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These datas are free for academic use only, please contact me for any other use. Anopheles gambiae see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_4689#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 2 consensus length = 867 fasta sequence
[CCGCGGACGCGTGGGCCAGAACAAGCAAAGAACTATCCGCCGGATAACAGCGCGGCACTCGTGTGTTAGGTGTGAGTACTTATTTTACGATACTCGACACGGAAAGCGCTCTTAGTTTTCCACCCCCCCCCGGTCAGCCCTTCTAGCCGGGTTTCCGCACAACCGAACAGTGCCAATCAATAGAGTCCGCGTACGTCGAGACGCGCACCGTCTGGCTTGGACGAATGCATAACCGCTTGCACCTCAGCCGCTGTCTGCCTCTGTGTCTTTACCGTTTCACCCTGTGCGTGCGTGTGTGCGTGTCGTGTCCTGCTGCTTTCCCAATATAACATCCCGACTGCCGCGTGAGTGGATTGCTAAATGCGCTCGAATCAGACAGCACGGTTGCCGCACGCTACCTCCAGGGCCTTACAAATACTCCGATAGGTCGTGCCTAACAAATTTGCAGTGAAGCTCCAGCAAGCGGTCTGTCCGTAGCCGCCGAACGCACGATACACGGCAGATTGTTGCGGGTCTTTTGTTTTATCGAGCCAGTAGCAACAAGCGGGAAAGCGAAGAAAAAGAGGAAGAAGTAAGAAGCATCACACGGGCTTCATCTGTCATTCCTCTTTGCCCGATCTCACCAATACAAACCACGCACACAGCCTCACAGACCGTGACACATCGAGCGCGCGCTTACACATCGGGCCTGTTGGGTCGGGAAGAAGAAAGGAAGAAGCAAGCAGCGGAAGCAACAGAAACGCGGCATCCTCTCTCCCTTGTTATTGTTGCTGCCTGACGGACCCCGTTCAGCTATTCGGTGTGACGCCTTTCGCCTCCACATTCATCTACACTCGCCCACCCTCCCTTCCCCGTTGTACGATGCCA]
[+] EMBL BM589817 [CCGCGGACGCGTGGGCCAGAACAAGCAAAGAACTATCCGCCGGATAACAGCGCGGCACTCGTGTGTTAGGTGTGAGTACTTATTTTACGATACTCGACACGGAAAGCGCTCTTAGTTTTCCACCCCCCCCCGGTCAGCCCTTCTAGCCGGGTTTCCGCACAACCGAACAGTGCCAATCAATAGAGTCCGCGTACGTCGAGACGCGCACCGTCTGGCTTGGACGAATGCATAACCGCTTGCACCTCAGCCGCTGTCTGCCTCTGTGTCTTTACCGTTTCACCCTGTGCGTGCGTGTGTGCGTGTCGTGTCCTGCTGCTTTCCCAATATAACATCCCGACTGCCGCGTGAGTGGATTGCTAAATGCGCTCGAATCAGACAGCACGGTTGCCGCACGCTACCTCCAGGGCCTTACAAATACTCCGATAGGTCGTGCCTAACAAATTTGCAGTGAAGCTCCAGCAAGCGGTCTGTCCGTAGCCGCCGAACGCACGATACACGGCAGATTGTTGCGGGTCTTTTGTTTTATCGAGCCAGTAGCAACAAGCGGGAAAGCGAAGAAAAAGAGGAAGAAGTAAGAAGCATCACACGGGCTTCATCTGTCATTCCTCTTTGCCCGATCTCACCAATACAAACCACGCACACAGCCTCACAGACCGTGACACATCGAGCGCGCG ]
[+] EMBL CNS09N3G [ gaagctCCAGAACAAGCAAAGAACTATCCGCCGGATAACAGCGCGGCACTCGTGTGTTAGGTGTGAGTACTTATTTTACGATACTCGACACGGAAAGCGCTCTTAGTTTTCCACCCCCCCCCGGTCAGCCCTTCTAGCCGGGTTTCCGCACAACCGAACAGTGCCAATCAATAGAGTCCGCGTACGTCGAGACGCGCACCGTCTGGCTTGGACGAATGCATAACCGCTTGCACCTCAGCCGCTGTCTGCCTCTGTGTCTTTACCGTTTCACCCTGTGCGTGCGTGTGTGCGTGTCGTGTCCTGCTGCTTTCCCAATATAACATCCCGACTGCCGCGTGAGTGGATTGCTAAATGCGCTCAAATCAGACAGCACGGTTGCCGCACGCTACCTCCAGGGCCTTACAAATACTCCGATAGGTCGTGCCTAACAAATTTGCAGTGAAGCTCCAGCAAGCGGTCTGTCCGTAGCCGCCGAACGCACGATACACGGCAGATTGTTGCGGGTCTTTTGTTTTATCGAGCCAGTTGCAACAAGCGGGAAAGCGAAGAAAAAGAGGAAGAAGTAAGAAGCATCACACGGGCTTCATCTGTCATTCCTCTTTGCCCGATCTCACCAATACAAACCACGCACACAGCCTCACAGACCGTGACACATCGAGCGCGCGCTTACACATCGGGCCTGTTGGGTCGGGAAGAAGAAAGGAAGAAGCAAGCAGCGGAAGCAACAGAAACGCGGCATCCTCTCTCCCTTGTTATTGTTGCTGCCTGACGGACCCCGTTCAGCTATTCGGTGTGACGCCTTTCGCCTCCACATTCATCTACACTCGCCCACCCTCCCTTCCCCGTTGTACGATGCCA]
consensusID : consensus_4689#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 701 fasta sequence
[CCGGGCTTGGGAAAGCCTCCAGAACAAGCAAAGAACTATCCGCCGGATAACAGCGCGGCACTCGTGTGTTAGGTTTGCGTACTTATTTTACGATACTCGACACGGAAAGCGCTCTTAGTTTTCCACCCCCCCCCCCGGTCAGCCCTTCTAGCCGGGTTTCCGCACAACCGAACAGTGCCAATCAATAGAGTCCGCGTACGTCGAGACGCGCACCGTCTGGCTTGGACGAATGCATAACCGCTTGCACCTCAGCCGCTGTCTGCCTCTGTGTCTTTACCGTTTCACCCTGTGCGTGCGTGTGTGCGTGTCGTGTCCTGCTCCTTTCCCAATATAACATCCCGACTGCCGCGTGAGTGGATTGCTAAATGCGCTCGAATCAGACAGCACGGTTGCCGCACGCTACCTCCAGGGCCTTACAAATACTCCGATAGGTCGTGCCTAACAAATTTACAGTGAAGCTCCAGCAAGCGGTCTGTCCGTAGCCGCCGAACGCACGACACACGGCAGATTGTTGCGGGTCTTTTGTTTTATCGAGCCAGTGGCAACAAGCGGGAAAGCGAAGAAAAAGAGGAAGAAGTAAGAAGCATCACACGGGCTTCATCTGTCATTCCTCTTTGCCCGATCTCACCAATACAAACCACGCACACAGCCTTCACAGACCGTGACACATCGAGCGCGCGCTTACACATCGGGCCTGTTGG]
[+] EMBL BM656644 [CCGGGCTTGGGAAAGCCTCCAGAACAAGCAAAGAACTATCCGCCGGATAACAGCGCGGCACTCGTGTGTTAGGTTTGCGTACTTATTTTACGATACTCGACACGGAAAGCGCTCTTAGTTTTCCACCCCCCCCCCCGGTCAGCCCTTCTAGCCGGGTTTCCGCACAACCGAACAGTGCCAATCAATAGAGTCCGCGTACGTCGAGACGCGCACCGTCTGGCTTGGACGAATGCATAACCGCTTGCACCTCAGCCGCTGTCTGCCTCTGTGTCTTTACCGTTTCACCCTGTGCGTGCGTGTGTGCGTGTCGTGTCCTGCTCCTTTCCCAATATAACATCCCGACTGCCGCGTGAGTGGATTGCTAAATGCGCTCGAATCAGACAGCACGGTTGCCGCACGCTACCTCCAGGGCCTTACAAATACTCCGATAGGTCGTGCCTAACAAATTTACAGTGAAGCTCCAGCAAGCGGTCTGTCCGTAGCCGCCGAACGCACGACACACGGCAGATTGTTGCGGGTCTTTTGTTTTATCGAGCCAGTGGCAACAAGCGGGAAAGCGAAGAAAAAGAGGAAGAAGTAAGAAGCATCACACGGGCTTCATCTGTCATTCCTCTTTGCCCGATCTCACCAATACAAACCACGCACACAGCCTTCACAGACCGTGACACATCGAGCGCGCGCTTACACATCGGGCCTGTTGG]
consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment
consensus_4689#0 CCGCGGACGCGTGGGCC---AGAACAAGCAAAGAACTATCCGCCGGATAACAGCGCGGCA 57
consensus_4689#1 CCGGGCTTGGGAAAGCCTCCAGAACAAGCAAAGAACTATCCGCCGGATAACAGCGCGGCA 60
*** * * * *** ****************************************
consensus_4689#0 CTCGTGTGTTAGGTGTGAGTACTTATTTTACGATACTCGACACGGAAAGCGCTCTTAGTT 117
consensus_4689#1 CTCGTGTGTTAGGTTTGCGTACTTATTTTACGATACTCGACACGGAAAGCGCTCTTAGTT 120
************** ** ******************************************
consensus_4689#0 TTCCACCCCCCCCC--GGTCAGCCCTTCTAGCCGGGTTTCCGCACAACCGAACAGTGCCA 175
consensus_4689#1 TTCCACCCCCCCCCCCGGTCAGCCCTTCTAGCCGGGTTTCCGCACAACCGAACAGTGCCA 180
************** ********************************************
consensus_4689#0 ATCAATAGAGTCCGCGTACGTCGAGACGCGCACCGTCTGGCTTGGACGAATGCATAACCG 235
consensus_4689#1 ATCAATAGAGTCCGCGTACGTCGAGACGCGCACCGTCTGGCTTGGACGAATGCATAACCG 240
************************************************************
consensus_4689#0 CTTGCACCTCAGCCGCTGTCTGCCTCTGTGTCTTTACCGTTTCACCCTGTGCGTGCGTGT 295
consensus_4689#1 CTTGCACCTCAGCCGCTGTCTGCCTCTGTGTCTTTACCGTTTCACCCTGTGCGTGCGTGT 300
************************************************************
consensus_4689#0 GTGCGTGTCGTGTCCTGCTGCTTTCCCAATATAACATCCCGACTGCCGCGTGAGTGGATT 355
consensus_4689#1 GTGCGTGTCGTGTCCTGCTCCTTTCCCAATATAACATCCCGACTGCCGCGTGAGTGGATT 360
******************* ****************************************
consensus_4689#0 GCTAAATGCGCTCGAATCAGACAGCACGGTTGCCGCACGCTACCTCCAGGGCCTTACAAA 415
consensus_4689#1 GCTAAATGCGCTCGAATCAGACAGCACGGTTGCCGCACGCTACCTCCAGGGCCTTACAAA 420
************************************************************
consensus_4689#0 TACTCCGATAGGTCGTGCCTAACAAATTTGCAGTGAAGCTCCAGCAAGCGGTCTGTCCGT 475
consensus_4689#1 TACTCCGATAGGTCGTGCCTAACAAATTTACAGTGAAGCTCCAGCAAGCGGTCTGTCCGT 480
***************************** ******************************
consensus_4689#0 AGCCGCCGAACGCACGATACACGGCAGATTGTTGCGGGTCTTTTGTTTTATCGAGCCAGT 535
consensus_4689#1 AGCCGCCGAACGCACGACACACGGCAGATTGTTGCGGGTCTTTTGTTTTATCGAGCCAGT 540
***************** ******************************************
consensus_4689#0 AGCAACAAGCGGGAAAGCGAAGAAAAAGAGGAAGAAGTAAGAAGCATCACACGGGCTTCA 595
consensus_4689#1 GGCAACAAGCGGGAAAGCGAAGAAAAAGAGGAAGAAGTAAGAAGCATCACACGGGCTTCA 600
***********************************************************
consensus_4689#0 TCTGTCATTCCTCTTTGCCCGATCTCACCAATACAAACCACGCACACAGCCT-CACAGAC 654
consensus_4689#1 TCTGTCATTCCTCTTTGCCCGATCTCACCAATACAAACCACGCACACAGCCTTCACAGAC 660
**************************************************** *******
consensus_4689#0 CGTGACACATCGAGCGCGCGCTTACACATCGGGCCTGTTGGGTCGGGAAGAAGAAAGGAA 714
consensus_4689#1 CGTGACACATCGAGCGCGCGCTTACACATCGGGCCTGTTGG------------------- 701
*****************************************
consensus_4689#0 GAAGCAAGCAGCGGAAGCAACAGAAACGCGGCATCCTCTCTCCCTTGTTATTGTTGCTGC 774
consensus_4689#1 ------------------------------------------------------------
consensus_4689#0 CTGACGGACCCCGTTCAGCTATTCGGTGTGACGCCTTTCGCCTCCACATTCATCTACACT 834
consensus_4689#1 ------------------------------------------------------------
consensus_4689#0 CGCCCACCCTCCCTTCCCCGTTGTACGATGCCA 867
consensus_4689#1 ---------------------------------
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| Copyright Wed Dec 3 12:11:56 CET 2003 Hubert Wassner (hubert.wassner@noos.fr) | ||||