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These datas are free for academic use only, please contact me for any other use. Anopheles gambiae see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_4673#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 2 consensus length = 1395 fasta sequence
[TCATCTTGGGCAGCTGCAGCAACAGATGCAAGATTTGCAGCTACAGTCACAACAGCAGCAACTGAAAGGGGAATTCGGAGATAACTTGTTCGGAACGAAGCAACCGATAGTTAGTGTGGGCGACCAGGAAACAGATGAACAGGATCTGGGATCGCTCGAACATTTCAACTACTACTTTAACGCACCGGGTGGCAATAGCAACAGTAGCAATATGAAAATGACTTGCGATTCTGCAGGAGGTGATAACATCGCAGCAGGGATGGTATCACCATCAGTCGGTACTCCGGAAGAAGGCAATCCCGGCGGCGTAAGCATTGGTGGCGATGAGCTGCAGCGACCGCAGCAACCACCGATCGGAACCCCTTCCAGCAAGAGTATTCAACAGCAGCGGTTACAGCAGAATGGAACGCCTATCTCATCAGTTGGATCGATACTCTACCCTGGCACGGCCGACAGTCCGGCCTCGTCGGTTTCTGTGTTCGATGGCATATCTTCGTCGCTGAGTAGTCAGACACACTCGTTCGACGATCTTTACACTGGCTTGTTGGCCACTGCCTCGCCACCATCGTCAATCAGCGGCGGTATGGAAGGAAATACGCAACTCAACATTCAACAGTTGCATCATCAGGTAAGTTCTGACCCAGTACCGTTTAGCGGCAGTGGATGTGTTACTTCAAACGACCTACCGGAAGCCAGCCATGCAAGAAATCCAACAGACCACACCGAGAGCTCTACCGCGTTAAGCAATAAGTAAAAGTAAT-----AAG--ACAACTCTTATACGCCGTTCACAGACAGTTCATGCAGCAAGTAGAAAACTAGCGAACGCCTTATCTAACCGCAGGACGCAGCGATTATGTGCTGACTGAAGGAAACGGCTTTAAAGTGAGGTGTTAATTTAAACGTACGTCTAGTAGCCGTTGACAAACTTTTGCACAATAATTGAAAGATAGTTTTAATTTTGCTGCTGCCAACGAATAGCAATTTCTTCGCCCGTATTAAAAATGCTTTTAAAAGGCCGCGAAACAACATCCTTACCTAAATGTACACTTTAGATCGTCATTTTCACGTAAAGTAAAATATTAATTTGGTCAATGAGGGCAAATCGCGATTGTAGCAACTGTAGAACTGGCTTCCAGCCGTTGGATTTAAACTTGGTTAACTCGGGCTAGTGGCGCGAAGAATTATAGCAAACGAGAAATATTTCGAAAAATATCATCATTACACAGGGGGCAGAGCTACTGTCGATAGAACTGCCGAGCGGAAAACTTTTTGTATATACAATTCGACAAGTCATGGAAACTTAAAGGCCACAATGCCGCAGTTGCTAGAATGGNTTGCCACATACGTGTGCGGGCAANGGTTGAACGTTGAAGATAACAGAAATAATGGTGTATAGAA]
[+] EMBL BX606209 [TCATCTTGGGCAGCTGCAGCAACAGATGCAAGATTTGCAGCTACAGTCACAACAGCAGCAACTGAAAGGGGAATTCGGAGATAACTTGTTCGGAACGAAGCAACCGATAGTTAGTGTGGGCGACCAGGAAACAGATGAACAGGATCTGGGATCGCTCGAACATTTCAACTACTACTTTAACGCACCGGGTGGCAATAGCAACAGTAGCAATATGAAAATGACTTGCGATTCTGCAGGAGGTGATAACATCGCAGCAGGGATGGTATCACCATCAGTCGGTACTCCGGAAGAAGGCAATCCCGGCGGCGTAAGCATTGGTGGCGATGAGCTGCAGCGACCGCAGCAACCACCGATCGGAACCCCTTCCAGCAAGAGTATTCAACAGCAGCGGTTACAGCAGAATGGAACGCCTATCTCATCAGTTGGATCGATACTCTACCCTGGCACGGCCGACAGTCCGGCCTCGTCGGTTTCTGTGTTCGATGGCATATCTTCGTCGCTGAGTAGTCAGACACACTCGTTCGACGATCTTTACACTGGCTTGTTGGCCACTGCCTCGCCACCATCGTCAATCAGCGGCGGTATGGAAGGAAATACGCAACTCAACATTCAACAGTTGCATCATCAGGTAAGTTCTGACCCAGTACCGTTTAGCGGCAGTGGATGTGTTACTTCAAACGACCTACCGGAAGCCAGCCATGCAAGAAATCCAACAGACCACACCGAGAGCTCTACCGCGTTAAGCAATAAGTAAAAGTAAT AAG ACAACTCTTATACGCCGTTCACAGACAGTTCATGCAGCAAG ]
[+] EMBL BX624092 [ CATCACCAGGTAAGTTCTGACCCAGTACCGTTTAGCGGCAGTGGATGTGTTACTTCAAACGACCTACCGGAAGCCAGCCATGCAAGAAATCCAACAGACCACACCGAGAGCTCTACCGCGTTAAGCAATAAGTAAAAGTAATAGTAAAAGTAACAACTCTTATACGCCGTTCACAGACAGTTCAGACAGCAAGTAGAAAACTAGCGAACGCCTTATCTAACCGCAGGACGCAGCGATTATGTGCTGACTGAAGGAAACGGCTTTAAAGTGAGGTGTTAATTTAAACGTACGTCTAGTAGCCGTTGACAAACTTTTGCACAATAATTGAAAGATAGTTTTAATTTTGCTGCTGCCAACGAATAGCAATTTCTTCGCCCGTATTAAAAATGCTTTTAAAAGGCCGCGAAACAACATCCTTACCTAAATGTACACTTTAGATCGTCATTTTCACGTAAAGTAAAATATTAATTTGGTCAATGAGGGCAAATCGCGATTGTAGCAACTGTAGAACTGGCTTCCAGCCGTTGGATTTAAACTTGGTTAACTCGGGCTAGTGGCGCGAAGAATTATAGCAAACGAGAAATATTTCGAAAAATATCATCATTACACAGGGGGCAGAGCTACTGTCGATAGAACTGCCGAGCGGAAAACTTTTTGTATATACAATTCGACAAGTCATGGAAACTTAAAGGCCACAATGCCGCAGTTGCTAGAATGGNTTGCCACATACGTGTGCGGGCAANGGTTGAACGTTGAAGATAACAGAAATAATGGTGTATAGAA]
consensusID : consensus_4673#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 391 fasta sequence
[GCCGAGGTTATTCGACGATCTTTACACTGGCTTGTTGGCACTGCTCGCCACCATCGTCAATCAGCGGCGGTATGGAAGGAAATACGCAACTCAACATTCAACAGTTGCGTCATCAGGTAAGTTCTGAGCCAGTACGTTTAGCAGCAGTGGATGTGTTACTTCAAACGACTAACGGAAGCCAGCATGGAGAAATCCAAAGAACACACCGAGAGCTCTACCGGCGGTTAAGCNATAAGGTAAAAGTAATAAGACAACTCTTATACGCCGTTCACAGACAGTTCAGGCAGCAAGTAGAAAACTAGCGAACGCCTTATCTAACCGCAGGACGCAGCGATTATGTGCTGACTGGAGGAAACGGGTTTAAACGTGAGGTGTTAATTTAAACGTACGT]
[+] EMBL AL930635 [GCCGAGGTTATTCGACGATCTTTACACTGGCTTGTTGGCACTGCTCGCCACCATCGTCAATCAGCGGCGGTATGGAAGGAAATACGCAACTCAACATTCAACAGTTGCGTCATCAGGTAAGTTCTGAGCCAGTACGTTTAGCAGCAGTGGATGTGTTACTTCAAACGACTAACGGAAGCCAGCATGGAGAAATCCAAAGAACACACCGAGAGCTCTACCGGCGGTTAAGCNATAAGGTAAAAGTAATAAGACAACTCTTATACGCCGTTCACAGACAGTTCAGGCAGCAAGTAGAAAACTAGCGAACGCCTTATCTAACCGCAGGACGCAGCGATTATGTGCTGACTGGAGGAAACGGGTTTAAACGTGAGGTGTTAATTTAAACGTACGT]
consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment
consensus_4673#0 TCATCTTGGGCAGCTGCAGCAACAGATGCAAGATTTGCAGCTACAGTCACAACAGCAGCA 60
consensus_4673#1 ------------------------------------------------------------
consensus_4673#0 ACTGAAAGGGGAATTCGGAGATAACTTGTTCGGAACGAAGCAACCGATAGTTAGTGTGGG 120
consensus_4673#1 ------------------------------------------------------------
consensus_4673#0 CGACCAGGAAACAGATGAACAGGATCTGGGATCGCTCGAACATTTCAACTACTACTTTAA 180
consensus_4673#1 ------------------------------------------------------------
consensus_4673#0 CGCACCGGGTGGCAATAGCAACAGTAGCAATATGAAAATGACTTGCGATTCTGCAGGAGG 240
consensus_4673#1 ------------------------------------------------------------
consensus_4673#0 TGATAACATCGCAGCAGGGATGGTATCACCATCAGTCGGTACTCCGGAAGAAGGCAATCC 300
consensus_4673#1 ------------------------------------------------------------
consensus_4673#0 CGGCGGCGTAAGCATTGGTGGCGATGAGCTGCAGCGACCGCAGCAACCACCGATCGGAAC 360
consensus_4673#1 ------------------------------------------------------------
consensus_4673#0 CCCTTCCAGCAAGAGTATTCAACAGCAGCGGTTACAGCAGAATGGAACGCCTATCTCATC 420
consensus_4673#1 ------------------------------------------------------------
consensus_4673#0 AGTTGGATCGATACTCTACCCTGGCACGGCCGACAGTCCGGCCTCGTCGGTTTCTGTGTT 480
consensus_4673#1 ------------------------------------------------------------
consensus_4673#0 CGATGGCATATCTTCGTCGCTGAGTAGTCAGACACACTCGTTCGACGATCTTTACACTGG 540
consensus_4673#1 ------------------------------GCCGAGGTTATTCGACGATCTTTACACTGG 30
* * * ********************
consensus_4673#0 CTTGTTGGCCACTGCCTCGCCACCATCGTCAATCAGCGGCGGTATGGAAGGAAATACGCA 600
consensus_4673#1 CTTGTTGGC-ACTGC-TCGCCACCATCGTCAATCAGCGGCGGTATGGAAGGAAATACGCA 88
********* ***** ********************************************
consensus_4673#0 ACTCAACATTCAACAGTTGCATCATCAGGTAAGTTCTGACCCAGTACCGTTTAGCGGCAG 660
consensus_4673#1 ACTCAACATTCAACAGTTGCGTCATCAGGTAAGTTCTGAGCCAGTAC-GTTTAGCAGCAG 147
******************** ****************** ******* ******* ****
consensus_4673#0 TGGATGTGTTACTTCAAACGACCTACCGGAAGCCAGCCATGCAAGAAATCCAACAGACCA 720
consensus_4673#1 TGGATGTGTTACTTCAAACGAC-TAACGGAAGCCAGC-ATG-GAGAAATCCAA-AGAACA 203
********************** ** *********** *** ********** *** **
consensus_4673#0 CACCGAGAGCTCTACCGC--GTTAAGCAATAAG-TAAAAGTAATAAGACAACTCTTATAC 777
consensus_4673#1 CACCGAGAGCTCTACCGGCGGTTAAGCNATAAGGTAAAAGTAATAAGACAACTCTTATAC 263
***************** ******* ***** **************************
consensus_4673#0 GCCGTTCACAGACAGTTCATGCAGCAAGTAGAAAACTAGCGAACGCCTTATCTAACCGCA 837
consensus_4673#1 GCCGTTCACAGACAGTTCAGGCAGCAAGTAGAAAACTAGCGAACGCCTTATCTAACCGCA 323
******************* ****************************************
consensus_4673#0 GGACGCAGCGATTATGTGCTGACTGAAGGAAACGGCTTTAAA-GTGAGGTGTTAATTTAA 896
consensus_4673#1 GGACGCAGCGATTATGTGCTGACTGGAGGAAACGGGTTTAAACGTGAGGTGTTAATTTAA 383
************************* ********* ****** *****************
consensus_4673#0 ACGTACGTCTAGTAGCCGTTGACAAACTTTTGCACAATAATTGAAAGATAGTTTTAATTT 956
consensus_4673#1 ACGTACGT---------------------------------------------------- 391
********
consensus_4673#0 TGCTGCTGCCAACGAATAGCAATTTCTTCGCCCGTATTAAAAATGCTTTTAAAAGGCCGC 1016
consensus_4673#1 ------------------------------------------------------------
consensus_4673#0 GAAACAACATCCTTACCTAAATGTACACTTTAGATCGTCATTTTCACGTAAAGTAAAATA 1076
consensus_4673#1 ------------------------------------------------------------
consensus_4673#0 TTAATTTGGTCAATGAGGGCAAATCGCGATTGTAGCAACTGTAGAACTGGCTTCCAGCCG 1136
consensus_4673#1 ------------------------------------------------------------
consensus_4673#0 TTGGATTTAAACTTGGTTAACTCGGGCTAGTGGCGCGAAGAATTATAGCAAACGAGAAAT 1196
consensus_4673#1 ------------------------------------------------------------
consensus_4673#0 ATTTCGAAAAATATCATCATTACACAGGGGGCAGAGCTACTGTCGATAGAACTGCCGAGC 1256
consensus_4673#1 ------------------------------------------------------------
consensus_4673#0 GGAAAACTTTTTGTATATACAATTCGACAAGTCATGGAAACTTAAAGGCCACAATGCCGC 1316
consensus_4673#1 ------------------------------------------------------------
consensus_4673#0 AGTTGCTAGAATGGNTTGCCACATACGTGTGCGGGCAANGGTTGAACGTTGAAGATAACA 1376
consensus_4673#1 ------------------------------------------------------------
consensus_4673#0 GAAATAATGGTGTATAGAA 1395
consensus_4673#1 -------------------
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| Copyright Wed Dec 3 12:11:56 CET 2003 Hubert Wassner (hubert.wassner@noos.fr) | ||||