cluster # 4714

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Anopheles gambiae
cluster # 4714 cluster # 4714 Sequences # 3 consensus # 2

see consensus multiple alignment with clustalw

Direct access to contigs :

consensus_4714#0 length = 915 sequences # 1

consensus_4714#1 length = 653 sequences # 2

consensusID : consensus_4714#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 915
fasta sequence

                              [ATCGGCACGAGGTATTATGTCAGTGCTGAGTTTTCGGAGCTATTGCAGTAGTCGCGGTATACAGCACGTCACAACTGCGCCATTCCATCCGCAATCGAATGGGCAGGCGGAGCGCTTTGTTGACACCTTCAAGCGGTCGATGAGGAAGATCCAGGAAGGGGGAACAACGCAGGACGAAGCGCTTGACGTTTTTCTGGCGAGCTACCGGTCAACCCCCAACGCTATTTTGCCTGACATGCAGTCGCCAGCTGAAGCCATGCTAGGCAGAAAAATGCGAACAGCGTTGGCACTGCTGAAACCTCCACCTGCAGCGCAAGCAGAACCGGCCAACTTGGATAGACGATTTCAGCGCGGTGACCTCGTCTACGCCAAGTTCTATGCGCGGAATTCATGGAAGTGGGTTCCGGCGCAAATCATACGAGAGTTGGGCAGCGTTATGTTCGAGGTGCAGACGAACAAGTCATCGGGTTCACAGGCGCCATGTGAACCAGCTGCGAAAACGTGATTCGGCCGTGGGGGCTTCCAGCGAGGACGTGGACATAGATCATTTGCCGTNTTGATCTGCTGACGGACAACGCGGTAGCGGAATCGAGTTCTGTTCCCTTGACGGACCATCAAACTAGACGCGTAAACCACACAAAGCCATCTCCACGGACCCAAATCCCCGTTCGGTTACTACAAAANCGCCCAGGACAAGACNCGAATTACGGGTNGGCCACGCCCGGTCCTTACCTAAGGGCCTTACGAAGGAACTTTCCGGCGNTAGGCGTCCCGAAGGAGGGTATTCNGTCTGCGTAACGTTACAAACGGGGGNACAATGTTCGTGAGGCTAGACCCTNGGGCCCGGACACTCAGTTCACCCGGCGGGTAGACTCCACCGGGATTACACGCTAGACAAAGNGCGTCNACTCCAGC]

[+] EMBL BX469627             [ATCGGCACGAGGTATTATGTCAGTGCTGAGTTTTCGGAGCTATTGCAGTAGTCGCGGTATACAGCACGTCACAACTGCGCCATTCCATCCGCAATCGAATGGGCAGGCGGAGCGCTTTGTTGACACCTTCAAGCGGTCGATGAGGAAGATCCAGGAAGGGGGAACAACGCAGGACGAAGCGCTTGACGTTTTTCTGGCGAGCTACCGGTCAACCCCCAACGCTATTTTGCCTGACATGCAGTCGCCAGCTGAAGCCATGCTAGGCAGAAAAATGCGAACAGCGTTGGCACTGCTGAAACCTCCACCTGCAGCGCAAGCAGAACCGGCCAACTTGGATAGACGATTTCAGCGCGGTGACCTCGTCTACGCCAAGTTCTATGCGCGGAATTCATGGAAGTGGGTTCCGGCGCAAATCATACGAGAGTTGGGCAGCGTTATGTTCGAGGTGCAGACGAACAAGTCATCGGGTTCACAGGCGCCATGTGAACCAGCTGCGAAAACGTGATTCGGCCGTGGGGGCTTCCAGCGAGGACGTGGACATAGATCATTTGCCGTNTTGATCTGCTGACGGACAACGCGGTAGCGGAATCGAGTTCTGTTCCCTTGACGGACCATCAAACTAGACGCGTAAACCACACAAAGCCATCTCCACGGACCCAAATCCCCGTTCGGTTACTACAAAANCGCCCAGGACAAGACNCGAATTACGGGTNGGCCACGCCCGGTCCTTACCTAAGGGCCTTACGAAGGAACTTTCCGGCGNTAGGCGTCCCGAAGGAGGGTATTCNGTCTGCGTAACGTTACAAACGGGGGNACAATGTTCGTGAGGCTAGACCCTNGGGCCCGGACACTCAGTTCACCCGGCGGGTAGACTCCACCGGGATTACACGCTAGACAAAGNGCGTCNACTCCAGC]




>consensus_4714#0
ATCGGCACGAGGTATTATGTCAGTGCTGAGTTTTCGGAGCTATTGCAGTAGTCGCGGTAT
ACAGCACGTCACAACTGCGCCATTCCATCCGCAATCGAATGGGCAGGCGGAGCGCTTTGT
TGACACCTTCAAGCGGTCGATGAGGAAGATCCAGGAAGGGGGAACAACGCAGGACGAAGC
GCTTGACGTTTTTCTGGCGAGCTACCGGTCAACCCCCAACGCTATTTTGCCTGACATGCA
GTCGCCAGCTGAAGCCATGCTAGGCAGAAAAATGCGAACAGCGTTGGCACTGCTGAAACC
TCCACCTGCAGCGCAAGCAGAACCGGCCAACTTGGATAGACGATTTCAGCGCGGTGACCT
CGTCTACGCCAAGTTCTATGCGCGGAATTCATGGAAGTGGGTTCCGGCGCAAATCATACG
AGAGTTGGGCAGCGTTATGTTCGAGGTGCAGACGAACAAGTCATCGGGTTCACAGGCGCC
ATGTGAACCAGCTGCGAAAACGTGATTCGGCCGTGGGGGCTTCCAGCGAGGACGTGGACA
TAGATCATTTGCCGTNTTGATCTGCTGACGGACAACGCGGTAGCGGAATCGAGTTCTGTT
CCCTTGACGGACCATCAAACTAGACGCGTAAACCACACAAAGCCATCTCCACGGACCCAA
ATCCCCGTTCGGTTACTACAAAANCGCCCAGGACAAGACNCGAATTACGGGTNGGCCACG
CCCGGTCCTTACCTAAGGGCCTTACGAAGGAACTTTCCGGCGNTAGGCGTCCCGAAGGAG
GGTATTCNGTCTGCGTAACGTTACAAACGGGGGNACAATGTTCGTGAGGCTAGACCCTNG
GGCCCGGACACTCAGTTCACCCGGCGGGTAGACTCCACCGGGATTACACGCTAGACAAAG
NGCGTCNACTCCAGC

consensusID : consensus_4714#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 2
consensus length = 653
fasta sequence

                              [AAGTGGCCAGAGGTGATACGAACGCGAAGTACCACATCAGCAGCAACGATCGCGATACTGAGGTCAATCTTTGCGAGATTTGGATACCCGGAAACGATGGTGAGCGACAACGGGCCACAATTTGTCAGTGCTGAGTTTTCGGAGTATTGCAGTAGTCGCGGTATACAGCACGTCACAACTGCGCCATTCCATCCGCAATCGAATGGGCAGGCGGAGCGCTTTGTTGACACCTTCAAGCGGTCGATGAGGAAGATCCAGGAAGGGGGAACAACGCAGGACGAAGCGCTTGACGTTTTTCTGGCGAGCTACCGGTCAACCCCCAACGCTATTTTGCCTGACATGCAGTCGCCAGCTGAAGCNATGCTAGGCAGAAAAATGCGAACAGCGTTGGCACTGCTGAAACCTCCACCTGCAGCGCNAGCAG-ACCGG-CAAC-TGGAT-GACGA-TTCAG-GCNGTGACCTCGTCTACGCCAAGTTCTATGCGCGGAATTCATGGAAGTGGGTTCCGGCGCAAGATCATACGAGAGTTGGGCAGCGTTATGTTCGAGGTGCAGACGAACAATCAACGGGTTCACAGGCGCCATGTGAACCAGCTGCGAAAACGTGATTCGGCCGTGGGGGGCTTCCAGCGAGGACGTGGACATAGGATCATTTGCC]

[+] EMBL BX619329             [AAGTGGCCAGAGGTGATACGAACGCGAAGTACCACATCAGCAGCAACGATCGCGATACTGAGGTCAATCTTTGCGAGATTTGGATACCCGGAAACGATGGTGAGCGACAACGGGCCACAATTTGTCAGTGCTGAGTTTTCGGAGTATTGCAGTAGTCGCGGTATACAGCACGTCACAACTGCGCCATTCCATCCGCAATCGAATGGGCAGGCGGAGCGCTTTGTTGACACCTTCAAGCGGTCGATGAGGAAGATCCAGGAAGGGGGAACAACGCAGGACGAAGCGCTTGACGTTTTTCTGGCGAGCTACCGGTCAACCCCCAACGCTATTTTGCCTGACATGCAGTCGCCAGCTGAAGCNATGCTAGGCAGAAAAATGCGAACAGCGTTGGCACTGCTGAAACCTCCACCTGCAGCGCNAGCAG ACCGG CAAC TGGAT GACGA TTCAG GCNGTG                                                                                                                                                                                                       ]
[+] EMBL BX467947             [                            ggcaagaATCGGCACGNAGGA CGCGATACTGAGGTCAATCTTTGCGAGATTTGGATACCCGGAAACGATGGTGAGCGACAACGGGCCACAATTTGTCAGTGCTGAGTTTTCGGAGTATTGCAGTAGTCGCGGTATACAGCACGTCACAACTGCGCCATTCCATCCGCAATCGAATGGGCAGGCGGAGCGCTTTGTTGACACCTTCAAGCGGTCGATGAGGAAGATCCAGGAAGGGGGAACAACGCAGGACGAAGCGCTTGACGTTTTTCTGGCGAGCTACCGGTCAACTCCCAACGCTATTTTGCCGGACATGCAGTCGCCAGCTGAAGCCATGCTAGGCAGAAAAATGCGAACAGCGTTGGAATTGCTGAAACCTCCACCTGCAGCGCAAGCAGAACCGGCCAACTTGGATAGACGATTTCAGCGCGGTGACCTCGTCTACGCCAAGTTCTATGCGCGGAATTCATGGAAGTGGGTTCCGGCGCAAGATCATACGAGAGTTGGGCAGCGTTATGTTCGAGGTGCAGACGAACAATCAACGGGTTCACAGGCGCCATGTGAACCAGCTGCGAAAACGTGATTCGGCCGTGGGGGGCTTCCAGCGAGGACGTGGACATAGGATCATTTGCC]




>consensus_4714#1
AAGTGGCCAGAGGTGATACGAACGCGAAGTACCACATCAGCAGCAACGATCGCGATACTG
AGGTCAATCTTTGCGAGATTTGGATACCCGGAAACGATGGTGAGCGACAACGGGCCACAA
TTTGTCAGTGCTGAGTTTTCGGAGTATTGCAGTAGTCGCGGTATACAGCACGTCACAACT
GCGCCATTCCATCCGCAATCGAATGGGCAGGCGGAGCGCTTTGTTGACACCTTCAAGCGG
TCGATGAGGAAGATCCAGGAAGGGGGAACAACGCAGGACGAAGCGCTTGACGTTTTTCTG
GCGAGCTACCGGTCAACCCCCAACGCTATTTTGCCTGACATGCAGTCGCCAGCTGAAGCN
ATGCTAGGCAGAAAAATGCGAACAGCGTTGGCACTGCTGAAACCTCCACCTGCAGCGCNA
GCAGACCGGCAACTGGATGACGATTCAGGCNGTGACCTCGTCTACGCCAAGTTCTATGCG
CGGAATTCATGGAAGTGGGTTCCGGCGCAAGATCATACGAGAGTTGGGCAGCGTTATGTT
CGAGGTGCAGACGAACAATCAACGGGTTCACAGGCGCCATGTGAACCAGCTGCGAAAACG
TGATTCGGCCGTGGGGGGCTTCCAGCGAGGACGTGGACATAGGATCATTTGCC

consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_4714#0      ------------------------------------------------------------
consensus_4714#1      AAGTGGCCAGAGGTGATACGAACGCGAAGTACCACATCAGCAGCAACGATCGCGATACTG 60
                                                                                  

consensus_4714#0      ---------------------------------------------ATCGGCACGAGGTAT 15
consensus_4714#1      AGGTCAATCTTTGCGAGATTTGGATACCCGGAAACGATGGTGAGCGACAACGGGCCACAA 120
                                                                     *  *  *    * 

consensus_4714#0      TATGTCAGTGCTGAGTTTTCGGAGCTATTGCAGTAGTCGCGGTATACAGCACGTCACAAC 75
consensus_4714#1      TTTGTCAGTGCTGAGTTTTCGGAG-TATTGCAGTAGTCGCGGTATACAGCACGTCACAAC 179
                      * ********************** ***********************************

consensus_4714#0      TGCGCCATTCCATCCGCAATCGAATGGGCAGGCGGAGCGCTTTGTTGACACCTTCAAGCG 135
consensus_4714#1      TGCGCCATTCCATCCGCAATCGAATGGGCAGGCGGAGCGCTTTGTTGACACCTTCAAGCG 239
                      ************************************************************

consensus_4714#0      GTCGATGAGGAAGATCCAGGAAGGGGGAACAACGCAGGACGAAGCGCTTGACGTTTTTCT 195
consensus_4714#1      GTCGATGAGGAAGATCCAGGAAGGGGGAACAACGCAGGACGAAGCGCTTGACGTTTTTCT 299
                      ************************************************************

consensus_4714#0      GGCGAGCTACCGGTCAACCCCCAACGCTATTTTGCCTGACATGCAGTCGCCAGCTGAAGC 255
consensus_4714#1      GGCGAGCTACCGGTCAACCCCCAACGCTATTTTGCCTGACATGCAGTCGCCAGCTGAAGC 359
                      ************************************************************

consensus_4714#0      CATGCTAGGCAGAAAAATGCGAACAGCGTTGGCACTGCTGAAACCTCCACCTGCAGCGCA 315
consensus_4714#1      NATGCTAGGCAGAAAAATGCGAACAGCGTTGGCACTGCTGAAACCTCCACCTGCAGCGCN 419
                       ********************************************************** 

consensus_4714#0      AGCAGAACCGGCCAACTTGGATAGACGATTTCAGCGCGGTGACCTCGTCTACGCCAAGTT 375
consensus_4714#1      AGCAGA-CCGGC--AACTGGAT-GACGATT-CAG-GCNGTGACCTCGTCTACGCCAAGTT 473
                      ****** *****  *  ***** ******* *** ** **********************

consensus_4714#0      CTATGCGCGGAATTCATGGAAGTGGGTTCCGGCGCAA-ATCATACGAGAGTTGGGCAGCG 434
consensus_4714#1      CTATGCGCGGAATTCATGGAAGTGGGTTCCGGCGCAAGATCATACGAGAGTTGGGCAGCG 533
                      ************************************* **********************

consensus_4714#0      TTATGTTCGAGGTGCAGACGAACAAGTCATCGGGTTCACAGGCGCCATGTGAACCAGCTG 494
consensus_4714#1      TTATGTTCGAGGTGCAGACGAACAA-TCAACGGGTTCACAGGCGCCATGTGAACCAGCTG 592
                      ************************* *** ******************************

consensus_4714#0      CGAAAACGTGATTCGGCCGTGGGGG-CTTCCAGCGAGGACGTGGACATAG-ATCATTTGC 552
consensus_4714#1      CGAAAACGTGATTCGGCCGTGGGGGGCTTCCAGCGAGGACGTGGACATAGGATCATTTGC 652
                      ************************* ************************ *********

consensus_4714#0      CGTNTTGATCTGCTGACGGACAACGCGGTAGCGGAATCGAGTTCTGTTCCCTTGACGGAC 612
consensus_4714#1      C----------------------------------------------------------- 653
                      *                                                           

consensus_4714#0      CATCAAACTAGACGCGTAAACCACACAAAGCCATCTCCACGGACCCAAATCCCCGTTCGG 672
consensus_4714#1      ------------------------------------------------------------
                                                                                  

consensus_4714#0      TTACTACAAAANCGCCCAGGACAAGACNCGAATTACGGGTNGGCCACGCCCGGTCCTTAC 732
consensus_4714#1      ------------------------------------------------------------
                                                                                  

consensus_4714#0      CTAAGGGCCTTACGAAGGAACTTTCCGGCGNTAGGCGTCCCGAAGGAGGGTATTCNGTCT 792
consensus_4714#1      ------------------------------------------------------------
                                                                                  

consensus_4714#0      GCGTAACGTTACAAACGGGGGNACAATGTTCGTGAGGCTAGACCCTNGGGCCCGGACACT 852
consensus_4714#1      ------------------------------------------------------------
                                                                                  

consensus_4714#0      CAGTTCACCCGGCGGGTAGACTCCACCGGGATTACACGCTAGACAAAGNGCGTCNACTCC 912
consensus_4714#1      ------------------------------------------------------------
                                                                                  

consensus_4714#0      AGC 915
consensus_4714#1      ---