cluster # 4700

These datas are free for academic use only, please contact me for any other use.

Anopheles gambiae
cluster # 4700 cluster # 4700 Sequences # 3 consensus # 3

see consensus multiple alignment with clustalw

Direct access to contigs :

consensus_4700#0 length = 444 sequences # 1

consensus_4700#1 length = 345 sequences # 1
consensus_4700#2 length = 273 sequences # 1

consensusID : consensus_4700#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 444
fasta sequence

                              [CGAGGATGTGTCATAGGTACGTTCGGGTTCGCACAGTACATGGGCCCAATGATGGGTTTGATGAACGCCTGGTCACACGTTCCGCACGAGTTTCTACCCTTCACCGACCACATGTCTCTCTATGAACGGGCTTATAACTCCTTCGTCAGTTCGTACGAGCTACTGCTTCGCTCCTGGTACTATCTTCCCGAGCAGCAAGCAATGGCGGACAAGCATTTCTCATTTCTGCCCGGTCCCCTACCCCGGCTGAGCGATCTTGAACGTCAAGTGTCGGTCATTCTGCTCAACAGCTATCCACCCCTTACGTCGACCCGTGCCAAAGTGCCCGGCTTGGTGCAGGTCGGTGGTTTACACATCAAACCGCCCAAACGTCTTCCGGACGATCTGCAAACGTTCATCGACGGTGCAACGGATGGGGTGATCTATTTCAGTCTCGGCACAAAC]

[+] EMBL AL931836             [CGAGGATGTGTCATAGGTACGTTCGGGTTCGCACAGTACATGGGCCCAATGATGGGTTTGATGAACGCCTGGTCACACGTTCCGCACGAGTTTCTACCCTTCACCGACCACATGTCTCTCTATGAACGGGCTTATAACTCCTTCGTCAGTTCGTACGAGCTACTGCTTCGCTCCTGGTACTATCTTCCCGAGCAGCAAGCAATGGCGGACAAGCATTTCTCATTTCTGCCCGGTCCCCTACCCCGGCTGAGCGATCTTGAACGTCAAGTGTCGGTCATTCTGCTCAACAGCTATCCACCCCTTACGTCGACCCGTGCCAAAGTGCCCGGCTTGGTGCAGGTCGGTGGTTTACACATCAAACCGCCCAAACGTCTTCCGGACGATCTGCAAACGTTCATCGACGGTGCAACGGATGGGGTGATCTATTTCAGTCTCGGCACAAAC]




>consensus_4700#0
CGAGGATGTGTCATAGGTACGTTCGGGTTCGCACAGTACATGGGCCCAATGATGGGTTTG
ATGAACGCCTGGTCACACGTTCCGCACGAGTTTCTACCCTTCACCGACCACATGTCTCTC
TATGAACGGGCTTATAACTCCTTCGTCAGTTCGTACGAGCTACTGCTTCGCTCCTGGTAC
TATCTTCCCGAGCAGCAAGCAATGGCGGACAAGCATTTCTCATTTCTGCCCGGTCCCCTA
CCCCGGCTGAGCGATCTTGAACGTCAAGTGTCGGTCATTCTGCTCAACAGCTATCCACCC
CTTACGTCGACCCGTGCCAAAGTGCCCGGCTTGGTGCAGGTCGGTGGTTTACACATCAAA
CCGCCCAAACGTCTTCCGGACGATCTGCAAACGTTCATCGACGGTGCAACGGATGGGGTG
ATCTATTTCAGTCTCGGCACAAAC

consensusID : consensus_4700#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 345
fasta sequence

                              [GAATCGNCACGAGGTGTATCTCTATGAACGGGCTTATAACTCCTTCGTCAGTTCGTACGAGCTACTGCTTCGCTCCTGGTACTATCTTCCCGAGCAGCAAGCAATGGCGGACAAGCATTTCTCATTTCTGCCCGGTCCCCTACCCCGGCTGAGCGATCTTGAACGTCAAGTGTCGGTCATTCTGCTCAACAGCTATCCACCCCTTACGTCGACCCGTGCCAAAGTGCCCGGCTTGGTGCAGGTCAGGTGGTTTACACATCAAACCGCCAAACAGTCTTCCGGACGAGTCTGNAAACGTTCATCGAACAGGTGCAACGGATGAGGGTGATCTAATTTCAGTCTCGA]

[+] EMBL BX469449             [GAATCGNCACGAGGTGTATCTCTATGAACGGGCTTATAACTCCTTCGTCAGTTCGTACGAGCTACTGCTTCGCTCCTGGTACTATCTTCCCGAGCAGCAAGCAATGGCGGACAAGCATTTCTCATTTCTGCCCGGTCCCCTACCCCGGCTGAGCGATCTTGAACGTCAAGTGTCGGTCATTCTGCTCAACAGCTATCCACCCCTTACGTCGACCCGTGCCAAAGTGCCCGGCTTGGTGCAGGTCAGGTGGTTTACACATCAAACCGCCAAACAGTCTTCCGGACGAGTCTGNAAACGTTCATCGAACAGGTGCAACGGATGAGGGTGATCTAATTTCAGTCTCGA]




>consensus_4700#1
GAATCGNCACGAGGTGTATCTCTATGAACGGGCTTATAACTCCTTCGTCAGTTCGTACGA
GCTACTGCTTCGCTCCTGGTACTATCTTCCCGAGCAGCAAGCAATGGCGGACAAGCATTT
CTCATTTCTGCCCGGTCCCCTACCCCGGCTGAGCGATCTTGAACGTCAAGTGTCGGTCAT
TCTGCTCAACAGCTATCCACCCCTTACGTCGACCCGTGCCAAAGTGCCCGGCTTGGTGCA
GGTCAGGTGGTTTACACATCAAACCGCCAAACAGTCTTCCGGACGAGTCTGNAAACGTTC
ATCGAACAGGTGCAACGGATGAGGGTGATCTAATTTCAGTCTCGA

consensusID : consensus_4700#2
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 273
fasta sequence

                              [TACGTACGGGTACGCACAGTACATGGGCCCAATGATGGGTAAGATGAACGCCTGGTCACACGTCCCGCACGAGTAGCAACCCTACACCGACCACATGTCGCTCTAAGAACGGGCTGACAACTCCCTCGTCAGTACGTACGAGCTACGGCTCCGCTCCTGGTACTAACCACCCGAGCAGCAAGCGATGGCGGACAAGCATAACACACAACCGCCCGGTCCACTGCCCCGGCTGAGCGATCCCGAACGTCAAGGGTCGGTCAGACCGCTCAACAG]

[+] EMBL BX612467             [TACGTACGGGTACGCACAGTACATGGGCCCAATGATGGGTAAGATGAACGCCTGGTCACACGTCCCGCACGAGTAGCAACCCTACACCGACCACATGTCGCTCTAAGAACGGGCTGACAACTCCCTCGTCAGTACGTACGAGCTACGGCTCCGCTCCTGGTACTAACCACCCGAGCAGCAAGCGATGGCGGACAAGCATAACACACAACCGCCCGGTCCACTGCCCCGGCTGAGCGATCCCGAACGTCAAGGGTCGGTCAGACCGCTCAACAG]




>consensus_4700#2
TACGTACGGGTACGCACAGTACATGGGCCCAATGATGGGTAAGATGAACGCCTGGTCACA
CGTCCCGCACGAGTAGCAACCCTACACCGACCACATGTCGCTCTAAGAACGGGCTGACAA
CTCCCTCGTCAGTACGTACGAGCTACGGCTCCGCTCCTGGTACTAACCACCCGAGCAGCA
AGCGATGGCGGACAAGCATAACACACAACCGCCCGGTCCACTGCCCCGGCTGAGCGATCC
CGAACGTCAAGGGTCGGTCAGACCGCTCAACAG

consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_4700#0      CGAGGATGTGTCATAGGTACGTTCGGGTTCGCACAGTACATGGGCCCAATGATGGGTTTG 60
consensus_4700#1      ------------------------------------------------------------
consensus_4700#2      -----------------TACGTACGGGTACGCACAGTACATGGGCCCAATGATGGGTAAG 43
                                                                                  

consensus_4700#0      ATGAACGCCTGGTCACACGTTCCGCACGAGTTTCTACCCTTCACCGACCACATGTCTCTC 120
consensus_4700#1      -------------------------------------GAATCGNC-ACGAGGTGTATCTC 22
consensus_4700#2      ATGAACGCCTGGTCACACGTCCCGCACGAGTAGCAACCCTACACCGACCACATGTCGCTC 103
                                                               *  * ** *  ***  ***

consensus_4700#0      TATGAACGGGCTTATAACTCCTTCGTCAGTTCGTACGAGCTACTGCTTCGCTCCTGGTAC 180
consensus_4700#1      TATGAACGGGCTTATAACTCCTTCGTCAGTTCGTACGAGCTACTGCTTCGCTCCTGGTAC 82
consensus_4700#2      TAAGAACGGGCTGACAACTCCCTCGTCAGTACGTACGAGCTACGGCTCCGCTCCTGGTAC 163
                      ** ********* * ****** ******** ************ *** ************

consensus_4700#0      TATCTTCCCGAGCAGCAAGCAATGGCGGACAAGCATTTCTCATTTCTGCCCGGTCCCCTA 240
consensus_4700#1      TATCTTCCCGAGCAGCAAGCAATGGCGGACAAGCATTTCTCATTTCTGCCCGGTCCCCTA 142
consensus_4700#2      TAACCACCCGAGCAGCAAGCGATGGCGGACAAGCATAACACACAACCGCCCGGTCCACTG 223
                      ** *  ************** ***************  * **   * ********* ** 

consensus_4700#0      CCCCGGCTGAGCGATCTTGAACGTCAAGTGTCGGTCATTCTGCTCAACAGCTATCCACCC 300
consensus_4700#1      CCCCGGCTGAGCGATCTTGAACGTCAAGTGTCGGTCATTCTGCTCAACAGCTATCCACCC 202
consensus_4700#2      CCCCGGCTGAGCGATCCCGAACGTCAAGGGTCGGTCAGACCGCTCAACAG---------- 273
                      ****************  ********** ********  * *********          

consensus_4700#0      CTTACGTCGACCCGTGCCAAAGTGCCCGGCTTGGTGCAGGTC-GGTGGTTTACACATCAA 359
consensus_4700#1      CTTACGTCGACCCGTGCCAAAGTGCCCGGCTTGGTGCAGGTCAGGTGGTTTACACATCAA 262
consensus_4700#2      ------------------------------------------------------------
                                                                                  

consensus_4700#0      ACCGCCCAAACGTCTTCCGGACGA-TCTGCAAACGTTCATCGAC--GGTGCAACGGATG- 415
consensus_4700#1      ACCGCCAAACAGTCTTCCGGACGAGTCTGNAAACGTTCATCGAACAGGTGCAACGGATGA 322
consensus_4700#2      ------------------------------------------------------------
                                                                                  

consensus_4700#0      GGGTGATCTA-TTTCAGTCTCGGCACAAAC 444
consensus_4700#1      GGGTGATCTAATTTCAGTCTCGA------- 345
consensus_4700#2      ------------------------------