cluster # 4708

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Anopheles gambiae
cluster # 4708 cluster # 4708 Sequences # 3 consensus # 3

see consensus multiple alignment with clustalw

Direct access to contigs :

consensus_4708#0 length = 649 sequences # 1

consensus_4708#1 length = 641 sequences # 1
consensus_4708#2 length = 333 sequences # 1

consensusID : consensus_4708#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 649
fasta sequence

                              [CCGCCCACGCGTCCGGCGTAACACCAAAGTCAAAGAACTTAAACCAACTCGATGATACATCCCTTTCCCATCCGCACCGCGGCATAACGCCATCCTCCGAAGTGAGGTGTCCTGTACGAGCGGACTTTAAGCATCTGTTCTTCTTTCATCCCATTATAAATGGCGTCGCTTACGATATATCAGTAGAGTATTCCGATACTGTAGTTTTCTGGTCTGGATTAATGGGAACAAAGATTTAGTTACTTTGTCATCCACTTTCTTCACTCTCCCTCAAGTGCTGCTCACAATCTATGTGTTCTCCCTTTTGCGCAAATGTACATCTCGCTGTGAAGCAAAGAAACCCCATTGACCTCATTTTGGTTCCGATTCTTCGATGGTCCCCTAAAACAATTTCCCATTTTTGTGACATTGCGTCATAAGTGGCAGCATTGTACAATGTCTTTTTGTTTTTGCTACTTCTTCTTCCAGTATATGGGATATGGCTCTTACGAAATAAGATTGTAATGTAAAATATTCGCACTCGCGGTTAGTCAAGAAAGTATTAAAGGGGCATATTTACTTACATAGTATAGATAAATAAAAAAAAAAAAAAACACTCGGGGGCTGTAATGCAGAACTCGGGCCTCGGGGGTCACTCGTCTCGGTAGAG]

[+] EMBL BM647842             [CCGCCCACGCGTCCGGCGTAACACCAAAGTCAAAGAACTTAAACCAACTCGATGATACATCCCTTTCCCATCCGCACCGCGGCATAACGCCATCCTCCGAAGTGAGGTGTCCTGTACGAGCGGACTTTAAGCATCTGTTCTTCTTTCATCCCATTATAAATGGCGTCGCTTACGATATATCAGTAGAGTATTCCGATACTGTAGTTTTCTGGTCTGGATTAATGGGAACAAAGATTTAGTTACTTTGTCATCCACTTTCTTCACTCTCCCTCAAGTGCTGCTCACAATCTATGTGTTCTCCCTTTTGCGCAAATGTACATCTCGCTGTGAAGCAAAGAAACCCCATTGACCTCATTTTGGTTCCGATTCTTCGATGGTCCCCTAAAACAATTTCCCATTTTTGTGACATTGCGTCATAAGTGGCAGCATTGTACAATGTCTTTTTGTTTTTGCTACTTCTTCTTCCAGTATATGGGATATGGCTCTTACGAAATAAGATTGTAATGTAAAATATTCGCACTCGCGGTTAGTCAAGAAAGTATTAAAGGGGCATATTTACTTACATAGTATAGATAAATAAAAAAAAAAAAAAACACTCGGGGGCTGTAATGCAGAACTCGGGCCTCGGGGGTCACTCGTCTCGGTAGAG]




>consensus_4708#0
CCGCCCACGCGTCCGGCGTAACACCAAAGTCAAAGAACTTAAACCAACTCGATGATACAT
CCCTTTCCCATCCGCACCGCGGCATAACGCCATCCTCCGAAGTGAGGTGTCCTGTACGAG
CGGACTTTAAGCATCTGTTCTTCTTTCATCCCATTATAAATGGCGTCGCTTACGATATAT
CAGTAGAGTATTCCGATACTGTAGTTTTCTGGTCTGGATTAATGGGAACAAAGATTTAGT
TACTTTGTCATCCACTTTCTTCACTCTCCCTCAAGTGCTGCTCACAATCTATGTGTTCTC
CCTTTTGCGCAAATGTACATCTCGCTGTGAAGCAAAGAAACCCCATTGACCTCATTTTGG
TTCCGATTCTTCGATGGTCCCCTAAAACAATTTCCCATTTTTGTGACATTGCGTCATAAG
TGGCAGCATTGTACAATGTCTTTTTGTTTTTGCTACTTCTTCTTCCAGTATATGGGATAT
GGCTCTTACGAAATAAGATTGTAATGTAAAATATTCGCACTCGCGGTTAGTCAAGAAAGT
ATTAAAGGGGCATATTTACTTACATAGTATAGATAAATAAAAAAAAAAAAAAACACTCGG
GGGCTGTAATGCAGAACTCGGGCCTCGGGGGTCACTCGTCTCGGTAGAG

consensusID : consensus_4708#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 641
fasta sequence

                              [CCGCGGACGCGTGGGCACAGACGGAGTTGTGCGATGGGTAATACAAGGAGGTAGGAGGAGTCGTAATCATTTGTTTGGGGAAATATGAACATTCGGATGAGCTAATTAAAACCCATGCACACTTACCAAAAACATGCAAAACGAAAGCGTTCTGGTAACAGTGAACAAACGCACTATGGAAGCAAACTAGCACGTACTTGAAATAAAAAATTAAAACAAAGCAAACAAAAAAATAAGAAAACTTACATGATGTAAGTAAAGAAAGCGTAACACCAAAGTCAAAGAACTTAAACCAACTCGATGATACATCCCTTTCCCATCCGCACCGCGGCATAACGCCATCCTCCGAAGTGAGGTGTCCTGTACGAGCGGACTTTAAGCATCTGTTCTTCTTTCATCCCATTATAAATGGCGTCGCTTACGATATATCAGTAGAGTATTCCGATACTGTAGTTTTCTGGTCTGGATTAATGGGAACAAAGATTTAGTTACTTTGTCATCCACTTTCTTCACTCTCCCTCAAGTGCTGCTCACAATCTATGTGTTCTCCCGTTTGCGCAAATGTACATCTCGCTGTGAAGCAAAGAAACCCCATTGACCTCATTTTGGTTCCGATTCTTCGATGGTCCCCTAAAACAATT]

[+] EMBL BM583627             [CCGCGGACGCGTGGGCACAGACGGAGTTGTGCGATGGGTAATACAAGGAGGTAGGAGGAGTCGTAATCATTTGTTTGGGGAAATATGAACATTCGGATGAGCTAATTAAAACCCATGCACACTTACCAAAAACATGCAAAACGAAAGCGTTCTGGTAACAGTGAACAAACGCACTATGGAAGCAAACTAGCACGTACTTGAAATAAAAAATTAAAACAAAGCAAACAAAAAAATAAGAAAACTTACATGATGTAAGTAAAGAAAGCGTAACACCAAAGTCAAAGAACTTAAACCAACTCGATGATACATCCCTTTCCCATCCGCACCGCGGCATAACGCCATCCTCCGAAGTGAGGTGTCCTGTACGAGCGGACTTTAAGCATCTGTTCTTCTTTCATCCCATTATAAATGGCGTCGCTTACGATATATCAGTAGAGTATTCCGATACTGTAGTTTTCTGGTCTGGATTAATGGGAACAAAGATTTAGTTACTTTGTCATCCACTTTCTTCACTCTCCCTCAAGTGCTGCTCACAATCTATGTGTTCTCCCGTTTGCGCAAATGTACATCTCGCTGTGAAGCAAAGAAACCCCATTGACCTCATTTTGGTTCCGATTCTTCGATGGTCCCCTAAAACAATT]




>consensus_4708#1
CCGCGGACGCGTGGGCACAGACGGAGTTGTGCGATGGGTAATACAAGGAGGTAGGAGGAG
TCGTAATCATTTGTTTGGGGAAATATGAACATTCGGATGAGCTAATTAAAACCCATGCAC
ACTTACCAAAAACATGCAAAACGAAAGCGTTCTGGTAACAGTGAACAAACGCACTATGGA
AGCAAACTAGCACGTACTTGAAATAAAAAATTAAAACAAAGCAAACAAAAAAATAAGAAA
ACTTACATGATGTAAGTAAAGAAAGCGTAACACCAAAGTCAAAGAACTTAAACCAACTCG
ATGATACATCCCTTTCCCATCCGCACCGCGGCATAACGCCATCCTCCGAAGTGAGGTGTC
CTGTACGAGCGGACTTTAAGCATCTGTTCTTCTTTCATCCCATTATAAATGGCGTCGCTT
ACGATATATCAGTAGAGTATTCCGATACTGTAGTTTTCTGGTCTGGATTAATGGGAACAA
AGATTTAGTTACTTTGTCATCCACTTTCTTCACTCTCCCTCAAGTGCTGCTCACAATCTA
TGTGTTCTCCCGTTTGCGCAAATGTACATCTCGCTGTGAAGCAAAGAAACCCCATTGACC
TCATTTTGGTTCCGATTCTTCGATGGTCCCCTAAAACAATT

consensusID : consensus_4708#2
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 333
fasta sequence

                              [AATGACAACAAGTTTCGATTCTCGATTCTTTAACGCTAGCAAATCGAAAAGGAGGGGCTAATGGTAGTGAACAAGGAGAATTACCGTGTTGCAAGTGAAATATTTCAAGTACTAGATCCGAGATAGTATCTACAATAGTTTAATAACACTCGGTAGTGACCAGTGTGTTGCGCATGACACACAGACGGAGTTGTGCGATGGGTAATACAAGGAGGTAGGAGGAGTCGTAATCATTTGTTTGGGGAAATATGAACATTCGGATGAGCTAATTAAAACCCATGCACACTTACCAAAAACATGCAAAACGAAAGCGTTCTGGTAACAGTGAACAAA]

[+] EMBL BM630769             [AATGACAACAAGTTTCGATTCTCGATTCTTTAACGCTAGCAAATCGAAAAGGAGGGGCTAATGGTAGTGAACAAGGAGAATTACCGTGTTGCAAGTGAAATATTTCAAGTACTAGATCCGAGATAGTATCTACAATAGTTTAATAACACTCGGTAGTGACCAGTGTGTTGCGCATGACACACAGACGGAGTTGTGCGATGGGTAATACAAGGAGGTAGGAGGAGTCGTAATCATTTGTTTGGGGAAATATGAACATTCGGATGAGCTAATTAAAACCCATGCACACTTACCAAAAACATGCAAAACGAAAGCGTTCTGGTAACAGTGAACAAA]




>consensus_4708#2
AATGACAACAAGTTTCGATTCTCGATTCTTTAACGCTAGCAAATCGAAAAGGAGGGGCTA
ATGGTAGTGAACAAGGAGAATTACCGTGTTGCAAGTGAAATATTTCAAGTACTAGATCCG
AGATAGTATCTACAATAGTTTAATAACACTCGGTAGTGACCAGTGTGTTGCGCATGACAC
ACAGACGGAGTTGTGCGATGGGTAATACAAGGAGGTAGGAGGAGTCGTAATCATTTGTTT
GGGGAAATATGAACATTCGGATGAGCTAATTAAAACCCATGCACACTTACCAAAAACATG
CAAAACGAAAGCGTTCTGGTAACAGTGAACAAA

consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_4708#0      ------------------------------------------------------------
consensus_4708#1      CCGCGGACGCGTGGGCACAGACGGAGTTGTGCGATGGGTAATACAAGGAGGTAGGAGGAG 60
consensus_4708#2      ------------------------------------------------------------
                                                                                  

consensus_4708#0      ------------------------------------------------------------
consensus_4708#1      TCGTAATCATTTGTTTGGGGAAATATGAACATTCGGATGAGCTAATTAAAACCCATGCAC 120
consensus_4708#2      ------------------------------------------------------------
                                                                                  

consensus_4708#0      ------------------------------------------------------------
consensus_4708#1      ACTTACCAAAAACATGCAAAACGAAAGCGTTCTGGTAACAGTGAACAAACGCACTATGGA 180
consensus_4708#2      ------------------------------------------------------------
                                                                                  

consensus_4708#0      ------------------------------------------------------------
consensus_4708#1      AGCAAACTAGCACGTACTTGAAATAAAAAATTAAAACAAAGCAAACAAAAAAATAAGAAA 240
consensus_4708#2      ------------------------------------------------------------
                                                                                  

consensus_4708#0      ---------CCGCCCACGCGTCCGGCGTAACACCAAAGTCAAAGAACTTAAACCAACTCG 51
consensus_4708#1      ACTTACATGATGTAAGTAAAGAAAGCGTAACACCAAAGTCAAAGAACTTAAACCAACTCG 300
consensus_4708#2      -----------------------------------------------------------A 1
                                                                                  

consensus_4708#0      ATGATACATCCCTTTCCCATCCGCACCGCGGCATAACGCCATCCT-CCGAAGTGAGGTGT 110
consensus_4708#1      ATGATACATCCCTTTCCCATCCGCACCGCGGCATAACGCCATCCT-CCGAAGTGAGGTGT 359
consensus_4708#2      ATGA--CAACAAGTTTCGATTCTCGATTC--TTTAACGCTAGCAAATCGAAAAGGAGGGG 57
                      ****  ** *   ** * ** * *    *    ****** * *    ****  *  * * 

consensus_4708#0      CCTGTACGAGCGGACTTTAAGCATCTGTTCTTCTTTCATCCCATTATAAATGGCGTCGCT 170
consensus_4708#1      CCTGTACGAGCGGACTTTAAGCATCTGTTCTTCTTTCATCCCATTATAAATGGCGTCGCT 419
consensus_4708#2      CTAATGGTAGTGAACAAGGAGAATTA--CCGTGTTGCAA------GTGAAATATTTCAAG 109
                      *   *   ** * **    ** **     * * ** **        * **     **   

consensus_4708#0      TACGATATATCAGTAGAGTATTCCGATACTGTAGTTTTCTGGTCTGGATTAATGGGAACA 230
consensus_4708#1      TACGATATATCAGTAGAGTATTCCGATACTGTAGTTTTCTGGTCTGGATTAATGGGAACA 479
consensus_4708#2      TACTAGAT-CCGAGATAGTATC----TACAATAGTTTAATAACACTCGGTAGTGACCAGT 164
                      *** * **  *   * *****     ***  ******  *         ** **   *  

consensus_4708#0      AAGATTTAGTTACTTTGTCATCCACTTTCTTCACTCTCCCTCAAGTGCTGCTCACAATCT 290
consensus_4708#1      AAGATTTAGTTACTTTGTCATCCACTTTCTTCACTCTCCCTCAAGTGCTGCTCACAATCT 539
consensus_4708#2      GTGTTGCGCATGACACACAGACGGAGTTGTGCGATGGGTAATACAAGGAGGTAGGAGGAG 224
                        * *     *          *    ** * *  *       *   *  * *   *    

consensus_4708#0      ATGTGTTCTCCCTTTTGCGCAAATGTACATCTCGCTGTGAAGCAAAGAAACCCCATTGAC 350
consensus_4708#1      ATGTGTTCTCCCGTTTGCGCAAATGTACATCTCGCTGTGAAGCAAAGAAACCCCATTGAC 599
consensus_4708#2      TCGTAATCATTTGTTTGGGGAAATATGAACATTCGGATGAGCTAATTAAAACCCATGCAC 284
                        **  **     **** * **** *  *  *     ***   **  *** *****  **

consensus_4708#0      CTCATTTTGGTTCCGATTCTTCGATGGTCCCCTAA-AACAATTTCCCATTTTTGTGACAT 409
consensus_4708#1      CTCATTTTGGTTCCGATTCTTCGATGGTCCCCTAA-AACAATT----------------- 641
consensus_4708#2      ACTTACCAAAAACATGCAAAACGAAAGCGTTCTGGTAACAGTGAACAAA----------- 333
                                  *        ***  *    **   **** *                  

consensus_4708#0      TGCGTCATAAGTGGCAGCATTGTACAATGTCTTTTTGTTTTTGCTACTTCTTCTTCCAGT 469
consensus_4708#1      ------------------------------------------------------------
consensus_4708#2      ------------------------------------------------------------
                                                                                  

consensus_4708#0      ATATGGGATATGGCTCTTACGAAATAAGATTGTAATGTAAAATATTCGCACTCGCGGTTA 529
consensus_4708#1      ------------------------------------------------------------
consensus_4708#2      ------------------------------------------------------------
                                                                                  

consensus_4708#0      GTCAAGAAAGTATTAAAGGGGCATATTTACTTACATAGTATAGATAAATAAAAAAAAAAA 589
consensus_4708#1      ------------------------------------------------------------
consensus_4708#2      ------------------------------------------------------------
                                                                                  

consensus_4708#0      AAAACACTCGGGGGCTGTAATGCAGAACTCGGGCCTCGGGGGTCACTCGTCTCGGTAGAG 649
consensus_4708#1      ------------------------------------------------------------
consensus_4708#2      ------------------------------------------------------------