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These datas are free for academic use only, please contact me for any other use. Anopheles gambiae see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_4688#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 2 consensus length = 728 fasta sequence
[CCGCGGACGCGTGGGCGGACGCGTGGGCAGCGACAGAGAGGGCACGTGGGAGAGCAGCAGCAGGAAGGGGGGCGACCATTGCGACAAAAGTGAAACACATTATTCTTTAAGAGTAGTCGGTACACCGATCGGCGCAGTGGTGCGAGAGACGAACGGTGGGAAACATACGGT-GGGAGACGAATACTTCCCGTTGCCCTTTGCCCTCCCTTTTCCTCCACGCAATACAACGGGTAAAAAGCGCGGGTCATAATGATTCCGCTCACGTGATTTGCATTTTCTGTTTTCCGGAAAACCGATTTGAGGATCAATCGGGTTCGAGCGACAAAACCAC-AACAAAAATGCAAACAATCGAATGTATGCGTGTTAAGGCTTTGGTTAGATGTTAGGTTAGGTACTTCCGGTTCTCATCACCTTACAAAAAGAAAAACTTCAAGAGTTGCTCGAGTTGCTTATTAGTTGTTATGATGATTAATATTTCCCTATGTTTTTGTTTAGCGTGTAAGTTTGTTTAGTGTCCTACTATTATTACCAGTCGTTTAATTTGTCGTTAATAGAATTAGCGCGAAAACCTCTCCCCACTCTTATATATATATAAAAAACCCAAACACACAGTACACGCGAGATAGCTACGACACACACACGGAAATCAAATACTACTGTTACTACTAATAATGGCATCACACTACTGAGAAAGAGACTATTTAATCGAAGAAAATAAGAAACAGAGA]
[+] EMBL BM588557 [CCGCGGACGCGTGGGCGGACGCGTGGGCAGCGACAGAGAGGGCACGTGGGAGAGCAGCAGCAGGAAGGGGGGCGACCATTGCGACAAAAGTGAAACACATTATTCTTTAAGAGTAGTCGGTACACCGATCGGCGCAGTGGTGCGAGAGACGAACGGTGGGAAACATACGGT GGGAGACGAATACTTCCCGTTGCCCTTTGCCCTCCCTTTTCCTCCACGCAATACAACGGGTAAAAAGCGCGGGTCATAATGATTCCGCTCACGTGATTTGCATTTTCTGTTTTCCGGAAAACCGATTTGAGGATCAATCGGGTTCGAGCGACAAAACCAC AACAAAAATGCAAACAATCGAATGTATGCGTGTTAAGGCTTTGGTTAGATGTTAGGTTAGGTACTTCCGGTTCTCATCACCTTACAAAAAGAAAAACTTCAAGAGTTGCTCGAGTTGCTTATTAGTTGTTATGATGATTAATATTTCCCTATGTTTTTGTTTAGCGTG ]
[+] EMBL BX609123 [ TAAGAGTAGTCGGTACACCCATTGGCGCAGTGGCGCGAGAGACGAACGGTGTGAAACATACGGTAGGGAGACGAATACTTCCCGTTGCCCTTTGCCCTCCCTTTTCCTCCACGCAATACGACGGGTAAAAAGCGCGGGTCATAATGATTCCGCTCACGTGATTTGCATTTTCTGTTTTCCGGAAAACCGATTTGAGGATCAATCGGGTTCGAGCGACAAAACCACAAAAAAAAATGCAAACAATCGAATGTGTGCGTGTTAACCGAAGGGTTAGATGTTAGGTTAAGTACTTCTGGTTCTCATCACCTTACAAAAAGAAAAACTTCAAGAGTTGCTCGAGTTGCTTATTAGTTGTTATGATGATTAATATTTCCCTATGTTTTTGTTTAGCGCGTAAGTTTGTTTAGTGTCCTACTATTATTACCAGTCGTTTAATTTGTCGTTAATAGAATTAGCGCGAAAACCTCTCCCCACTCTTATATATATATAAAAAACCCAAACACACAGTACACGCGAGATAGCTACGACACACACACGGAAATCAAATACTACTGTTACTACTAATAATGGCATCACACTACTGAGAAAGAGACTATTTAATCGAAGAAAATAAGAAACAGAGA]
consensusID : consensus_4688#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 545 fasta sequence
[CCGCACTCTTATATATAAAAAAAATCCCAAACACACACGTGAGATAGCTATGACACACACACACGGAAATTAAATACTACTGTTACTACTAATAATGGCATCACACTACTGAGAAGAGACTATTTAATCGAAGAAAATAAGAAACAGAGAGAGACAGAGAGTGCGAGATACATAATTGCAAATGAGAACAGATTGTCTTTGGATTTTTTTTTTGGTGGGCAGGTGTGTGTGTGTTGGTTCCACTTCGGTTCGGTTCGGATTACATTTAAGCCTTTCTTCGTGTGCAAAAACAAAGCTGCAATTCGCGCTCTGCCATGGCAAAAGAGGCTCCCGCTTGCTCGATGTCCTCGATCAATCGCTGTCTGTCTGGATGGAAACTGTCGTTAGAAGCCGATCGTCTTTGGGAAGAATCCTCCAATCGGGTTCATCGCTGACCCTCACTCTCTGGGTGTGTGTGTCTGTATAAAATACCGAAAAACGCTTAGCAGCGCTATATATTTGTCTCAATGGACGCGAAACATTGTGTTAGAGAAGGTTGAGCGAAT]
[+] EMBL BM591092 [CCGCACTCTTATATATAAAAAAAATCCCAAACACACACGTGAGATAGCTATGACACACACACACGGAAATTAAATACTACTGTTACTACTAATAATGGCATCACACTACTGAGAAGAGACTATTTAATCGAAGAAAATAAGAAACAGAGAGAGACAGAGAGTGCGAGATACATAATTGCAAATGAGAACAGATTGTCTTTGGATTTTTTTTTTGGTGGGCAGGTGTGTGTGTGTTGGTTCCACTTCGGTTCGGTTCGGATTACATTTAAGCCTTTCTTCGTGTGCAAAAACAAAGCTGCAATTCGCGCTCTGCCATGGCAAAAGAGGCTCCCGCTTGCTCGATGTCCTCGATCAATCGCTGTCTGTCTGGATGGAAACTGTCGTTAGAAGCCGATCGTCTTTGGGAAGAATCCTCCAATCGGGTTCATCGCTGACCCTCACTCTCTGGGTGTGTGTGTCTGTATAAAATACCGAAAAACGCTTAGCAGCGCTATATATTTGTCTCAATGGACGCGAAACATTGTGTTAGAGAAGGTTGAGCGAAT]
consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment
consensus_4688#0 CCGCGGACGCGTGGGCGGACGCGTGGGCAGCGACAGAGAGGGCACGTGGGAGAGCAGCA- 59
consensus_4688#1 CCGCACTCTTATATATAAAAAAAATCCCAAACACACACGTGAGATAGCTATGACACACAC 60
**** * * * ** *** * * * ** **
consensus_4688#0 GCAGGAAGGGGGGCGACCATTGCGACAAAAGTGAAACACATTATTCT-TTAAGAGTAGTC 118
consensus_4688#1 ACACGGAAATTAAATACTACTGTTACTACTAATAATGGCATCACACTACTGAGAAGAGAC 120
** * * ** * ** ** * ** *** * ** * *** ** *
consensus_4688#0 GGTACA-CCGATCGGCGCAGTGGT--GCGAGAGACGAACGGTGGGAAACATACGGTGGGA 175
consensus_4688#1 TATTTAATCGAAGAAAATAAGAAACAGAGAGAGACAGAGAGTGCGAGATACATAATTGCA 180
* * *** * * ******* * *** ** * * * * * *
consensus_4688#0 GACGAATACTTCCCGTTGCCCTTTGCCCTCCCTTTTCCTCCACGCAATACAACGGGTAAA 235
consensus_4688#1 AATGAGAAC---AGATTGTCTTTGGATTTTTTTTTTGGT--GGGCAGGTGTGTGTGTGTT 235
* ** ** *** * ** * * **** * *** * **
consensus_4688#0 AAGCGCGGGTCATAATGATTCCGCTCACGTGATTTGCATTTTCTGTTTTCCGGAAAACCG 295
consensus_4688#1 GGTTCCACTTCGGTTCGGTTCGGATTAC---ATTTAAGCCTTTCTTCGTGTGCAAAAACA 292
* ** * *** * * ** **** ** * * * **** *
consensus_4688#0 ATTTGAGGATCAATCGGGTTCGAGCGACAAAACCACAACAAAAATGCAAACAATCGAATG 355
consensus_4688#1 AAGCTGCAAT---TCGCGCTCTG---------CCATGGCAAAAG---AGGCTCCCGCTTG 337
* ** *** * ** *** ***** * * ** **
consensus_4688#0 TATG-CGTGTTAAGGCTTTGGTTAGATGTTAGGTTAGGTACTTCCGGTTCTCATCACCTT 414
consensus_4688#1 CTCGATGTCCTCGATCAATCGCTGTCTGTCTGGATGGAAACTGTCGTTAGAAGCCGATCG 397
* ** * * * * * *** ** * * *** ** * *
consensus_4688#0 ACAAAAAGAAAAACTTCAAGAGTTGCTCGAGTTGCTTATTAGTTGTTATGATGATTAATA 474
consensus_4688#1 TCTTTGGGAAGAATCCTCCAA-----TCGGGTTCATCGCTGACCCTCAC-----TCTCTG 447
* *** ** * *** *** * * * * * *
consensus_4688#0 TTTCCCTATGTTTTTGTTTAGCGTGTAAGTTTGTTTAGTGTC-CTAC-TATTATTACCAG 532
consensus_4688#1 GGTGTGTGTGTCTGTATAAAATACCGAAAAACGCTTAGCAGCGCTATATATTTGTCTCAA 507
* * *** * * * * ** * **** * *** **** * **
consensus_4688#0 T---CGTTTAATTTGTCGTTAATAGAATTAGCGCGAAAACCTCTCCCCACTCTTATATAT 589
consensus_4688#1 TGGACGCGAAACATTGTGTTAGAGAAGGTTGAGCGAAT---------------------- 545
* ** ** * **** * * * *****
consensus_4688#0 ATATAAAAAACCCAAACACACAGTACACGCGAGATAGCTACGACACACACACGGAAATCA 649
consensus_4688#1 ------------------------------------------------------------
consensus_4688#0 AATACTACTGTTACTACTAATAATGGCATCACACTACTGAGAAAGAGACTATTTAATCGA 709
consensus_4688#1 ------------------------------------------------------------
consensus_4688#0 AGAAAATAAGAAACAGAGA 728
consensus_4688#1 -------------------
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| Copyright Wed Dec 3 12:11:56 CET 2003 Hubert Wassner (hubert.wassner@noos.fr) | ||||