These datas are free for academic use only, please contact me for any other use. Anopheles gambiae see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_4688#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 2 consensus length = 728 fasta sequence [CCGCGGACGCGTGGGCGGACGCGTGGGCAGCGACAGAGAGGGCACGTGGGAGAGCAGCAGCAGGAAGGGGGGCGACCATTGCGACAAAAGTGAAACACATTATTCTTTAAGAGTAGTCGGTACACCGATCGGCGCAGTGGTGCGAGAGACGAACGGTGGGAAACATACGGT-GGGAGACGAATACTTCCCGTTGCCCTTTGCCCTCCCTTTTCCTCCACGCAATACAACGGGTAAAAAGCGCGGGTCATAATGATTCCGCTCACGTGATTTGCATTTTCTGTTTTCCGGAAAACCGATTTGAGGATCAATCGGGTTCGAGCGACAAAACCAC-AACAAAAATGCAAACAATCGAATGTATGCGTGTTAAGGCTTTGGTTAGATGTTAGGTTAGGTACTTCCGGTTCTCATCACCTTACAAAAAGAAAAACTTCAAGAGTTGCTCGAGTTGCTTATTAGTTGTTATGATGATTAATATTTCCCTATGTTTTTGTTTAGCGTGTAAGTTTGTTTAGTGTCCTACTATTATTACCAGTCGTTTAATTTGTCGTTAATAGAATTAGCGCGAAAACCTCTCCCCACTCTTATATATATATAAAAAACCCAAACACACAGTACACGCGAGATAGCTACGACACACACACGGAAATCAAATACTACTGTTACTACTAATAATGGCATCACACTACTGAGAAAGAGACTATTTAATCGAAGAAAATAAGAAACAGAGA] [+] EMBL BM588557 [CCGCGGACGCGTGGGCGGACGCGTGGGCAGCGACAGAGAGGGCACGTGGGAGAGCAGCAGCAGGAAGGGGGGCGACCATTGCGACAAAAGTGAAACACATTATTCTTTAAGAGTAGTCGGTACACCGATCGGCGCAGTGGTGCGAGAGACGAACGGTGGGAAACATACGGT GGGAGACGAATACTTCCCGTTGCCCTTTGCCCTCCCTTTTCCTCCACGCAATACAACGGGTAAAAAGCGCGGGTCATAATGATTCCGCTCACGTGATTTGCATTTTCTGTTTTCCGGAAAACCGATTTGAGGATCAATCGGGTTCGAGCGACAAAACCAC AACAAAAATGCAAACAATCGAATGTATGCGTGTTAAGGCTTTGGTTAGATGTTAGGTTAGGTACTTCCGGTTCTCATCACCTTACAAAAAGAAAAACTTCAAGAGTTGCTCGAGTTGCTTATTAGTTGTTATGATGATTAATATTTCCCTATGTTTTTGTTTAGCGTG ] [+] EMBL BX609123 [ TAAGAGTAGTCGGTACACCCATTGGCGCAGTGGCGCGAGAGACGAACGGTGTGAAACATACGGTAGGGAGACGAATACTTCCCGTTGCCCTTTGCCCTCCCTTTTCCTCCACGCAATACGACGGGTAAAAAGCGCGGGTCATAATGATTCCGCTCACGTGATTTGCATTTTCTGTTTTCCGGAAAACCGATTTGAGGATCAATCGGGTTCGAGCGACAAAACCACAAAAAAAAATGCAAACAATCGAATGTGTGCGTGTTAACCGAAGGGTTAGATGTTAGGTTAAGTACTTCTGGTTCTCATCACCTTACAAAAAGAAAAACTTCAAGAGTTGCTCGAGTTGCTTATTAGTTGTTATGATGATTAATATTTCCCTATGTTTTTGTTTAGCGCGTAAGTTTGTTTAGTGTCCTACTATTATTACCAGTCGTTTAATTTGTCGTTAATAGAATTAGCGCGAAAACCTCTCCCCACTCTTATATATATATAAAAAACCCAAACACACAGTACACGCGAGATAGCTACGACACACACACGGAAATCAAATACTACTGTTACTACTAATAATGGCATCACACTACTGAGAAAGAGACTATTTAATCGAAGAAAATAAGAAACAGAGA] consensusID : consensus_4688#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 545 fasta sequence [CCGCACTCTTATATATAAAAAAAATCCCAAACACACACGTGAGATAGCTATGACACACACACACGGAAATTAAATACTACTGTTACTACTAATAATGGCATCACACTACTGAGAAGAGACTATTTAATCGAAGAAAATAAGAAACAGAGAGAGACAGAGAGTGCGAGATACATAATTGCAAATGAGAACAGATTGTCTTTGGATTTTTTTTTTGGTGGGCAGGTGTGTGTGTGTTGGTTCCACTTCGGTTCGGTTCGGATTACATTTAAGCCTTTCTTCGTGTGCAAAAACAAAGCTGCAATTCGCGCTCTGCCATGGCAAAAGAGGCTCCCGCTTGCTCGATGTCCTCGATCAATCGCTGTCTGTCTGGATGGAAACTGTCGTTAGAAGCCGATCGTCTTTGGGAAGAATCCTCCAATCGGGTTCATCGCTGACCCTCACTCTCTGGGTGTGTGTGTCTGTATAAAATACCGAAAAACGCTTAGCAGCGCTATATATTTGTCTCAATGGACGCGAAACATTGTGTTAGAGAAGGTTGAGCGAAT] [+] EMBL BM591092 [CCGCACTCTTATATATAAAAAAAATCCCAAACACACACGTGAGATAGCTATGACACACACACACGGAAATTAAATACTACTGTTACTACTAATAATGGCATCACACTACTGAGAAGAGACTATTTAATCGAAGAAAATAAGAAACAGAGAGAGACAGAGAGTGCGAGATACATAATTGCAAATGAGAACAGATTGTCTTTGGATTTTTTTTTTGGTGGGCAGGTGTGTGTGTGTTGGTTCCACTTCGGTTCGGTTCGGATTACATTTAAGCCTTTCTTCGTGTGCAAAAACAAAGCTGCAATTCGCGCTCTGCCATGGCAAAAGAGGCTCCCGCTTGCTCGATGTCCTCGATCAATCGCTGTCTGTCTGGATGGAAACTGTCGTTAGAAGCCGATCGTCTTTGGGAAGAATCCTCCAATCGGGTTCATCGCTGACCCTCACTCTCTGGGTGTGTGTGTCTGTATAAAATACCGAAAAACGCTTAGCAGCGCTATATATTTGTCTCAATGGACGCGAAACATTGTGTTAGAGAAGGTTGAGCGAAT] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_4688#0 CCGCGGACGCGTGGGCGGACGCGTGGGCAGCGACAGAGAGGGCACGTGGGAGAGCAGCA- 59 consensus_4688#1 CCGCACTCTTATATATAAAAAAAATCCCAAACACACACGTGAGATAGCTATGACACACAC 60 **** * * * ** *** * * * ** ** consensus_4688#0 GCAGGAAGGGGGGCGACCATTGCGACAAAAGTGAAACACATTATTCT-TTAAGAGTAGTC 118 consensus_4688#1 ACACGGAAATTAAATACTACTGTTACTACTAATAATGGCATCACACTACTGAGAAGAGAC 120 ** * * ** * ** ** * ** *** * ** * *** ** * consensus_4688#0 GGTACA-CCGATCGGCGCAGTGGT--GCGAGAGACGAACGGTGGGAAACATACGGTGGGA 175 consensus_4688#1 TATTTAATCGAAGAAAATAAGAAACAGAGAGAGACAGAGAGTGCGAGATACATAATTGCA 180 * * *** * * ******* * *** ** * * * * * * consensus_4688#0 GACGAATACTTCCCGTTGCCCTTTGCCCTCCCTTTTCCTCCACGCAATACAACGGGTAAA 235 consensus_4688#1 AATGAGAAC---AGATTGTCTTTGGATTTTTTTTTTGGT--GGGCAGGTGTGTGTGTGTT 235 * ** ** *** * ** * * **** * *** * ** consensus_4688#0 AAGCGCGGGTCATAATGATTCCGCTCACGTGATTTGCATTTTCTGTTTTCCGGAAAACCG 295 consensus_4688#1 GGTTCCACTTCGGTTCGGTTCGGATTAC---ATTTAAGCCTTTCTTCGTGTGCAAAAACA 292 * ** * *** * * ** **** ** * * * **** * consensus_4688#0 ATTTGAGGATCAATCGGGTTCGAGCGACAAAACCACAACAAAAATGCAAACAATCGAATG 355 consensus_4688#1 AAGCTGCAAT---TCGCGCTCTG---------CCATGGCAAAAG---AGGCTCCCGCTTG 337 * ** *** * ** *** ***** * * ** ** consensus_4688#0 TATG-CGTGTTAAGGCTTTGGTTAGATGTTAGGTTAGGTACTTCCGGTTCTCATCACCTT 414 consensus_4688#1 CTCGATGTCCTCGATCAATCGCTGTCTGTCTGGATGGAAACTGTCGTTAGAAGCCGATCG 397 * ** * * * * * *** ** * * *** ** * * consensus_4688#0 ACAAAAAGAAAAACTTCAAGAGTTGCTCGAGTTGCTTATTAGTTGTTATGATGATTAATA 474 consensus_4688#1 TCTTTGGGAAGAATCCTCCAA-----TCGGGTTCATCGCTGACCCTCAC-----TCTCTG 447 * *** ** * *** *** * * * * * * consensus_4688#0 TTTCCCTATGTTTTTGTTTAGCGTGTAAGTTTGTTTAGTGTC-CTAC-TATTATTACCAG 532 consensus_4688#1 GGTGTGTGTGTCTGTATAAAATACCGAAAAACGCTTAGCAGCGCTATATATTTGTCTCAA 507 * * *** * * * * ** * **** * *** **** * ** consensus_4688#0 T---CGTTTAATTTGTCGTTAATAGAATTAGCGCGAAAACCTCTCCCCACTCTTATATAT 589 consensus_4688#1 TGGACGCGAAACATTGTGTTAGAGAAGGTTGAGCGAAT---------------------- 545 * ** ** * **** * * * ***** consensus_4688#0 ATATAAAAAACCCAAACACACAGTACACGCGAGATAGCTACGACACACACACGGAAATCA 649 consensus_4688#1 ------------------------------------------------------------ consensus_4688#0 AATACTACTGTTACTACTAATAATGGCATCACACTACTGAGAAAGAGACTATTTAATCGA 709 consensus_4688#1 ------------------------------------------------------------ consensus_4688#0 AGAAAATAAGAAACAGAGA 728 consensus_4688#1 ------------------- |
Copyright Wed Dec 3 12:11:56 CET 2003 Hubert Wassner (hubert.wassner@noos.fr) | ||||