These datas are free for academic use only, please contact me for any other use. Anopheles gambiae see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_4686#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 2 consensus length = 983 fasta sequence [CGACACGTTGACGATACTGTTGGAGAACATTGCGCGCGTGATTGAGGTCAATCAGGCGATTATAGAAAATTGCTACGGACCGGGCCGCCTGGTGCAGATTTGTCGCATACTGCAGCGGGAGTGCGACGACGAGGTGACCAAGTGTGTGCAGGAGTTTTGCCGCAACCGACAGACGGGCAGAAGGATTGCACAGATTAATGATTACATCAAGAATGCGGGCGGCGGATCGACGATGGGACACTATCGCAAACCGTCCGGCGGTGGTGGCGGATCGATCGATAAGCTAAATGCGAAAGATATCGATAGTTTGATCGGGGAGATCACGATCATGCACTCGAGGGCGGAACTGTACGTGAAGTTCATCAAGCGAAGATGTGCTAACGATTTAGAGAAAAGTTCCCTCCCGGCGGAGGTCAAACAAGAGCGGCTGGCCGAACTGCAAACCCTTCTGCAAAAGTCACGCCTCAACACACAAATGCAGGAGCTGCTCAGCACCTACCTTCTGTTCGAGCGCTACTTCATGGAGGAAAGCGTGCTGAAAGCGATCGGGCTGGACAAGCTCGAGGAGGGCCAGCAGTGCTCCAGCATGCTGGACGACGTGTTCTTTATCGTGCGCAAGTGCATCCGCCGCTCGAACGGTACGCAGTCGCTCGATGGCGTCTGTGCGGTGATTAACAACGCTGCCAGCTGCCTGGAGGAAGACTACATGAAAGCGCTCAAAGCGCCACTGAAAGCNGGCTACCCGACCGGGTACATCGATCTCGCCCAGGCGTACAATGCATTCCAAAGTTCGATCCAGCAGGGCCGGCTGCAGACGAGCGATTCGGACCAGGCGCGCGGCCGGTTCATCGCTGCGCTGAACAATGCCGACATGTCGACCGAGTTTATCGAAACGCTCTGGAAGATGATGACCGAGGAGACGGAAATAACGTTCCCGGGCATGAGCGCACGGGAGAAGGAAAAGCTGGACAGCTGTCTGGGCG] [+] EMBL BX602551 [CGACACGTTGACGATACTGTTGGAGAACATTGCGCGCGTGATTGAGGTCAATCAGGCGATTATAGAAAATTGCTACGGACCGGGCCGCCTGGTGCAGATTTGTCGCATACTGCAGCGGGAGTGCGACGACGAGGTGACCAAGTGTGTGCAGGAGTTTTGCCGCAACCGACAGACGGGCAGAAGGATTGCACAGATTAATGATTACATCAAGAATGCGGGCGGCGGATCGACGATGGGACACTATCGCAAACCGTCCGGCGGTGGTGGCGGATCGATCGATAAGCTAAATGCGAAAGATATCGATAGTTTGATCGGGGAGATCACGATCATGCACTCGAGGGCGGAACTGTACGTGAAGTTCATCAAGCGAAGATGTGCTAACGATTTAGAGAAAAGTTCCCTCCCGGCGGAGGTCAAACAAGAGCGGCTGGCCGAACTGCAAACCCTTCTGCAAAAGTCACGCCTCAACACACAAATGCAGGAGCTGCTCAGCACCTACCTTCTGTTCGAGCGCTACTTCATGGAGGAAAGCGTGCTGAAAGCGATCGGGCTGGACAAGCTCGAG ] [+] EMBL BX621741 [ GATCGACGATGGGACACTATCGCAAACCGTCCGGCGGTGGTGGCGGATCGATCGATAAGCTAAATGCGAAAGATATCGATAGTTTGATCGGGGAGATCACGATCATGCACTCGAGGGCGGAATTGTACGTGAAGTTCATCAAGCGAAGATGTGCTAACGATTTAGAGAAAAGTTCCCTCCCGGCGGAGGTCAAACAAGAGCGGCTGGCCGAACTGCAAACCCTTCTGCAAAAGTCACGCCTCAACACACAAATGCAGGAGCTGCTCAGCACCTACCTTCTGTTCGAGCGCTACTTCATGGAGGAAAGCGTGCTGAAAGCGATCGGGCTGGACAAGCTCGAGGAGGGCCAGCAGTGCTCCAGCATGCTGGACGACGTGTTCTTTATCGTGCGCAAGTGCATCCGCCGCTCGAACGGTACGCAGTCGCTCGATGGCGTCTGTGCGGTGATTAACAACGCTGCCAGCTGCCTGGAGGAAGACTACATGAAAGCGCTCAAAGCGCCACTGAAAGCNGGCTACCCGACCGGGTACATCGATCTCGCCCAGGCGTACAATGCATTCCAAAGTTCGATCCAGCAGGGCCGGCTGCAGACGAGCGATTCGGACCAGGCGCGCGGCCGGTTCATCGCTGCGCTGAACAATGCCGACATGTCGACCGAGTTTATCGAAACGCTCTGGAAGATGATGACCGAGGAGACGGAAATAACGTTCCCGGGCATGAGCGCACGGGAGAAGGAAAAGCTGGACAGCTGTCTGGGCG] consensusID : consensus_4686#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 883 fasta sequence [GCAAGAATTCGGCACGAGGATCAGGCGATTATAGAAAATTGCTACGGACCGGGCCGCCTGGTGCAGATTTGTCGCATACTGCAGCGGGAGTGCGACGACGAGGTGACCAAGTGTGTGCAGGAGTTTTGCCGCAACCGACAGACGGGCAGAAGGATTGCACAGATTAATGATTACATCAAGAATGCGGGCGGCGGATCGACGATGGGACACTATCGCAAACCGTCCGGGCGGTGGTGGCGGATCGATCGATAAGCTAAATGCGAAAGATATCGATAGTTTGATCGGGGAGATCACGATCATGCACTCGAGGGCGGAACTGTACGTGAAGTTCATCAAGCGAAGATGTGCTAACGATTTAGAGAAAAGTTCCCTCCCGGCGGAGGTCAAACAAGAGCGGCTGGCCGAACTGCAAACCCTTCTGCAAAAGTCACGCCTCGAACACACAAATGCAGGAGCTGCTCAGCGACCTACCTTCTGTTCGAGCGCTACTTCATGGAGGAAAGCGTGCTGAAAGCGATCGGGCTGGACAAGCTCGAGGGAGGGCCAGCAGTGCTCCAGCATGCTGGACGACGTGTCCTTATCGGTGCGCAAAGTGCATCCGCCGGTTCGAAACGGTACGCCAGGTCGGCTCGGATGGACGTCCTGGTGCNGGTGGATTTAAACAANACGGCTTTAGCCAAGTTTGCACTTTGGAAGGGAAAGACTTACCATGAAAAGGGCGCCTCNAAAAGCGGCCCAACATTGGAAANAGGGCCGGGNTTAACCCCGAGAAGCCGGGGGTTACNCTTCGGAATTCTNACGGCCCAAGGCGCTTNACAGATGGGATTTCCCAAAAGGTTCGAATTCCCCAGNNAAGGGGACACGGATTGGAAGAGACANGAGA] [+] EMBL BX467883 [GCAAGAATTCGGCACGAGGATCAGGCGATTATAGAAAATTGCTACGGACCGGGCCGCCTGGTGCAGATTTGTCGCATACTGCAGCGGGAGTGCGACGACGAGGTGACCAAGTGTGTGCAGGAGTTTTGCCGCAACCGACAGACGGGCAGAAGGATTGCACAGATTAATGATTACATCAAGAATGCGGGCGGCGGATCGACGATGGGACACTATCGCAAACCGTCCGGGCGGTGGTGGCGGATCGATCGATAAGCTAAATGCGAAAGATATCGATAGTTTGATCGGGGAGATCACGATCATGCACTCGAGGGCGGAACTGTACGTGAAGTTCATCAAGCGAAGATGTGCTAACGATTTAGAGAAAAGTTCCCTCCCGGCGGAGGTCAAACAAGAGCGGCTGGCCGAACTGCAAACCCTTCTGCAAAAGTCACGCCTCGAACACACAAATGCAGGAGCTGCTCAGCGACCTACCTTCTGTTCGAGCGCTACTTCATGGAGGAAAGCGTGCTGAAAGCGATCGGGCTGGACAAGCTCGAGGGAGGGCCAGCAGTGCTCCAGCATGCTGGACGACGTGTCCTTATCGGTGCGCAAAGTGCATCCGCCGGTTCGAAACGGTACGCCAGGTCGGCTCGGATGGACGTCCTGGTGCNGGTGGATTTAAACAANACGGCTTTAGCCAAGTTTGCACTTTGGAAGGGAAAGACTTACCATGAAAAGGGCGCCTCNAAAAGCGGCCCAACATTGGAAANAGGGCCGGGNTTAACCCCGAGAAGCCGGGGGTTACNCTTCGGAATTCTNACGGCCCAAGGCGCTTNACAGATGGGATTTCCCAAAAGGTTCGAATTCCCCAGNNAAGGGGACACGGATTGGAAGAGACANGAGA] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_4686#0 CGACACGTTGACGATACTGTTGGAGAACATTGCGCGCGTGATTGAGGTCAATCAGGCGAT 60 consensus_4686#1 -------------------------------GCAAGAATTCGGCACGAGGATCAGGCGAT 29 ** * * * * ********** consensus_4686#0 TATAGAAAATTGCTACGGACCGGGCCGCCTGGTGCAGATTTGTCGCATACTGCAGCGGGA 120 consensus_4686#1 TATAGAAAATTGCTACGGACCGGGCCGCCTGGTGCAGATTTGTCGCATACTGCAGCGGGA 89 ************************************************************ consensus_4686#0 GTGCGACGACGAGGTGACCAAGTGTGTGCAGGAGTTTTGCCGCAACCGACAGACGGGCAG 180 consensus_4686#1 GTGCGACGACGAGGTGACCAAGTGTGTGCAGGAGTTTTGCCGCAACCGACAGACGGGCAG 149 ************************************************************ consensus_4686#0 AAGGATTGCACAGATTAATGATTACATCAAGAATGCGGGCGGCGGATCGACGATGGGACA 240 consensus_4686#1 AAGGATTGCACAGATTAATGATTACATCAAGAATGCGGGCGGCGGATCGACGATGGGACA 209 ************************************************************ consensus_4686#0 CTATCGCAAACCGTCCGG-CGGTGGTGGCGGATCGATCGATAAGCTAAATGCGAAAGATA 299 consensus_4686#1 CTATCGCAAACCGTCCGGGCGGTGGTGGCGGATCGATCGATAAGCTAAATGCGAAAGATA 269 ****************** ***************************************** consensus_4686#0 TCGATAGTTTGATCGGGGAGATCACGATCATGCACTCGAGGGCGGAACTGTACGTGAAGT 359 consensus_4686#1 TCGATAGTTTGATCGGGGAGATCACGATCATGCACTCGAGGGCGGAACTGTACGTGAAGT 329 ************************************************************ consensus_4686#0 TCATCAAGCGAAGATGTGCTAACGATTTAGAGAAAAGTTCCCTCCCGGCGGAGGTCAAAC 419 consensus_4686#1 TCATCAAGCGAAGATGTGCTAACGATTTAGAGAAAAGTTCCCTCCCGGCGGAGGTCAAAC 389 ************************************************************ consensus_4686#0 AAGAGCGGCTGGCCGAACTGCAAACCCTTCTGCAAAAGTCACGCCTC-AACACACAAATG 478 consensus_4686#1 AAGAGCGGCTGGCCGAACTGCAAACCCTTCTGCAAAAGTCACGCCTCGAACACACAAATG 449 *********************************************** ************ consensus_4686#0 CAGGAGCTGCTCAGC-ACCTACCTTCTGTTCGAGCGCTACTTCATGGAGGAAAGCGTGCT 537 consensus_4686#1 CAGGAGCTGCTCAGCGACCTACCTTCTGTTCGAGCGCTACTTCATGGAGGAAAGCGTGCT 509 *************** ******************************************** consensus_4686#0 GAAAGCGATCGGGCTGGACAAGCTCGAGG-AGGGCCAGCAGTGCTCCAGCATGCTGGACG 596 consensus_4686#1 GAAAGCGATCGGGCTGGACAAGCTCGAGGGAGGGCCAGCAGTGCTCCAGCATGCTGGACG 569 ***************************** ****************************** consensus_4686#0 ACGTGTTCTTTATCGTGCGCAA-GTGCATCCGCCGCTCGAACGGTACGCAGTCGCTCGAT 655 consensus_4686#1 ACGTGTCCTTATCGGTGCGCAAAGTGCATCCGCCG--------GTTCGAAACGGTACGCC 621 ****** *** ******** ************ ** ** * * ** consensus_4686#0 GGCGTCTGTGCGGTGATTAACAACGCTGCCAGCTGCCTGGAGGAAGACTACATGAAAGCG 715 consensus_4686#1 AG-GTCGGCTCGGATGGACGTCCTGGTGCNGGTGGATTTAAACAANACGGCTTTAG---- 676 * *** * *** * *** * * * * ** ** * * * consensus_4686#0 CTCAAAGCGCCACTGAAAGCNGGCTACCCGACCGGGTACATCGATCTCGCCCAGGCGTAC 775 consensus_4686#1 -CCAAGTTTGCACTTTGGAAGGGAAA---GACTTACCATGAAAAGGGCGCCT-----CNA 727 *** **** ** * *** * * **** consensus_4686#0 AATGCATTCCAAAGTTCGATCCAGCAGGGCCGGCTGCAGACGAGCGATTCGGACCAGGCG 835 consensus_4686#1 AAAGCGGCCCAACATTGGA---AANAGGGCCGGGNTTAACCCCGAGA----AGCCGGGGG 780 ** ** **** ** ** * ******** * * * ** ** ** * consensus_4686#0 CGCGGCCGGTTCATCGCTGCGCTGAACAATGCCGACATGTCGACCGAGTTTATCGAAACG 895 consensus_4686#1 TT---ACNCTTCGGAATTCTNACGGCCCAAGGCGCTTNACAGATGGGATTTCCCAAAAGG 837 * *** * * * * * ** ** * *** * *** * consensus_4686#0 CTCTGGAAGATGATGACCGAGGAGACGGAAATAACGTTCCCGGGCATGAGCGCACGGGAG 955 consensus_4686#1 TTC--GAATTCCCCAGNNAAGGGGACACGGATTGGAAG---AGACANGAGA--------- 883 ** *** *** *** ** * ** *** consensus_4686#0 AAGGAAAAGCTGGACAGCTGTCTGGGCG 983 consensus_4686#1 ---------------------------- |
Copyright Wed Dec 3 12:11:56 CET 2003 Hubert Wassner (hubert.wassner@noos.fr) | ||||