cluster # 4718

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Anopheles gambiae
cluster # 4718 cluster # 4718 Sequences # 3 consensus # 3

see consensus multiple alignment with clustalw

Direct access to contigs :

consensus_4718#0 length = 688 sequences # 1

consensus_4718#1 length = 666 sequences # 1
consensus_4718#2 length = 574 sequences # 1

consensusID : consensus_4718#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 688
fasta sequence

                              [AGCACGCATGACGCCAAGCGTTACCTCGTGGGCCATCCGTTCTCCAGCGACCCATTCACAAGAGCGTTGCTAGCAGCAGTGTGGTCACAACGATAAGCATATGGCCAAGTACGACTTTCCTAGTCGAAGTGCCATCGTTGGTCCACTTCAGTCCAGAATAGTTAATGTTTGGAACGTTTTGTTATAACAACATAGGAGAGTATTGCGGCACACACACTGGTACGTGGAGATTAGGATAGGAAAGGAGAATAGTTCCAGGGTGGAACGATCCAACAAAAAATTAAAGCACTCATAAGGTGACAGGAATAACGGATTCGAACAGGTTTAGTCGAGCCTCGGCTTGTCCAACCTTGTTGGTGGCTTTGCACACATAGTCACCGTAATGCTCTGCGGCCACAGAATGAATCTTTACCACGGACGTGGTTACATCGTCCGGCGAGCCAATCTGCGAGATGCTGTACGAACCGCCGTTATGGATTTGTTTGCCATCGCGGTACCAGGAGATGGCGGGAGCAGGAAAAGCCTGCACCACACATTCCACATCGATGTCGTAATCGAGCGCCTGCGCTACCTTCGGNCGTGGCACACGGATAACCGGCGCAAACTCCACCTCGAGCGTGATCGTTTTCGTGTCCGCACGGNCCACCCCGTTGTCCGCCGTGCAATAGTACGTGCCACGGTCCTCCCG]

[+] EMBL BX620175             [AGCACGCATGACGCCAAGCGTTACCTCGTGGGCCATCCGTTCTCCAGCGACCCATTCACAAGAGCGTTGCTAGCAGCAGTGTGGTCACAACGATAAGCATATGGCCAAGTACGACTTTCCTAGTCGAAGTGCCATCGTTGGTCCACTTCAGTCCAGAATAGTTAATGTTTGGAACGTTTTGTTATAACAACATAGGAGAGTATTGCGGCACACACACTGGTACGTGGAGATTAGGATAGGAAAGGAGAATAGTTCCAGGGTGGAACGATCCAACAAAAAATTAAAGCACTCATAAGGTGACAGGAATAACGGATTCGAACAGGTTTAGTCGAGCCTCGGCTTGTCCAACCTTGTTGGTGGCTTTGCACACATAGTCACCGTAATGCTCTGCGGCCACAGAATGAATCTTTACCACGGACGTGGTTACATCGTCCGGCGAGCCAATCTGCGAGATGCTGTACGAACCGCCGTTATGGATTTGTTTGCCATCGCGGTACCAGGAGATGGCGGGAGCAGGAAAAGCCTGCACCACACATTCCACATCGATGTCGTAATCGAGCGCCTGCGCTACCTTCGGNCGTGGCACACGGATAACCGGCGCAAACTCCACCTCGAGCGTGATCGTTTTCGTGTCCGCACGGNCCACCCCGTTGTCCGCCGTGCAATAGTACGTGCCACGGTCCTCCCG]




>consensus_4718#0
AGCACGCATGACGCCAAGCGTTACCTCGTGGGCCATCCGTTCTCCAGCGACCCATTCACA
AGAGCGTTGCTAGCAGCAGTGTGGTCACAACGATAAGCATATGGCCAAGTACGACTTTCC
TAGTCGAAGTGCCATCGTTGGTCCACTTCAGTCCAGAATAGTTAATGTTTGGAACGTTTT
GTTATAACAACATAGGAGAGTATTGCGGCACACACACTGGTACGTGGAGATTAGGATAGG
AAAGGAGAATAGTTCCAGGGTGGAACGATCCAACAAAAAATTAAAGCACTCATAAGGTGA
CAGGAATAACGGATTCGAACAGGTTTAGTCGAGCCTCGGCTTGTCCAACCTTGTTGGTGG
CTTTGCACACATAGTCACCGTAATGCTCTGCGGCCACAGAATGAATCTTTACCACGGACG
TGGTTACATCGTCCGGCGAGCCAATCTGCGAGATGCTGTACGAACCGCCGTTATGGATTT
GTTTGCCATCGCGGTACCAGGAGATGGCGGGAGCAGGAAAAGCCTGCACCACACATTCCA
CATCGATGTCGTAATCGAGCGCCTGCGCTACCTTCGGNCGTGGCACACGGATAACCGGCG
CAAACTCCACCTCGAGCGTGATCGTTTTCGTGTCCGCACGGNCCACCCCGTTGTCCGCCG
TGCAATAGTACGTGCCACGGTCCTCCCG

consensusID : consensus_4718#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 666
fasta sequence

                              [GCAACTAGTTTCTGGTCGCCATTGCTGCTNCTCTGTTGTNCTTTCCTCTTTGTCGCTATTGCAACTATAATTTGTACCCATTGTGCCCTCTCATAAATAGNCCCCCNAACCCGGCCCTTGATTGCGCGAGAATTAACTGGCNGATCCGNCCCGGGTCTTCATTTCACTGTTTACCCTGACCTGGACGCACGGAAAGCTGTACCGTTTAAATCTNTGCACCTTTTCGCGCTCTTTGCACACCCTCAACTCCGAAGGCCTTGTACGAGGGAAAGGACTGGACTATGAGTNTAANACGACTTAATAGTAGATTGTATCCGTGATTGTACTATCAGTATTCTATCCTGCCAAGTAGAAGAATTGGCTGNTGGTTCTTGATTGGCACGAAACATTCACGGTTTGTTCGTCTTTCACGTGTCGCCTGGTGTGCTTAAATAGCTACCTGATGTGGTGAGTAATTCCCACTGTAAAAGTTGGCTCATCGTCTGGTTGTTGCTATGGACCCGAGAAAGCACGCATGACGCCAAGCGTTACNTCGTGGCAATCCGTTCTCCAGCGACCCATTCACAAGAGCGTTGCTAGCAGCAGTGTGGTCACAACGATAAGTCATATGGCACAAGTNAGCGACTTTCCTAGTCGAGTTCTNATCGCCTGTCCGATTCTGCCTGA]

[-] EMBL BX466340             [GCAACTAGTTTCTGGTCGCCATTGCTGCTNCTCTGTTGTNCTTTCCTCTTTGTCGCTATTGCAACTATAATTTGTACCCATTGTGCCCTCTCATAAATAGNCCCCCNAACCCGGCCCTTGATTGCGCGAGAATTAACTGGCNGATCCGNCCCGGGTCTTCATTTCACTGTTTACCCTGACCTGGACGCACGGAAAGCTGTACCGTTTAAATCTNTGCACCTTTTCGCGCTCTTTGCACACCCTCAACTCCGAAGGCCTTGTACGAGGGAAAGGACTGGACTATGAGTNTAANACGACTTAATAGTAGATTGTATCCGTGATTGTACTATCAGTATTCTATCCTGCCAAGTAGAAGAATTGGCTGNTGGTTCTTGATTGGCACGAAACATTCACGGTTTGTTCGTCTTTCACGTGTCGCCTGGTGTGCTTAAATAGCTACCTGATGTGGTGAGTAATTCCCACTGTAAAAGTTGGCTCATCGTCTGGTTGTTGCTATGGACCCGAGAAAGCACGCATGACGCCAAGCGTTACNTCGTGGCAATCCGTTCTCCAGCGACCCATTCACAAGAGCGTTGCTAGCAGCAGTGTGGTCACAACGATAAGTCATATGGCACAAGTNAGCGACTTTCCTAGTCGAGTTCTNATCGCCTGTCCGATTCTGCCTGA]




>consensus_4718#1
GCAACTAGTTTCTGGTCGCCATTGCTGCTNCTCTGTTGTNCTTTCCTCTTTGTCGCTATT
GCAACTATAATTTGTACCCATTGTGCCCTCTCATAAATAGNCCCCCNAACCCGGCCCTTG
ATTGCGCGAGAATTAACTGGCNGATCCGNCCCGGGTCTTCATTTCACTGTTTACCCTGAC
CTGGACGCACGGAAAGCTGTACCGTTTAAATCTNTGCACCTTTTCGCGCTCTTTGCACAC
CCTCAACTCCGAAGGCCTTGTACGAGGGAAAGGACTGGACTATGAGTNTAANACGACTTA
ATAGTAGATTGTATCCGTGATTGTACTATCAGTATTCTATCCTGCCAAGTAGAAGAATTG
GCTGNTGGTTCTTGATTGGCACGAAACATTCACGGTTTGTTCGTCTTTCACGTGTCGCCT
GGTGTGCTTAAATAGCTACCTGATGTGGTGAGTAATTCCCACTGTAAAAGTTGGCTCATC
GTCTGGTTGTTGCTATGGACCCGAGAAAGCACGCATGACGCCAAGCGTTACNTCGTGGCA
ATCCGTTCTCCAGCGACCCATTCACAAGAGCGTTGCTAGCAGCAGTGTGGTCACAACGAT
AAGTCATATGGCACAAGTNAGCGACTTTCCTAGTCGAGTTCTNATCGCCTGTCCGATTCT
GCCTGA

consensusID : consensus_4718#2
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 574
fasta sequence

                              [ACCGCCTGATGGCGAGATATGCGATCGCCGGGCTCATTCATGTTACTGACTGGAGCACGGAAATGTACTTTAAATTTGCACTTTGCGTTTTGCACACCCTCAATCGAAGGCTTGTACGAGGAAAGGATGGATATGATTTAAACGACTTAATAGTAGATTGTATCCTGATTGTACTATCAGTATTCTATCTGCAAGTAGAAGATTGGTGGTGGTTCTTGATTGGCACGAAACATTCACGGTTGTTCGTTTTCACTGTCGCTGGTGTGTTAATAGTACTGATGTGGTGAGTAATTCCCATGTAAAAGTTGGCTCATCGTCTGGTTGTTGCTATGGAGCCGAGAAAGCACGCATGACGCCAAGCGTTACCTCGTGGGCCATCCGTTCTCCAGCGACCCATTCACAAGAGCGTTGCTAGCAGCAGTGTGGTCACAACGATAAGCATATGGCCAAGTACGACTTTCCTAGTCGAGGTGCCATCGTTGGTCCACTTCAGTCCAGAATAGTTAATGTTTGGAACGTTTTGTTCAAACAGGTTTAGTCGAGCCTCGGCTTGCCCAACCTTGTTGGTCGCCTT]

[-] EMBL BX611052             [ACCGCCTGATGGCGAGATATGCGATCGCCGGGCTCATTCATGTTACTGACTGGAGCACGGAAATGTACTTTAAATTTGCACTTTGCGTTTTGCACACCCTCAATCGAAGGCTTGTACGAGGAAAGGATGGATATGATTTAAACGACTTAATAGTAGATTGTATCCTGATTGTACTATCAGTATTCTATCTGCAAGTAGAAGATTGGTGGTGGTTCTTGATTGGCACGAAACATTCACGGTTGTTCGTTTTCACTGTCGCTGGTGTGTTAATAGTACTGATGTGGTGAGTAATTCCCATGTAAAAGTTGGCTCATCGTCTGGTTGTTGCTATGGAGCCGAGAAAGCACGCATGACGCCAAGCGTTACCTCGTGGGCCATCCGTTCTCCAGCGACCCATTCACAAGAGCGTTGCTAGCAGCAGTGTGGTCACAACGATAAGCATATGGCCAAGTACGACTTTCCTAGTCGAGGTGCCATCGTTGGTCCACTTCAGTCCAGAATAGTTAATGTTTGGAACGTTTTGTTCAAACAGGTTTAGTCGAGCCTCGGCTTGCCCAACCTTGTTGGTCGCCTT]




>consensus_4718#2
ACCGCCTGATGGCGAGATATGCGATCGCCGGGCTCATTCATGTTACTGACTGGAGCACGG
AAATGTACTTTAAATTTGCACTTTGCGTTTTGCACACCCTCAATCGAAGGCTTGTACGAG
GAAAGGATGGATATGATTTAAACGACTTAATAGTAGATTGTATCCTGATTGTACTATCAG
TATTCTATCTGCAAGTAGAAGATTGGTGGTGGTTCTTGATTGGCACGAAACATTCACGGT
TGTTCGTTTTCACTGTCGCTGGTGTGTTAATAGTACTGATGTGGTGAGTAATTCCCATGT
AAAAGTTGGCTCATCGTCTGGTTGTTGCTATGGAGCCGAGAAAGCACGCATGACGCCAAG
CGTTACCTCGTGGGCCATCCGTTCTCCAGCGACCCATTCACAAGAGCGTTGCTAGCAGCA
GTGTGGTCACAACGATAAGCATATGGCCAAGTACGACTTTCCTAGTCGAGGTGCCATCGT
TGGTCCACTTCAGTCCAGAATAGTTAATGTTTGGAACGTTTTGTTCAAACAGGTTTAGTC
GAGCCTCGGCTTGCCCAACCTTGTTGGTCGCCTT

consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_4718#1      GCAACTAGTTTCTGGTCGCCATTGCTGCTNCTCTGTTGTNCTTTCCTCTTTGTCGCTATT 60
consensus_4718#2      ------------------------------------------------------------
consensus_4718#0      -----------------AGCACGCATGACGCCAAGCGTTACCTCGTGGGCCATCCGTTCT 43
                                                                                  

consensus_4718#1      GCAACTATAATTTGTACCCATTGTGCCCTCTCATAAATAGNCCCCCNAACCCGGCCCTTG 120
consensus_4718#2      ------------------------------------------------------------
consensus_4718#0      CCAGCGACCCATTCACAAGAGCGTTGCTAGCAGCAGTGTGGTCACAACGATAAGCATATG 103
                                                                                  

consensus_4718#1      ATTGCGCGAGAATTAACTGGCNGATCCGNCCCGGGTC-TTCATTTCACTGTTTACCCTGA 179
consensus_4718#2      ACCGCCTGATGGCGAGATATGCGATC--GCCGGGCTCATTCATGTTACTGA--------- 49
consensus_4718#0      GCCAAGTACGACTTTCCTAGTCGAAGTGCCATCGTTGGTCCACTTCAGTCCAGAAT---- 159
                                       *    **     *   * *  * **  * * *           

consensus_4718#1      CCTGGACGCACGGAAAGCTGTACCGTTTAAATCTNTGCACCTTTTCGCGCTCTTTGCACA 239
consensus_4718#2      -CTGGA-GCACGGAAA--TGTAC--TTTAAAT--TTGCACTTT-----GCGTTTTGCACA 96
consensus_4718#0      AGTTAATGTTTGGAACGTTTTGTTATAACAACATAGGAGAGTAT-----TGCGGCACACA 214
                        *  * *   ****   * *    *   **     *    *              ****

consensus_4718#1      CCCTCAACTCCGAAGGCCTTGTACGAGGGAAAGGACTGGACTATGAGTNTAANACGACTT 299
consensus_4718#2      CCCTCAAT--CGAAGGC-TTGTACGAGGAAAGGA--TGGA-TATGATTT--AAACGACTT 148
consensus_4718#0      CACTGGTACGTGGAGAT-TAGGATAGGAAAGGAGAATAGTTCCAGGGTG--GAACGATCC 271
                      * **       * **   * * *   *  *      * *     *  *     ****   

consensus_4718#1      AATAGTAGATTGTATCCGTGATT--GTACTATCAGTATTCTATCCTGCCAAGTAGA---- 353
consensus_4718#2      AATAGTAGATTGTATCC-TGATT--GTACTATCAGTATTCTATCTG--CAAGTAGA---- 199
consensus_4718#0      AACAAAAAATTAAAGCACTCATAAGGTGACAGGAATAACGGATTCGAACAGGTTTAGTCG 331
                      ** *  * ***  * *  * **   **   *  * **    **     ** **  *    

consensus_4718#1      AGAATTGGC-TGNTGGTTCTTGATTGGCACGAAACATTCACGGTTTGTTCGTCTTTCACG 412
consensus_4718#2      AGA-TTGG--TGGTGGTTCTTGATTGGCACGAAACATTCACGGTT-GTTCGT-TTTCAC- 253
consensus_4718#0      AGCCTCGGCTTGTCCAACCTTGTTGGTGGCTTTGCACACATAGTCACCGTAATGCTCTGC 391
                      **  * **  **      **** * *   *    **  **  **           **   

consensus_4718#1      TGTCGCCTGGTGTGCTT---------AAATAGCTACCTGATGTGGTGAGT-AATTCCCAC 462
consensus_4718#2      TGTCGC-TGGTGTGTT-----------AATAGTA--CTGATGTGGTGAGT-AATTCCCA- 297
consensus_4718#0      GGCCACAGAATGAATCTTTACCACGGACGTGGTTACATCGTCCGGCGAGCCAATCTGCGA 451
                       * * *    **                 * *     *  *  ** ***  ***   *  

consensus_4718#1      TGTAAAAGTTGGCTCATCGTCTGGTTGTTGCTATGGACCCGAGAAAGCACGC-ATGACGC 521
consensus_4718#2      TGTAAAAGTTGGCTCATCGTCTGGTTGTTGCTATGGAGCCGAGAAAGCACGC-ATGACGC 356
consensus_4718#0      GATGCTGTACGAACCGCCGTTATGGATTTGTT-TGCCATCGCGGTACCAGGAGATGGCGG 510
                        *       *   *  ***   *   *** * **    ** *  * ** *  *** ** 

consensus_4718#1      CAAGCGTTACNTCGTGG-CAATCCGTTCTCCAGCGAC-CCATTCACAAGAGCGT-TGCTA 578
consensus_4718#2      CAAGCGTTACCTCGTGGGCCATCCGTTCTCCAGCGAC-CCATTCACAAGAGCGT-TGCTA 414
consensus_4718#0      GAGCAGGAAAAGCCTGCACCACACATTCCACATCGATGTCGTAATCGAGCGCCTGCGCTA 570
                       *   *  *   * **  * *  * ***  ** ***   * *   * ** ** *  ****

consensus_4718#1      GCAGCAGTGTGGTCACAACGATAA--GTCATATGGCACAAGTNAGCGACTTTCCTAGTCG 636
consensus_4718#2      GCAGCAGTGTGGTCACAACGATAA--G-CATATGGC-CAAGTA--CGACTTTCCTAGTCG 468
consensus_4718#0      CCTTCGGNCGTGGCACACGGATAACCGGCGCAAACTCCACCTCGAGCGTGATCGTTTTCG 630
                       *  * *    * ****  *****  * *  *     **  *         ** *  ***

consensus_4718#1      AGTTCTNATCGCCTGTCCGATT--CTGCC-TGA--------------------------- 666
consensus_4718#2      AGGTGCCATCGTTGGTCCACTT--CAGTC-CAGAATAGTTAATGTTTGGAACGTTTTGTT 525
consensus_4718#0      TGTCCGCACGGNCCACCCCGTTGTCCGCCGTGCAATAGTACGTGCCACGGTCCTCCCG-- 688
                       *     *  *     **  **  * * *                               

consensus_4718#1      -------------------------------------------------
consensus_4718#2      CAAACAGGTTTAGTCGAGCCTCGGCTTGCCCAACCTTGTTGGTCGCCTT 574
consensus_4718#0      -------------------------------------------------