These datas are free for academic use only, please contact me for any other use. Anopheles gambiae see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_4670#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 945 fasta sequence [GCAAGAATTCCCGAGGTTAAAAGCAATCAGGCGAACAACATTCAAAGGTTTTCCCGCTCGCACTTTTTCTGCTCTAATGAGCATTACTAGTAGGCTGTGGTGCTGTTTTAGAACAACGCGCCGTCAGTAATGTGTTGTGCTGGTTAGGTAGAATTGGTGATAGACAAAAAATGGGCCACACATTTAATTAGCATTGGAATTGGTCCCTCTCTCTCTCTCTCTCTCTTTACTGGCCGAAAACAACGATCGTGGAACGGATTGCGACTGCGCTTTGCGGGCGCATAATTACGGCGTACGTAACGTCCATTGGAATCCTTAGCGTGTAACAGTAGTGTAAGCAAAAACACACAAATCAGTTTTAGCAGTTTGCTTATCCGCGCGACAAAGATAACAAACAAANATGGGGGACAAAGACGAACGACAGCCACACAGTGGAAACCGAGTGAGTTTGCTAACATTAGGTAATAGTCAGTACTAGTNAGTGGTCAGTAGTAGTCAAGTNACNACAGANACATCGGANGAAGAACAAGAAGCACACAACATTAGCCACAGCAATANAGCGATACAAAAGAGCCAAACAACCACCAAAGGTANGATTTCATACAAAGCCACTTCACCACCAAACCATANATACAAACAATAGCACACGANCAGCAAAAGCCNGAAGGATTGGCACACGGAATGGAAAACACANGNAATCCCATGCTCACATAATCCGGCCAGAANGNACGTAAATAAAACGTCAGTCCCACAAGAAACTNTGAAACGACGAAAGTGAACTTCACGATTCGGNGTTGTCGCGGNGTCGGNAAGGTGTCTACGATGATTANGAAGAGAGAAATNACACCGCAATTTTNTATTTCANAACACACAACAACAACGGGGNGTGTGAGGGCGAANATANCCTAGCGAGGGGTATATACATACCGGNAGGTGAAGAGAGGG] [+] EMBL AL932192 [GCAAGAATTCCCGAGGTTAAAAGCAATCAGGCGAACAACATTCAAAGGTTTTCCCGCTCGCACTTTTTCTGCTCTAATGAGCATTACTAGTAGGCTGTGGTGCTGTTTTAGAACAACGCGCCGTCAGTAATGTGTTGTGCTGGTTAGGTAGAATTGGTGATAGACAAAAAATGGGCCACACATTTAATTAGCATTGGAATTGGTCCCTCTCTCTCTCTCTCTCTCTTTACTGGCCGAAAACAACGATCGTGGAACGGATTGCGACTGCGCTTTGCGGGCGCATAATTACGGCGTACGTAACGTCCATTGGAATCCTTAGCGTGTAACAGTAGTGTAAGCAAAAACACACAAATCAGTTTTAGCAGTTTGCTTATCCGCGCGACAAAGATAACAAACAAANATGGGGGACAAAGACGAACGACAGCCACACAGTGGAAACCGAGTGAGTTTGCTAACATTAGGTAATAGTCAGTACTAGTNAGTGGTCAGTAGTAGTCAAGTNACNACAGANACATCGGANGAAGAACAAGAAGCACACAACATTAGCCACAGCAATANAGCGATACAAAAGAGCCAAACAACCACCAAAGGTANGATTTCATACAAAGCCACTTCACCACCAAACCATANATACAAACAATAGCACACGANCAGCAAAAGCCNGAAGGATTGGCACACGGAATGGAAAACACANGNAATCCCATGCTCACATAATCCGGCCAGAANGNACGTAAATAAAACGTCAGTCCCACAAGAAACTNTGAAACGACGAAAGTGAACTTCACGATTCGGNGTTGTCGCGGNGTCGGNAAGGTGTCTACGATGATTANGAAGAGAGAAATNACACCGCAATTTTNTATTTCANAACACACAACAACAACGGGGNGTGTGAGGGCGAANATANCCTAGCGAGGGGTATATACATACCGGNAGGTGAAGAGAGGG] consensusID : consensus_4670#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 405 fasta sequence [AAAAAGCATTTGCATTTTTTCACATAATTTTATATATTTTTTTTGTCGTCCCTTCATCATCCGTTGTCTTTCTTTTTCGTATTCCTTTTTCTCTCTCTCGTTTCAATACCACCCTGGGTGGGATTTTTATATAAGTATGTGTGTTGTGCTGGTTAGGTGAATTGGTGATAGACAAAAAATGGGCCACACATTTAATTAGCATTGGAATTGGTCCCTCTCTCTCTCTCTCTCTCTTTACTGGCCGAAAACAACGATCGTGGAACGGATTGCGACTGCGCTTTGCGGGCGCATAATTACCGCGTACGTAACGTCCATTGGAATCCTTAGCGTGTAACAGTAGTGTAAGCAAAAACACACAAATCAATTTTAGCAGTTGCTTATCGCGCGGAAAAGATAACAAACAAA] [+] EMBL BX618276 [AAAAAGCATTTGCATTTTTTCACATAATTTTATATATTTTTTTTGTCGTCCCTTCATCATCCGTTGTCTTTCTTTTTCGTATTCCTTTTTCTCTCTCTCGTTTCAATACCACCCTGGGTGGGATTTTTATATAAGTATGTGTGTTGTGCTGGTTAGGTGAATTGGTGATAGACAAAAAATGGGCCACACATTTAATTAGCATTGGAATTGGTCCCTCTCTCTCTCTCTCTCTCTTTACTGGCCGAAAACAACGATCGTGGAACGGATTGCGACTGCGCTTTGCGGGCGCATAATTACCGCGTACGTAACGTCCATTGGAATCCTTAGCGTGTAACAGTAGTGTAAGCAAAAACACACAAATCAATTTTAGCAGTTGCTTATCGCGCGGAAAAGATAACAAACAAA] consensusID : consensus_4670#2 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 380 fasta sequence [AAAAAAAAAAACACATTCCATCCAGTAGTGATGCAACACAAAGCACAGAATGGCAAGCAATCAGGCGAACAAGATTCAAAGGTTTTCCCGCTCGCACTTTTTCTGCTCTAATGAGCATTACTAGTAGGCTGTGGTGCTGTTTTAGAACAACGCGCCGTCAGTAATGTGTTGTGCTGGTTAGGTGAATTGGTGATAGACAAAAAATGGGCCACACATTTAATTAGCATTGGAATTGGTCCCTCTCTCTCTCTCTCTCTCTTTACTGGCCGAAAACAACGATCGTGGAACGGATTGCGACTGCGCTTTGCGGGCGCATAATTACGGCGTACGTAACGTCCATTGGAATCCTTAGCGTGTAACAGTAGTGTAAGCAAAAACAC] [-] EMBL BX622464 [AAAAAAAAAAACACATTCCATCCAGTAGTGATGCAACACAAAGCACAGAATGGCAAGCAATCAGGCGAACAAGATTCAAAGGTTTTCCCGCTCGCACTTTTTCTGCTCTAATGAGCATTACTAGTAGGCTGTGGTGCTGTTTTAGAACAACGCGCCGTCAGTAATGTGTTGTGCTGGTTAGGTGAATTGGTGATAGACAAAAAATGGGCCACACATTTAATTAGCATTGGAATTGGTCCCTCTCTCTCTCTCTCTCTCTTTACTGGCCGAAAACAACGATCGTGGAACGGATTGCGACTGCGCTTTGCGGGCGCATAATTACGGCGTACGTAACGTCCATTGGAATCCTTAGCGTGTAACAGTAGTGTAAGCAAAAACAC] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_4670#0 --------------------------------GCAAGA---ATTCCCGAGGTTAAAAGCA 25 consensus_4670#2 AAAAAAAAAAACACATTCCATCCAGTAGTGATGCAACACA-AAGCACAGAATGGCAAGCA 59 consensus_4670#1 ----------------AAAAAGCATTTGCATTTTTTCACATAATTTTATATATTTTTTTT 44 * * consensus_4670#0 ATCAGGCGAACAACATTCAAAGGTTTTCCCGCTCGCACTTTTTCTGCTCTAATGAGCATT 85 consensus_4670#2 ATCAGGCGAACAAGATTCAAAGGTTTTCCCGCTCGCACTTTTTCTGCTCTAATGAGCATT 119 consensus_4670#1 GTCGTCCCTTCATCATCCGTTGTCTTTCTTTTTCGTATTCCTTTTTCTCTCTCTCGTTTC 104 ** * ** ** * * **** *** * * ** * **** * * consensus_4670#0 ACTAGTAGGCTGTGGTGCTGTTTTAGAACAACGCGCCGTCAGTAATGTGTTGTGCTGGTT 145 consensus_4670#2 ACTAGTAGGCTGTGGTGCTGTTTTAGAACAACGCGCCGTCAGTAATGTGTTGTGCTGGTT 179 consensus_4670#1 AATACCACCCTG-GGTGGGATTTTTATATAA-GTAT--------GTGTGTTGTGCTGGTT 154 * ** * *** **** **** * ** * *************** consensus_4670#0 AGGTAGAATTGGTGATAGACAAAAAATGGGCCACACATTTAATTAGCATTGGAATTGGTC 205 consensus_4670#2 AGGT-GAATTGGTGATAGACAAAAAATGGGCCACACATTTAATTAGCATTGGAATTGGTC 238 consensus_4670#1 AGGT-GAATTGGTGATAGACAAAAAATGGGCCACACATTTAATTAGCATTGGAATTGGTC 213 **** ******************************************************* consensus_4670#0 CCTCTCTCTCTCTCTCTCTCTTTACTGGCCGAAAACAACGATCGTGGAACGGATTGCGAC 265 consensus_4670#2 CCTCTCTCTCTCTCTCTCTCTTTACTGGCCGAAAACAACGATCGTGGAACGGATTGCGAC 298 consensus_4670#1 CCTCTCTCTCTCTCTCTCTCTTTACTGGCCGAAAACAACGATCGTGGAACGGATTGCGAC 273 ************************************************************ consensus_4670#0 TGCGCTTTGCGGGCGCATAATTACGGCGTACGTAACGTCCATTGGAATCCTTAGCGTGTA 325 consensus_4670#2 TGCGCTTTGCGGGCGCATAATTACGGCGTACGTAACGTCCATTGGAATCCTTAGCGTGTA 358 consensus_4670#1 TGCGCTTTGCGGGCGCATAATTACCGCGTACGTAACGTCCATTGGAATCCTTAGCGTGTA 333 ************************ *********************************** consensus_4670#0 ACAGTAGTGTAAGCAAAAACACACAAATCAGTTTTAGCAGTTTGCTTATCCGCGCGACAA 385 consensus_4670#2 ACAGTAGTGTAAGCAAAAACAC-------------------------------------- 380 consensus_4670#1 ACAGTAGTGTAAGCAAAAACACACAAATCAATTTTAGCAGTT--GCTTATCGCGCGGAAA 391 ********************** consensus_4670#0 AGATAACAAACAAANATGGGGGACAAAGACGAACGACAGCCACACAGTGGAAACCGAGTG 445 consensus_4670#2 ------------------------------------------------------------ consensus_4670#1 AGATAACAAACAAA---------------------------------------------- 405 consensus_4670#0 AGTTTGCTAACATTAGGTAATAGTCAGTACTAGTNAGTGGTCAGTAGTAGTCAAGTNACN 505 consensus_4670#2 ------------------------------------------------------------ consensus_4670#1 ------------------------------------------------------------ consensus_4670#0 ACAGANACATCGGANGAAGAACAAGAAGCACACAACATTAGCCACAGCAATANAGCGATA 565 consensus_4670#2 ------------------------------------------------------------ consensus_4670#1 ------------------------------------------------------------ consensus_4670#0 CAAAAGAGCCAAACAACCACCAAAGGTANGATTTCATACAAAGCCACTTCACCACCAAAC 625 consensus_4670#2 ------------------------------------------------------------ consensus_4670#1 ------------------------------------------------------------ consensus_4670#0 CATANATACAAACAATAGCACACGANCAGCAAAAGCCNGAAGGATTGGCACACGGAATGG 685 consensus_4670#2 ------------------------------------------------------------ consensus_4670#1 ------------------------------------------------------------ consensus_4670#0 AAAACACANGNAATCCCATGCTCACATAATCCGGCCAGAANGNACGTAAATAAAACGTCA 745 consensus_4670#2 ------------------------------------------------------------ consensus_4670#1 ------------------------------------------------------------ consensus_4670#0 GTCCCACAAGAAACTNTGAAACGACGAAAGTGAACTTCACGATTCGGNGTTGTCGCGGNG 805 consensus_4670#2 ------------------------------------------------------------ consensus_4670#1 ------------------------------------------------------------ consensus_4670#0 TCGGNAAGGTGTCTACGATGATTANGAAGAGAGAAATNACACCGCAATTTTNTATTTCAN 865 consensus_4670#2 ------------------------------------------------------------ consensus_4670#1 ------------------------------------------------------------ consensus_4670#0 AACACACAACAACAACGGGGNGTGTGAGGGCGAANATANCCTAGCGAGGGGTATATACAT 925 consensus_4670#2 ------------------------------------------------------------ consensus_4670#1 ------------------------------------------------------------ consensus_4670#0 ACCGGNAGGTGAAGAGAGGG 945 consensus_4670#2 -------------------- consensus_4670#1 -------------------- |
Copyright Wed Dec 3 12:11:56 CET 2003 Hubert Wassner (hubert.wassner@noos.fr) | ||||