTGCATCAATATTTAAAGCTCCAAAAGAAATCGATAGCAAAGATTAGTAAATACTGTCCTCTGGATCTCTACTCCGGTAAACCCGTTCGTGTTCTGCAAGCCGTAAAGGGCCTTATCGGTGCGCCGCAGAACAACTTTAAAATACTGAAAAATGGCAAGGTCGTGTACGACGACAAGCGGGAAAAGTCCATGTTCAATCGGATACTGCGTGAAATGTTTCCGCGCGACGGTCGCACAAAGGATGAGAGAAGCACAATTTTCATGAATCTGATAAAGGAGATTTTGCTGAAAGATTTTACCACAAACGATGAGCATTGCGATCGGAAGCTGTTGAGCATCAAGAAGGATCGGAAGAAGAAGGATAAAAACCAGCTTCACGAACGAGCCTGCAACCCCGTCAATCAGCAGTTTCTTCCGCAAAG                                                                                                                                                                                                                                                                                               ]
[+] EMBL AL932191             [                                                                                                                                                                    aatcGCCCCAGGATNAATCGATAGC AAGATTAGTAAATACTGTCCTCTGGATCTCTACTCCGGTAAACCCGTTCGTGTTCTGCAAGCCGTAAAGGGCCTTATCGGTGCGCCGCAGAACAACTTTAAAATACTGAAAAATGGCAAGGTCGTGTACGACGACAAGCGGGAAAAGTCCATGTTCAATCGGATACTGCGTGAAATGTTTCCGCGCGACGGTCGCACAAAGGATGAGAGAAGCACAATTTTCATGAATCTGATAAAGGAGATTTTGCTGAAAGATTTTACCACAAACGATGAGCATTGCGATCGGAAGCTGTTGAGCATCAAGAAGGATCGGAAGAAGAAGGATAAAAACCAGCTTCACGAACGAGCCTGCAACCCCGTCAATCAGCAGTTTCTTCCGCAAAGTTGCGCCCTCCGACAGATCCTAGACGTGCAGTTGTTAGTGAAGTCAAGCATTTCTACGATCGATCCATCGAAGCTGAACAAATCACGATCCCGATCCGTACAGCTATATTAGACGGAAAATTGTACGAACAAAGTATCTTCACCTANCCAGGGAGGACCGCACTTGTACGAATGGGCGCGNGCANCAAGTCGCACCAACTGGCCGAAACGGGTTCCCTTTCTTGTGCCCGAGTACCTGTCCGAGGAAGGAACCAGTATTCACCTCCGGTGCGAAACGGGCCCTGAAC]




>consensus_4669#0
CCGCCCACGCGTCCGCCACCCACTACCAGACGTACTGCGTCGAAATCAAACCGAAGCAGG
GCTGGCTGGCGTACGAATTCTGGGAGGGGTGCCCCTTCCCCCGGAGCCGCTGTCCAACGG
TGGTGGGGACCTTCGGAAGTGCCGTTACTGTTTGCATCAATATTTAAAGCTCCAAAAGAA
ATCGATAGCAAAGATTAGTAAATACTGTCCTCTGGATCTCTACTCCGGTAAACCCGTTCG
TGTTCTGCAAGCCGTAAAGGGCCTTATCGGTGCGCCGCAGAACAACTTTAAAATACTGAA
AAATGGCAAGGTCGTGTACGACGACAAGCGGGAAAAGTCCATGTTCAATCGGATACTGCG
TGAAATGTTTCCGCGCGACGGTCGCACAAAGGATGAGAGAAGCACAATTTTCATGAATCT
GATAAAGGAGATTTTGCTGAAAGATTTTACCACAAACGATGAGCATTGCGATCGGAAGCT
GTTGAGCATCAAGAAGGATCGGAAGAAGAAGGATAAAAACCAGCTTCACGAACGAGCCTG
CAACCCCGTCAATCAGCAGTTTCTTCCGCAAAGTTGCGCCCTCCGACAGATCCTAGACGT
GCAGTTGTTAGTGAAGTCAAGCATTTCTACGATCGATCCATCGAAGCTGAACAAATCACG
ATCCCGATCCGTACAGCTATATTAGACGGAAAATTGTACGAACAAAGTATCTTCACCTAN
CCAGGGAGGACCGCACTTGTACGAATGGGCGCGNGCANCAAGTCGCACCAACTGGCCGAA
ACGGGTTCCCTTTCTTGTGCCCGAGTACCTGTCCGAGGAAGGAACCAGTATTCACCTCCG
GTGCGAAACGGGCCCTGAAC

consensusID : consensus_4669#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 501
fasta sequence

                              [AAACCAGCTTCACGAACGCGCCTGCAACCCGGTCAATCAGCAGTTTCTTCCCCAAAGTTGCGCCCTCCGACAGATCCTAGACGTGCAGTTGTTAGTGAAGTCAAGCATTTCTACGATCGATCCATCGAAGCTGAACAAATCGCGATCCGATCCGTACAGCTATATAGACGAAATCTACGAAAAGTATCTCACCTACCAGGAGGACGCACTGTACGATGGGCGCGGCAGCAGTCGCACCACCTGGCCGAACGGTTCCTTCTGTGCTGAGTACCTGTCCGAGGAGGAACAGTATCAGCTCGGTGCGACGGCCCTGGACTGCTCGATAATGATCACGTTCCGGCGGCTGTCCGGTGCCGAGGAGAGCAGCCTAACTGACACAGCACGGAATCACATCGTCTCGATCGAGGGTATGAAGTTTATCGTCAACGTTACGATCACCGATCTCGATCCAAAATCGCACAAACACTACGCCAAGTACGTGGGAACAGCTAGCGTCGTCTG]

[+] EMBL BM618946             [AAACCAGCTTCACGAACGCGCCTGCAACCCGGTCAATCAGCAGTTTCTTCCCCAAAGTTGCGCCCTCCGACAGATCCTAGACGTGCAGTTGTTAGTGAAGTCAAGCATTTCTACGATCGATCCATCGAAGCTGAACAAATCGCGATCCGATCCGTACAGCTATATAGACGAAATCTACGAAAAGTATCTCACCTACCAGGAGGACGCACTGTACGATGGGCGCGGCAGCAGTCGCACCACCTGGCCGAACGGTTCCTTCTGTGCTGAGTACCTGTCCGAGGAGGAACAGTATCAGCTCGGTGCGACGGCCCTGGACTGCTCGATAATGATCACGTTCCGGCGGCTGTCCGGTGCCGAGGAGAGCAGCCTAACTGACACAGCACGGAATCACATCGTCTCGATCGAGGGTATGAAGTTTATCGTCAACGTTACGATCACCGATCTCGATCCAAAATCGCACAAACACTACGCCAAGTACGTGGGAACAGCTAGCGTCGTCTG]




>consensus_4669#1
AAACCAGCTTCACGAACGCGCCTGCAACCCGGTCAATCAGCAGTTTCTTCCCCAAAGTTG
CGCCCTCCGACAGATCCTAGACGTGCAGTTGTTAGTGAAGTCAAGCATTTCTACGATCGA
TCCATCGAAGCTGAACAAATCGCGATCCGATCCGTACAGCTATATAGACGAAATCTACGA
AAAGTATCTCACCTACCAGGAGGACGCACTGTACGATGGGCGCGGCAGCAGTCGCACCAC
CTGGCCGAACGGTTCCTTCTGTGCTGAGTACCTGTCCGAGGAGGAACAGTATCAGCTCGG
TGCGACGGCCCTGGACTGCTCGATAATGATCACGTTCCGGCGGCTGTCCGGTGCCGAGGA
GAGCAGCCTAACTGACACAGCACGGAATCACATCGTCTCGATCGAGGGTATGAAGTTTAT
CGTCAACGTTACGATCACCGATCTCGATCCAAAATCGCACAAACACTACGCCAAGTACGT
GGGAACAGCTAGCGTCGTCTG

consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_4669#0      CCGCCCACGCGTCCGCCACCCACTACCAGACGTACTGCGTCGAAATCAAACCGAAGCAGG 60
consensus_4669#1      ------------------------------------------------------------
                                                                                  

consensus_4669#0      GCTGGCTGGCGTACGAATTCTGGGAGGGGTGCCCCTTCCCCCGGAGCCGCTGTCCAACGG 120
consensus_4669#1      ------------------------------------------------------------
                                                                                  

consensus_4669#0      TGGTGGGGACCTTCGGAAGTGCCGTTACTGTTTGCATCAATATTTAAAGCTCCAAAAGAA 180
consensus_4669#1      ------------------------------------------------------------
                                                                                  

consensus_4669#0      ATCGATAGCAAAGATTAGTAAATACTGTCCTCTGGATCTCTACTCCGGTAAACCCGTTCG 240
consensus_4669#1      ------------------------------------------------------------
                                                                                  

consensus_4669#0      TGTTCTGCAAGCCGTAAAGGGCCTTATCGGTGCGCCGCAGAACAACTTTAAAATACTGAA 300
consensus_4669#1      ------------------------------------------------------------
                                                                                  

consensus_4669#0      AAATGGCAAGGTCGTGTACGACGACAAGCGGGAAAAGTCCATGTTCAATCGGATACTGCG 360
consensus_4669#1      ------------------------------------------------------------
                                                                                  

consensus_4669#0      TGAAATGTTTCCGCGCGACGGTCGCACAAAGGATGAGAGAAGCACAATTTTCATGAATCT 420
consensus_4669#1      ------------------------------------------------------------
                                                                                  

consensus_4669#0      GATAAAGGAGATTTTGCTGAAAGATTTTACCACAAACGATGAGCATTGCGATCGGAAGCT 480
consensus_4669#1      ------------------------------------------------------------
                                                                                  

consensus_4669#0      GTTGAGCATCAAGAAGGATCGGAAGAAGAAGGATAAAAACCAGCTTCACGAACGAGCCTG 540
consensus_4669#1      ------------------------------------AAACCAGCTTCACGAACGCGCCTG 24
                                                          ****************** *****

consensus_4669#0      CAACCCCGTCAATCAGCAGTTTCTTCCGCAAAGTTGCGCCCTCCGACAGATCCTAGACGT 600
consensus_4669#1      CAACCCGGTCAATCAGCAGTTTCTTCCCCAAAGTTGCGCCCTCCGACAGATCCTAGACGT 84
                      ****** ******************** ********************************

consensus_4669#0      GCAGTTGTTAGTGAAGTCAAGCATTTCTACGATCGATCCATCGAAGCTGAACAAATCACG 660
consensus_4669#1      GCAGTTGTTAGTGAAGTCAAGCATTTCTACGATCGATCCATCGAAGCTGAACAAATCGCG 144
                      ********************************************************* **

consensus_4669#0      ATCCCGATCCGTACAGCTATATTAGACGGAAAATTGTACGAACAAAGTATCTTCACCTAN 720
consensus_4669#1      ATCC-GATCCGTACAGCTATAT-AGACGAAA---TCTACGAA--AAGTATCT-CACCTAC 196
                      **** ***************** ***** **   * ******  ******** ****** 

consensus_4669#0      CCAGGGAGGACCGCACTTGTACGAATGGGCGCGNGCANCAAGTCGCACCAACTGGCCGAA 780
consensus_4669#1      C--AGGAGGAC-GCACT-GTACGA-TGGGCGCGG-CAGCA-GTCGCACCACCTGGCCGAA 249
                      *   ******* ***** ****** ********  ** ** ********* *********

consensus_4669#0      ACGGGTTCCCTTTCTTGTGCCCGAGTACCTGTCCGAGGAAGGAACCAGTATTCACCTCCG 840
consensus_4669#1      --CGGTTCCTTC---TGTGCT-GAGTACCTGTCCGAGGAGGAA--CAGTATCAGCT--CG 299
                         ****** *    *****  ***************** * *  ******   *   **

consensus_4669#0      GTGCGAAACGGGCCCTGAAC---------------------------------------- 860
consensus_4669#1      GTGCGA---CGGCCCTGGACTGCTCGATAATGATCACGTTCCGGCGGCTGTCCGGTGCCG 356
                      ******    ******* **                                        

consensus_4669#0      ------------------------------------------------------------
consensus_4669#1      AGGAGAGCAGCCTAACTGACACAGCACGGAATCACATCGTCTCGATCGAGGGTATGAAGT 416
                                                                                  

consensus_4669#0      ------------------------------------------------------------
consensus_4669#1      TTATCGTCAACGTTACGATCACCGATCTCGATCCAAAATCGCACAAACACTACGCCAAGT 476
                                                                                  

consensus_4669#0      -------------------------
consensus_4669#1      ACGTGGGAACAGCTAGCGTCGTCTG 501