cluster # 4696

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Anopheles gambiae
cluster # 4696 cluster # 4696 Sequences # 3 consensus # 2

see consensus multiple alignment with clustalw

Direct access to contigs :

consensus_4696#0 length = 662 sequences # 2

consensus_4696#1 length = 525 sequences # 1

consensusID : consensus_4696#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 2
consensus length = 662
fasta sequence

                              [TAACTAAAAACAAACGGGAAAAAAAGGTCCGACCCGTCGCTGGGCTAGTAATAGGAAGAAAGTAATGGAAAAAAATGGAAGACAAAATTTCAAATCGCCAAAACTGTTTCAAACGTGTAGCAGCAGCAGCAGCAGCAGCAGCAGCAGCTGCTGCTGCCTTGAAATGGAGATCAAGCTAAAGAGGAAAGTACACGTTGTATGTACGTCATGTAAGTAAATTGGGGCTAGCGAAGTGTTTGTAGTTAGGTTTAGCAATCGATCGTTCGCTTTTTTGTTTGTTTTCCTTTGAATAGCAGTCTTGAAAAGCATTTCGTTTTTTTGTTAGGATTCAAAATATTTCACCGTCGGTTAAGTTTTTATGTTCACCACCAGAACTGCACTGGTCCCTGGTATGTTCCATAAATAATGATACGCCTTGATTGTAAACGTGTTACCAAATGGGTGTCGTCCTCCGGTGTTGTGAAGGCACTTAACTTTTCTGTTGCCACTTTGATTTTAAGGGACAGTTTTAACATTGTTTTTGGTGGTGTAAGCGACGACATAGGAGGTGCGAACAGGGAAGACGGATAGTATATATCGCTAAGCGAAACCCAACTGCTTCTGTTCCGTCTACCAGTGGTCAATTTTGTAAGAGAAATGGAATGGCATGAAGGTGAACCGAC]

[+] EMBL BX603332             [TAACTAAAAACAAACGGGAAAAAAAGGTCCGACCCGTCGCTGGGCTAGTAATAGGAAGAAAGTAATGGAAAAAAATGGAAGACAAAATTTCAAATCGCCAAAACTGTTTCAAACGTGTAGCAGCAGCAGCAGCAGCAGCAGCAGCAGCTGCTGCTGCCTTGAAATGGAGATCAAGCTAAAGAGGAAAGTACACGTTGTATGTACGTCATGTAAGTAAATTGGGGCTAGCGAAGTGTTTGTAGTTAGGTTTAGCAATCGATCGTTCGCTTTTTTGTTTGTTTTCCTTTGAATAGCAGTCTTGAAAAGCATTTCGTTTTTTTGTTAGGATTCAAAATATTTCACCGTCGGTTAAGTTTTTATGTTCACCACCAGAACTGCACTGGTCCCTGGTATGTTCCATAAATAATGATACGCCTTGATTGTAAACGTGTTACCAAATGGGTGTCGTCCTCCGGTGTTGTGAAGGCACTTAACTTTTCTGTTGCCACTTTG                                                                                                                                                                          ]
[+] EMBL BX611190             [                                                                                   AAAATTTCAAATCGCCAAAACTGTTTCAAACGTGTAGCAGCAGCAGCAGCAGCAGCAGCAGCAGCTGCTGCTGCCTTGAAATGGAGATCAAGCTAAAGAGGAAAGTACACGTTGTATGTACGTCATGTAAGTAAATTGGGGCTAGCGAAGTGTTTGTAGTTAGGTTTAGCAATCGATCGTTCGCTTTTTTGTTTGTTTTCCTTTGAATAGCAGTCTTGAAAAGCATTTCGTTTTTTTGTTAGGATTCAAAATATTTCACCGTCGGTTAAGTTTTTATGTTCACCACCAGAACTGCACTGGTCCCTGGTATGTTCCATAAATAATGATACGCCTTGATTGTAAACGTGTTACCAAATGGGTGTCGTCCTCCGGTGTTGTGAAGGCACTTAACTTTTCTGTTGCCACTTTGATTTTAAGGGACAGTTTTAACATTGTTTTTGGTGGTGTAAGCGACGACATAGGAGGTGCGAACAGGGAAGACGGATAGTATATATCGCTAAGCGAAACCCAACTGCTTCTGTTCCGTCTACCAGTGGTCAATTTTGTAAGAGAAATGGAATGGCATGAAGGTGAACCGAC]




>consensus_4696#0
TAACTAAAAACAAACGGGAAAAAAAGGTCCGACCCGTCGCTGGGCTAGTAATAGGAAGAA
AGTAATGGAAAAAAATGGAAGACAAAATTTCAAATCGCCAAAACTGTTTCAAACGTGTAG
CAGCAGCAGCAGCAGCAGCAGCAGCAGCTGCTGCTGCCTTGAAATGGAGATCAAGCTAAA
GAGGAAAGTACACGTTGTATGTACGTCATGTAAGTAAATTGGGGCTAGCGAAGTGTTTGT
AGTTAGGTTTAGCAATCGATCGTTCGCTTTTTTGTTTGTTTTCCTTTGAATAGCAGTCTT
GAAAAGCATTTCGTTTTTTTGTTAGGATTCAAAATATTTCACCGTCGGTTAAGTTTTTAT
GTTCACCACCAGAACTGCACTGGTCCCTGGTATGTTCCATAAATAATGATACGCCTTGAT
TGTAAACGTGTTACCAAATGGGTGTCGTCCTCCGGTGTTGTGAAGGCACTTAACTTTTCT
GTTGCCACTTTGATTTTAAGGGACAGTTTTAACATTGTTTTTGGTGGTGTAAGCGACGAC
ATAGGAGGTGCGAACAGGGAAGACGGATAGTATATATCGCTAAGCGAAACCCAACTGCTT
CTGTTCCGTCTACCAGTGGTCAATTTTGTAAGAGAAATGGAATGGCATGAAGGTGAACCG
AC

consensusID : consensus_4696#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 525
fasta sequence

                              [GGCAGAATCGGCACGATGGTGTTGTAGTTAGGTTTAGCAACTCGATCGTTCGCTTTTTTGTTTGTTTTCCTTTGAATAGCAGTCTTGAAAAGCATTTCGTTTTTTTGTTAGGATTCAAAATATTTCACCGTCGGTTAAGTTTTTATGTTCACCACCAGAACTGCACTGGTCCCTGGTATGTTCCATAAATAATGATACGCCTTGATTGTAAACGTGTTACCAAATGGGTGTCGTCCTCCGGTGTTGTGAAGGCACTTAACTTTTCTGTTGCCACTTTGATTTTAAGGGACAGTTTTAAGCATTGTTTCTTCGGTGGTGTAAGCGACGACATAGGAGGTGCGAACAGGGAAGACGGATAGTATATATCGCTAAGCGAAACCCAACTGCTTCTGTTCCGTCTACCAGTGGTCAATNCTGTAAGAGAACATGGAATGGCATGAAGGTGAACCGACGATCGCACAATACCGATAGAGAGGGCGGCAGGAAAATGCATATACGGTGTGATCACATCGTTAATATAGAGTG]

[+] EMBL BX469853             [GGCAGAATCGGCACGATGGTGTTGTAGTTAGGTTTAGCAACTCGATCGTTCGCTTTTTTGTTTGTTTTCCTTTGAATAGCAGTCTTGAAAAGCATTTCGTTTTTTTGTTAGGATTCAAAATATTTCACCGTCGGTTAAGTTTTTATGTTCACCACCAGAACTGCACTGGTCCCTGGTATGTTCCATAAATAATGATACGCCTTGATTGTAAACGTGTTACCAAATGGGTGTCGTCCTCCGGTGTTGTGAAGGCACTTAACTTTTCTGTTGCCACTTTGATTTTAAGGGACAGTTTTAAGCATTGTTTCTTCGGTGGTGTAAGCGACGACATAGGAGGTGCGAACAGGGAAGACGGATAGTATATATCGCTAAGCGAAACCCAACTGCTTCTGTTCCGTCTACCAGTGGTCAATNCTGTAAGAGAACATGGAATGGCATGAAGGTGAACCGACGATCGCACAATACCGATAGAGAGGGCGGCAGGAAAATGCATATACGGTGTGATCACATCGTTAATATAGAGTG]




>consensus_4696#1
GGCAGAATCGGCACGATGGTGTTGTAGTTAGGTTTAGCAACTCGATCGTTCGCTTTTTTG
TTTGTTTTCCTTTGAATAGCAGTCTTGAAAAGCATTTCGTTTTTTTGTTAGGATTCAAAA
TATTTCACCGTCGGTTAAGTTTTTATGTTCACCACCAGAACTGCACTGGTCCCTGGTATG
TTCCATAAATAATGATACGCCTTGATTGTAAACGTGTTACCAAATGGGTGTCGTCCTCCG
GTGTTGTGAAGGCACTTAACTTTTCTGTTGCCACTTTGATTTTAAGGGACAGTTTTAAGC
ATTGTTTCTTCGGTGGTGTAAGCGACGACATAGGAGGTGCGAACAGGGAAGACGGATAGT
ATATATCGCTAAGCGAAACCCAACTGCTTCTGTTCCGTCTACCAGTGGTCAATNCTGTAA
GAGAACATGGAATGGCATGAAGGTGAACCGACGATCGCACAATACCGATAGAGAGGGCGG
CAGGAAAATGCATATACGGTGTGATCACATCGTTAATATAGAGTG

consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_4696#0      TAACTAAAAACAAACGGGAAAAAAAGGTCCGACCCGTCGCTGGGCTAGTAATAGGAAGAA 60
consensus_4696#1      ------------------------------------------------------------
                                                                                  

consensus_4696#0      AGTAATGGAAAAAAATGGAAGACAAAATTTCAAATCGCCAAAACTGTTTCAAACGTGTAG 120
consensus_4696#1      ------------------------------------------------------------
                                                                                  

consensus_4696#0      CAGCAGCAGCAGCAGCAGCAGCAGCAGCTGCTGCTGCCTTGAAATGGAGATCAAGCTAAA 180
consensus_4696#1      ------------------------------------------------------------
                                                                                  

consensus_4696#0      GAGGAAAGTACACGTTGTATGTACGTCATGTAAGTAAATTGGGGCTAGCGAAGTGTTTGT 240
consensus_4696#1      --------------------------------GGCAGAATCGGC---ACGATGGTGTTGT 25
                                                       * * * * **     *** *   ****

consensus_4696#0      AGTTAGGTTTAGCAA-TCGATCGTTCGCTTTTTTGTTTGTTTTCCTTTGAATAGCAGTCT 299
consensus_4696#1      AGTTAGGTTTAGCAACTCGATCGTTCGCTTTTTTGTTTGTTTTCCTTTGAATAGCAGTCT 85
                      *************** ********************************************

consensus_4696#0      TGAAAAGCATTTCGTTTTTTTGTTAGGATTCAAAATATTTCACCGTCGGTTAAGTTTTTA 359
consensus_4696#1      TGAAAAGCATTTCGTTTTTTTGTTAGGATTCAAAATATTTCACCGTCGGTTAAGTTTTTA 145
                      ************************************************************

consensus_4696#0      TGTTCACCACCAGAACTGCACTGGTCCCTGGTATGTTCCATAAATAATGATACGCCTTGA 419
consensus_4696#1      TGTTCACCACCAGAACTGCACTGGTCCCTGGTATGTTCCATAAATAATGATACGCCTTGA 205
                      ************************************************************

consensus_4696#0      TTGTAAACGTGTTACCAAATGGGTGTCGTCCTCCGGTGTTGTGAAGGCACTTAACTTTTC 479
consensus_4696#1      TTGTAAACGTGTTACCAAATGGGTGTCGTCCTCCGGTGTTGTGAAGGCACTTAACTTTTC 265
                      ************************************************************

consensus_4696#0      TGTTGCCACTTTGATTTTAAGGGACAGTTTTAA-CATTGTTTTT--GGTGGTGTAAGCGA 536
consensus_4696#1      TGTTGCCACTTTGATTTTAAGGGACAGTTTTAAGCATTGTTTCTTCGGTGGTGTAAGCGA 325
                      ********************************* ******** *  **************

consensus_4696#0      CGACATAGGAGGTGCGAACAGGGAAGACGGATAGTATATATCGCTAAGCGAAACCCAACT 596
consensus_4696#1      CGACATAGGAGGTGCGAACAGGGAAGACGGATAGTATATATCGCTAAGCGAAACCCAACT 385
                      ************************************************************

consensus_4696#0      GCTTCTGTTCCGTCTACCAGTGGTCAATTTTGTAAGAGAA-ATGGAATGGCATGAAGGTG 655
consensus_4696#1      GCTTCTGTTCCGTCTACCAGTGGTCAATNCTGTAAGAGAACATGGAATGGCATGAAGGTG 445
                      ****************************  ********** *******************

consensus_4696#0      AACCGAC----------------------------------------------------- 662
consensus_4696#1      AACCGACGATCGCACAATACCGATAGAGAGGGCGGCAGGAAAATGCATATACGGTGTGAT 505
                      *******                                                     

consensus_4696#0      --------------------
consensus_4696#1      CACATCGTTAATATAGAGTG 525