These datas are free for academic use only, please contact me for any other use. Anopheles gambiae see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_4689#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 2 consensus length = 867 fasta sequence [CCGCGGACGCGTGGGCCAGAACAAGCAAAGAACTATCCGCCGGATAACAGCGCGGCACTCGTGTGTTAGGTGTGAGTACTTATTTTACGATACTCGACACGGAAAGCGCTCTTAGTTTTCCACCCCCCCCCGGTCAGCCCTTCTAGCCGGGTTTCCGCACAACCGAACAGTGCCAATCAATAGAGTCCGCGTACGTCGAGACGCGCACCGTCTGGCTTGGACGAATGCATAACCGCTTGCACCTCAGCCGCTGTCTGCCTCTGTGTCTTTACCGTTTCACCCTGTGCGTGCGTGTGTGCGTGTCGTGTCCTGCTGCTTTCCCAATATAACATCCCGACTGCCGCGTGAGTGGATTGCTAAATGCGCTCGAATCAGACAGCACGGTTGCCGCACGCTACCTCCAGGGCCTTACAAATACTCCGATAGGTCGTGCCTAACAAATTTGCAGTGAAGCTCCAGCAAGCGGTCTGTCCGTAGCCGCCGAACGCACGATACACGGCAGATTGTTGCGGGTCTTTTGTTTTATCGAGCCAGTAGCAACAAGCGGGAAAGCGAAGAAAAAGAGGAAGAAGTAAGAAGCATCACACGGGCTTCATCTGTCATTCCTCTTTGCCCGATCTCACCAATACAAACCACGCACACAGCCTCACAGACCGTGACACATCGAGCGCGCGCTTACACATCGGGCCTGTTGGGTCGGGAAGAAGAAAGGAAGAAGCAAGCAGCGGAAGCAACAGAAACGCGGCATCCTCTCTCCCTTGTTATTGTTGCTGCCTGACGGACCCCGTTCAGCTATTCGGTGTGACGCCTTTCGCCTCCACATTCATCTACACTCGCCCACCCTCCCTTCCCCGTTGTACGATGCCA] [+] EMBL BM589817 [CCGCGGACGCGTGGGCCAGAACAAGCAAAGAACTATCCGCCGGATAACAGCGCGGCACTCGTGTGTTAGGTGTGAGTACTTATTTTACGATACTCGACACGGAAAGCGCTCTTAGTTTTCCACCCCCCCCCGGTCAGCCCTTCTAGCCGGGTTTCCGCACAACCGAACAGTGCCAATCAATAGAGTCCGCGTACGTCGAGACGCGCACCGTCTGGCTTGGACGAATGCATAACCGCTTGCACCTCAGCCGCTGTCTGCCTCTGTGTCTTTACCGTTTCACCCTGTGCGTGCGTGTGTGCGTGTCGTGTCCTGCTGCTTTCCCAATATAACATCCCGACTGCCGCGTGAGTGGATTGCTAAATGCGCTCGAATCAGACAGCACGGTTGCCGCACGCTACCTCCAGGGCCTTACAAATACTCCGATAGGTCGTGCCTAACAAATTTGCAGTGAAGCTCCAGCAAGCGGTCTGTCCGTAGCCGCCGAACGCACGATACACGGCAGATTGTTGCGGGTCTTTTGTTTTATCGAGCCAGTAGCAACAAGCGGGAAAGCGAAGAAAAAGAGGAAGAAGTAAGAAGCATCACACGGGCTTCATCTGTCATTCCTCTTTGCCCGATCTCACCAATACAAACCACGCACACAGCCTCACAGACCGTGACACATCGAGCGCGCG ] [+] EMBL CNS09N3G [ gaagctCCAGAACAAGCAAAGAACTATCCGCCGGATAACAGCGCGGCACTCGTGTGTTAGGTGTGAGTACTTATTTTACGATACTCGACACGGAAAGCGCTCTTAGTTTTCCACCCCCCCCCGGTCAGCCCTTCTAGCCGGGTTTCCGCACAACCGAACAGTGCCAATCAATAGAGTCCGCGTACGTCGAGACGCGCACCGTCTGGCTTGGACGAATGCATAACCGCTTGCACCTCAGCCGCTGTCTGCCTCTGTGTCTTTACCGTTTCACCCTGTGCGTGCGTGTGTGCGTGTCGTGTCCTGCTGCTTTCCCAATATAACATCCCGACTGCCGCGTGAGTGGATTGCTAAATGCGCTCAAATCAGACAGCACGGTTGCCGCACGCTACCTCCAGGGCCTTACAAATACTCCGATAGGTCGTGCCTAACAAATTTGCAGTGAAGCTCCAGCAAGCGGTCTGTCCGTAGCCGCCGAACGCACGATACACGGCAGATTGTTGCGGGTCTTTTGTTTTATCGAGCCAGTTGCAACAAGCGGGAAAGCGAAGAAAAAGAGGAAGAAGTAAGAAGCATCACACGGGCTTCATCTGTCATTCCTCTTTGCCCGATCTCACCAATACAAACCACGCACACAGCCTCACAGACCGTGACACATCGAGCGCGCGCTTACACATCGGGCCTGTTGGGTCGGGAAGAAGAAAGGAAGAAGCAAGCAGCGGAAGCAACAGAAACGCGGCATCCTCTCTCCCTTGTTATTGTTGCTGCCTGACGGACCCCGTTCAGCTATTCGGTGTGACGCCTTTCGCCTCCACATTCATCTACACTCGCCCACCCTCCCTTCCCCGTTGTACGATGCCA] consensusID : consensus_4689#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 701 fasta sequence [CCGGGCTTGGGAAAGCCTCCAGAACAAGCAAAGAACTATCCGCCGGATAACAGCGCGGCACTCGTGTGTTAGGTTTGCGTACTTATTTTACGATACTCGACACGGAAAGCGCTCTTAGTTTTCCACCCCCCCCCCCGGTCAGCCCTTCTAGCCGGGTTTCCGCACAACCGAACAGTGCCAATCAATAGAGTCCGCGTACGTCGAGACGCGCACCGTCTGGCTTGGACGAATGCATAACCGCTTGCACCTCAGCCGCTGTCTGCCTCTGTGTCTTTACCGTTTCACCCTGTGCGTGCGTGTGTGCGTGTCGTGTCCTGCTCCTTTCCCAATATAACATCCCGACTGCCGCGTGAGTGGATTGCTAAATGCGCTCGAATCAGACAGCACGGTTGCCGCACGCTACCTCCAGGGCCTTACAAATACTCCGATAGGTCGTGCCTAACAAATTTACAGTGAAGCTCCAGCAAGCGGTCTGTCCGTAGCCGCCGAACGCACGACACACGGCAGATTGTTGCGGGTCTTTTGTTTTATCGAGCCAGTGGCAACAAGCGGGAAAGCGAAGAAAAAGAGGAAGAAGTAAGAAGCATCACACGGGCTTCATCTGTCATTCCTCTTTGCCCGATCTCACCAATACAAACCACGCACACAGCCTTCACAGACCGTGACACATCGAGCGCGCGCTTACACATCGGGCCTGTTGG] [+] EMBL BM656644 [CCGGGCTTGGGAAAGCCTCCAGAACAAGCAAAGAACTATCCGCCGGATAACAGCGCGGCACTCGTGTGTTAGGTTTGCGTACTTATTTTACGATACTCGACACGGAAAGCGCTCTTAGTTTTCCACCCCCCCCCCCGGTCAGCCCTTCTAGCCGGGTTTCCGCACAACCGAACAGTGCCAATCAATAGAGTCCGCGTACGTCGAGACGCGCACCGTCTGGCTTGGACGAATGCATAACCGCTTGCACCTCAGCCGCTGTCTGCCTCTGTGTCTTTACCGTTTCACCCTGTGCGTGCGTGTGTGCGTGTCGTGTCCTGCTCCTTTCCCAATATAACATCCCGACTGCCGCGTGAGTGGATTGCTAAATGCGCTCGAATCAGACAGCACGGTTGCCGCACGCTACCTCCAGGGCCTTACAAATACTCCGATAGGTCGTGCCTAACAAATTTACAGTGAAGCTCCAGCAAGCGGTCTGTCCGTAGCCGCCGAACGCACGACACACGGCAGATTGTTGCGGGTCTTTTGTTTTATCGAGCCAGTGGCAACAAGCGGGAAAGCGAAGAAAAAGAGGAAGAAGTAAGAAGCATCACACGGGCTTCATCTGTCATTCCTCTTTGCCCGATCTCACCAATACAAACCACGCACACAGCCTTCACAGACCGTGACACATCGAGCGCGCGCTTACACATCGGGCCTGTTGG] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_4689#0 CCGCGGACGCGTGGGCC---AGAACAAGCAAAGAACTATCCGCCGGATAACAGCGCGGCA 57 consensus_4689#1 CCGGGCTTGGGAAAGCCTCCAGAACAAGCAAAGAACTATCCGCCGGATAACAGCGCGGCA 60 *** * * * *** **************************************** consensus_4689#0 CTCGTGTGTTAGGTGTGAGTACTTATTTTACGATACTCGACACGGAAAGCGCTCTTAGTT 117 consensus_4689#1 CTCGTGTGTTAGGTTTGCGTACTTATTTTACGATACTCGACACGGAAAGCGCTCTTAGTT 120 ************** ** ****************************************** consensus_4689#0 TTCCACCCCCCCCC--GGTCAGCCCTTCTAGCCGGGTTTCCGCACAACCGAACAGTGCCA 175 consensus_4689#1 TTCCACCCCCCCCCCCGGTCAGCCCTTCTAGCCGGGTTTCCGCACAACCGAACAGTGCCA 180 ************** ******************************************** consensus_4689#0 ATCAATAGAGTCCGCGTACGTCGAGACGCGCACCGTCTGGCTTGGACGAATGCATAACCG 235 consensus_4689#1 ATCAATAGAGTCCGCGTACGTCGAGACGCGCACCGTCTGGCTTGGACGAATGCATAACCG 240 ************************************************************ consensus_4689#0 CTTGCACCTCAGCCGCTGTCTGCCTCTGTGTCTTTACCGTTTCACCCTGTGCGTGCGTGT 295 consensus_4689#1 CTTGCACCTCAGCCGCTGTCTGCCTCTGTGTCTTTACCGTTTCACCCTGTGCGTGCGTGT 300 ************************************************************ consensus_4689#0 GTGCGTGTCGTGTCCTGCTGCTTTCCCAATATAACATCCCGACTGCCGCGTGAGTGGATT 355 consensus_4689#1 GTGCGTGTCGTGTCCTGCTCCTTTCCCAATATAACATCCCGACTGCCGCGTGAGTGGATT 360 ******************* **************************************** consensus_4689#0 GCTAAATGCGCTCGAATCAGACAGCACGGTTGCCGCACGCTACCTCCAGGGCCTTACAAA 415 consensus_4689#1 GCTAAATGCGCTCGAATCAGACAGCACGGTTGCCGCACGCTACCTCCAGGGCCTTACAAA 420 ************************************************************ consensus_4689#0 TACTCCGATAGGTCGTGCCTAACAAATTTGCAGTGAAGCTCCAGCAAGCGGTCTGTCCGT 475 consensus_4689#1 TACTCCGATAGGTCGTGCCTAACAAATTTACAGTGAAGCTCCAGCAAGCGGTCTGTCCGT 480 ***************************** ****************************** consensus_4689#0 AGCCGCCGAACGCACGATACACGGCAGATTGTTGCGGGTCTTTTGTTTTATCGAGCCAGT 535 consensus_4689#1 AGCCGCCGAACGCACGACACACGGCAGATTGTTGCGGGTCTTTTGTTTTATCGAGCCAGT 540 ***************** ****************************************** consensus_4689#0 AGCAACAAGCGGGAAAGCGAAGAAAAAGAGGAAGAAGTAAGAAGCATCACACGGGCTTCA 595 consensus_4689#1 GGCAACAAGCGGGAAAGCGAAGAAAAAGAGGAAGAAGTAAGAAGCATCACACGGGCTTCA 600 *********************************************************** consensus_4689#0 TCTGTCATTCCTCTTTGCCCGATCTCACCAATACAAACCACGCACACAGCCT-CACAGAC 654 consensus_4689#1 TCTGTCATTCCTCTTTGCCCGATCTCACCAATACAAACCACGCACACAGCCTTCACAGAC 660 **************************************************** ******* consensus_4689#0 CGTGACACATCGAGCGCGCGCTTACACATCGGGCCTGTTGGGTCGGGAAGAAGAAAGGAA 714 consensus_4689#1 CGTGACACATCGAGCGCGCGCTTACACATCGGGCCTGTTGG------------------- 701 ***************************************** consensus_4689#0 GAAGCAAGCAGCGGAAGCAACAGAAACGCGGCATCCTCTCTCCCTTGTTATTGTTGCTGC 774 consensus_4689#1 ------------------------------------------------------------ consensus_4689#0 CTGACGGACCCCGTTCAGCTATTCGGTGTGACGCCTTTCGCCTCCACATTCATCTACACT 834 consensus_4689#1 ------------------------------------------------------------ consensus_4689#0 CGCCCACCCTCCCTTCCCCGTTGTACGATGCCA 867 consensus_4689#1 --------------------------------- |
Copyright Wed Dec 3 12:11:56 CET 2003 Hubert Wassner (hubert.wassner@noos.fr) | ||||