cluster # 4704

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Anopheles gambiae
cluster # 4704 cluster # 4704 Sequences # 3 consensus # 3

see consensus multiple alignment with clustalw

Direct access to contigs :

consensus_4704#0 length = 640 sequences # 1

consensus_4704#1 length = 597 sequences # 1
consensus_4704#2 length = 273 sequences # 1

consensusID : consensus_4704#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 640
fasta sequence

                              [GGCAGAATCCCNACGAGGTCAACGCGCGCGGTTGTGTGTCAACTCTCATCTCCGTCGTCGTACTAGTGCGTCGCGTTGAATGTGTAGAGGAGAAGATATTGTGTTTAACAGTGTGTTTTTATTCTTTAAACTGTGTTTAGTGTTTCAAGTTAGACTTCAATTAGGTTAGGTTAGGCGCTCCTTCAATTGTTGGTGTGTGTGTATATTTGTNTGCTGTGCTGTACACGCAGCTGTAGTTCAATTTCGTAAATAGCGAAGTGAAAACAAAGCAACACCCTCGGTGTGTGTATGTGTTGGTGGAAAGTGTTTTGCGCACATGTGTGATGCGTGGAGCTGCTCCACTGGGCTTACCAAAGGCCTGATGTGTATGTGTGTGTGAATATATTTGACGTTCGACCGCTGGGCAGCACGTTTCTAGGAGGTTGTGTGTCGTAACAGGTGTTTCCAGGCGCGGCGTNAGAGCATGGTTTAAGGGTGTCGTCGTTCCTCGGTTGAAGAAACCCTTTCAANATCGCGCAAGAAGCGAGGCGAGTCCCAGCAAGGTCAAGNANGCAGCACAGAGTCGCGCGAGCCAGGTGCAAGCNACGGTACAGTCGGATGTAGACCGGGAAAGAACGCCAACAGTGGTGGCCAATTCTGG]

[+] EMBL BX468980             [GGCAGAATCCCNACGAGGTCAACGCGCGCGGTTGTGTGTCAACTCTCATCTCCGTCGTCGTACTAGTGCGTCGCGTTGAATGTGTAGAGGAGAAGATATTGTGTTTAACAGTGTGTTTTTATTCTTTAAACTGTGTTTAGTGTTTCAAGTTAGACTTCAATTAGGTTAGGTTAGGCGCTCCTTCAATTGTTGGTGTGTGTGTATATTTGTNTGCTGTGCTGTACACGCAGCTGTAGTTCAATTTCGTAAATAGCGAAGTGAAAACAAAGCAACACCCTCGGTGTGTGTATGTGTTGGTGGAAAGTGTTTTGCGCACATGTGTGATGCGTGGAGCTGCTCCACTGGGCTTACCAAAGGCCTGATGTGTATGTGTGTGTGAATATATTTGACGTTCGACCGCTGGGCAGCACGTTTCTAGGAGGTTGTGTGTCGTAACAGGTGTTTCCAGGCGCGGCGTNAGAGCATGGTTTAAGGGTGTCGTCGTTCCTCGGTTGAAGAAACCCTTTCAANATCGCGCAAGAAGCGAGGCGAGTCCCAGCAAGGTCAAGNANGCAGCACAGAGTCGCGCGAGCCAGGTGCAAGCNACGGTACAGTCGGATGTAGACCGGGAAAGAACGCCAACAGTGGTGGCCAATTCTGG]




>consensus_4704#0
GGCAGAATCCCNACGAGGTCAACGCGCGCGGTTGTGTGTCAACTCTCATCTCCGTCGTCG
TACTAGTGCGTCGCGTTGAATGTGTAGAGGAGAAGATATTGTGTTTAACAGTGTGTTTTT
ATTCTTTAAACTGTGTTTAGTGTTTCAAGTTAGACTTCAATTAGGTTAGGTTAGGCGCTC
CTTCAATTGTTGGTGTGTGTGTATATTTGTNTGCTGTGCTGTACACGCAGCTGTAGTTCA
ATTTCGTAAATAGCGAAGTGAAAACAAAGCAACACCCTCGGTGTGTGTATGTGTTGGTGG
AAAGTGTTTTGCGCACATGTGTGATGCGTGGAGCTGCTCCACTGGGCTTACCAAAGGCCT
GATGTGTATGTGTGTGTGAATATATTTGACGTTCGACCGCTGGGCAGCACGTTTCTAGGA
GGTTGTGTGTCGTAACAGGTGTTTCCAGGCGCGGCGTNAGAGCATGGTTTAAGGGTGTCG
TCGTTCCTCGGTTGAAGAAACCCTTTCAANATCGCGCAAGAAGCGAGGCGAGTCCCAGCA
AGGTCAAGNANGCAGCACAGAGTCGCGCGAGCCAGGTGCAAGCNACGGTACAGTCGGATG
TAGACCGGGAAAGAACGCCAACAGTGGTGGCCAATTCTGG

consensusID : consensus_4704#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 597
fasta sequence

                              [CCGCTAACACTCGACGCGCGCGGTTGTGTGTCAATCTCATCTCCGTCGTCGTACTAGTGCGTCGCGTTGAATGTGTAGAGGAGAAGATATTGTGTTTAAAGTGTGTTTTATTCCTAAAACTGTGTTTAGTGTTTCAAGTTAGGCTGGTTAGGCGCTCCTTCAATTGTTGGTGTGTGTATATTTGTTGCTGTGCTGTACACGCAACTGTAGTTCAATTTCGTAAATAGTGAAGTGAAAAAAAAGCAACACCCTCGTGTGTGTATGTGTTGGTGGAAAGTGTTTTGCGCACATGTGTGATGCGTGGAGCGGCTCCACTGGCTTACCAAAGGCCTGATGTGTATGTGTGTGTGAATATATTTGACGTTCGACCGCTGGGCAGCACGTTTTAGGAGTTGTTTTTACAGTGTTTCCTGGCGCGGCGTTGGAGCATGGTTTAAGGGTGTCGTCTTCCTCGGTTGAAGAAACCCTTTCAACATCCCAACAACAGCAGTCCCAGCAGGTCAAAGGCAGCACACCGTTGCGCGAGCCAGGTGCAGCAGTAATTGATGTAACGGGAAGAACGCAAAGTGTGCCAATTCTGGAGTGTGGCTGCTGCTC]

[+] EMBL BM576308             [CCGCTAACACTCGACGCGCGCGGTTGTGTGTCAATCTCATCTCCGTCGTCGTACTAGTGCGTCGCGTTGAATGTGTAGAGGAGAAGATATTGTGTTTAAAGTGTGTTTTATTCCTAAAACTGTGTTTAGTGTTTCAAGTTAGGCTGGTTAGGCGCTCCTTCAATTGTTGGTGTGTGTATATTTGTTGCTGTGCTGTACACGCAACTGTAGTTCAATTTCGTAAATAGTGAAGTGAAAAAAAAGCAACACCCTCGTGTGTGTATGTGTTGGTGGAAAGTGTTTTGCGCACATGTGTGATGCGTGGAGCGGCTCCACTGGCTTACCAAAGGCCTGATGTGTATGTGTGTGTGAATATATTTGACGTTCGACCGCTGGGCAGCACGTTTTAGGAGTTGTTTTTACAGTGTTTCCTGGCGCGGCGTTGGAGCATGGTTTAAGGGTGTCGTCTTCCTCGGTTGAAGAAACCCTTTCAACATCCCAACAACAGCAGTCCCAGCAGGTCAAAGGCAGCACACCGTTGCGCGAGCCAGGTGCAGCAGTAATTGATGTAACGGGAAGAACGCAAAGTGTGCCAATTCTGGAGTGTGGCTGCTGCTC]




>consensus_4704#1
CCGCTAACACTCGACGCGCGCGGTTGTGTGTCAATCTCATCTCCGTCGTCGTACTAGTGC
GTCGCGTTGAATGTGTAGAGGAGAAGATATTGTGTTTAAAGTGTGTTTTATTCCTAAAAC
TGTGTTTAGTGTTTCAAGTTAGGCTGGTTAGGCGCTCCTTCAATTGTTGGTGTGTGTATA
TTTGTTGCTGTGCTGTACACGCAACTGTAGTTCAATTTCGTAAATAGTGAAGTGAAAAAA
AAGCAACACCCTCGTGTGTGTATGTGTTGGTGGAAAGTGTTTTGCGCACATGTGTGATGC
GTGGAGCGGCTCCACTGGCTTACCAAAGGCCTGATGTGTATGTGTGTGTGAATATATTTG
ACGTTCGACCGCTGGGCAGCACGTTTTAGGAGTTGTTTTTACAGTGTTTCCTGGCGCGGC
GTTGGAGCATGGTTTAAGGGTGTCGTCTTCCTCGGTTGAAGAAACCCTTTCAACATCCCA
ACAACAGCAGTCCCAGCAGGTCAAAGGCAGCACACCGTTGCGCGAGCCAGGTGCAGCAGT
AATTGATGTAACGGGAAGAACGCAAAGTGTGCCAATTCTGGAGTGTGGCTGCTGCTC

consensusID : consensus_4704#2
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 273
fasta sequence

                              [ATATTGTGTTTAAACAAGGTGNTGTCTCTCTATTCTTTAAACTGCTGCTTTAGTGTTTCAAGTTAGACTTCAATTAGGTTAGGTTAGGCGCTCCTTCAACTTGTTGGTGTGTGTGTATATTTGTTGCTGGGCCCTTTTGGGGCGCCCCCTTGGTAACACGGCAGCTGCTAGGTATCAACTATCTCGTAAATACGCTGAANGTGAAGAANAAAGCAACACCCTTCCNGGCACNCTTGGCTGGTGGTAATGTAGTACGGTGGAAAGTGTATCCAG]

[+] EMBL AL933298             [ATATTGTGTTTAAACAAGGTGNTGTCTCTCTATTCTTTAAACTGCTGCTTTAGTGTTTCAAGTTAGACTTCAATTAGGTTAGGTTAGGCGCTCCTTCAACTTGTTGGTGTGTGTGTATATTTGTTGCTGGGCCCTTTTGGGGCGCCCCCTTGGTAACACGGCAGCTGCTAGGTATCAACTATCTCGTAAATACGCTGAANGTGAAGAANAAAGCAACACCCTTCCNGGCACNCTTGGCTGGTGGTAATGTAGTACGGTGGAAAGTGTATCCAG]




>consensus_4704#2
ATATTGTGTTTAAACAAGGTGNTGTCTCTCTATTCTTTAAACTGCTGCTTTAGTGTTTCA
AGTTAGACTTCAATTAGGTTAGGTTAGGCGCTCCTTCAACTTGTTGGTGTGTGTGTATAT
TTGTTGCTGGGCCCTTTTGGGGCGCCCCCTTGGTAACACGGCAGCTGCTAGGTATCAACT
ATCTCGTAAATACGCTGAANGTGAAGAANAAAGCAACACCCTTCCNGGCACNCTTGGCTG
GTGGTAATGTAGTACGGTGGAAAGTGTATCCAG

consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_4704#0      GGCAGAATCCCNACGAGGTCAACGCGCGCGGTTGTGTGTCAACTCTCATCTCCGTCGTCG 60
consensus_4704#1      --------CCGCTAACACTCGACGCGCGCGGTTGTGTGTCAA-TCTCATCTCCGTCGTCG 51
consensus_4704#2      ------------------------------------------------------------
                                                                                  

consensus_4704#0      TACTAGTGCGTCGCGTTGAATGTGTAGAGGAGAAGATATTGTGTTTAAC------AGTGT 114
consensus_4704#1      TACTAGTGCGTCGCGTTGAATGTGTAGAGGAGAAGATATTGTGTTTAA-------AGTGT 104
consensus_4704#2      -----------------------------------ATATTGTGTTTAAACAAGGTGNTGT 25
                                                         *************         ***

consensus_4704#0      GTTTTTATTCTTTAAACTGTG--TTTAGTGTTTCAAGTTAGACTTCAATTAGGTTAGGTT 172
consensus_4704#1      GTTTT-ATTCCTAAAACTGTG--TTTAGTGTTTCAAGTTAGGCT------------GGTT 149
consensus_4704#2      CTCTCTATTCTTTAAACTGCTGCTTTAGTGTTTCAAGTTAGACTTCAATTAGGTTAGGTT 85
                       * *  **** * ******    ****************** **            ****

consensus_4704#0      AGGCGCTCCTTCAA-TTGTTGGTGTGTGTGTATATTTGTNTGCTGTGCTGTACACGCAGC 231
consensus_4704#1      AGGCGCTCCTTCAA-TTGTTGGTGTGTGT--ATATTTGTT-GCTGTGCTGTACACGCAAC 205
consensus_4704#2      AGGCGCTCCTTCAACTTGTTGGTGTGTGTGTATATTTGTT-GCTGGGCCCTT-------T 137
                      ************** **************  ********  **** **  *         

consensus_4704#0      TGTAGTTCAATTTCGTAAATAGCGAAGTGAAAACAAAGCAACACCCTCGGTGTGTGTATG 291
consensus_4704#1      TGTAGTTCAATTTCGTAAATAGTGAAGTGAAAAAAAAGCAACACCCTCG-TGTGTGTATG 264
consensus_4704#2      TGGGGCGCCCCCTTGGTAACACGGCAGCTGCTAGGTATCAACTATCTCG-----TAAATA 192
                      **  *  *    * *  ** *  * **     *   * ****   ****     *  ** 

consensus_4704#0      TGTTGGTGGAAAGTGTTTTGCGCACATGTGTGATGCGTGGAGCTGCTCCACTGGGCTTAC 351
consensus_4704#1      TGTTGGTGGAAAGTGTTTTGCGCACATGTGTGATGCGTGGAGCGGCTCCACTGG-CTTAC 323
consensus_4704#2      CGCTG----AANGTGAAGAANAAAGCAACACCCTTCCNGGCACN-CTTGGCTGGTGGTAA 247
                       * **    ** ***        *         * *  **  *  **   ****   ** 

consensus_4704#0      CAAAGGCCTGATGTGTATGTGTGTGTGAATATATTTGACGTTCGACCGCTGGGCAGCACG 411
consensus_4704#1      CAAAGGCCTGATGTGTATGTGTGTGTGAATATATTTGACGTTCGACCGCTGGGCAGCACG 383
consensus_4704#2      TGTAG-TACGGTG-GAAAGTGTATCCAG-------------------------------- 273
                         **    * ** * * **** *                                    

consensus_4704#0      TTTCTAGGAGGTTGTGTGTCGTAACAGGTGTTTCCAGGCGCGGCGTNAGAGCATGGTTTA 471
consensus_4704#1      TTT-TAGGAGTT-----GTTTTTACAG-TGTTTCCTGGCGCGGCGTTGGAGCATGGTTTA 436
consensus_4704#2      ------------------------------------------------------------
                                                                                  

consensus_4704#0      AGGGTGTCGTCGTTCCTCGGTTGAAGAAACCCTTTCAANATCGCGCAAGAAGCGAGGCGA 531
consensus_4704#1      AGGGTGTCGTC-TTCCTCGGTTGAAGAAACCCTTTCAACATCCCAACAACAGC------A 489
consensus_4704#2      ------------------------------------------------------------
                                                                                  

consensus_4704#0      GTCCCAGCAAGGTCAAGNANGCAGCACAGAGTCGCGCGAGCCAGGTGCAAGCNACGGTAC 591
consensus_4704#1      GTCCCAGCA-GGTCAA--AGGCAGCACACCGTTGCGCGAGCCAGGTGCA-GCAGTAATTG 545
consensus_4704#2      ------------------------------------------------------------
                                                                                  

consensus_4704#0      AGTCGGATGTAGACCGGGAAAGAACGCCAACAGTGGTGGCCAATTCTGG--- 640
consensus_4704#1      ATGTAACGGGAAGAACGCAAAGTGTGCCAATTCTGGAGTGTGGCTGCTGCTC 597
consensus_4704#2      ----------------------------------------------------