These datas are free for academic use only, please contact me for any other use. Anopheles gambiae see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_4720#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 735 fasta sequence [GGCAGAATCGGCACGNTGGCAGATAGCACGCGATCTATGGGTTCGAGCAGTTTTCGAGCAGTTTGGAAGTACACGGATACATCACCATACAATCAGCATTCGTGTCTAAACAAAAAGAAATCATATTTAACTAATCAATCGACCAGAAGTTTAACTAACTAACGGACGAAGGCTCCATTGCCCGACGAATGAATGAATTTTTAAATGTGCCACTGGCGCGCTCTTTAAACCGTTCATTCGGCACCGGTTTGACTTTTACAGAATATCAGATTTCAGCAGCAGTAGCGCTGCAGTTAGCAGACACGGGATGGAGTTGGACGGTACAGTAAGATACATACATTGGACTCAAAATATTGTTATCTCTTTACAAGCAAAAGGGTACAAACAAAACCACATACGCAGACACACATAAACGCACGCCGATTAGAGCAGTTACTGCAGGAAAAATATTAAATGTGATCGAGTATTAACGGAAACAGGCCGTCACAGCTGTAGCCGGTGTTGGTTTCAGTTATGTATTGTGTGTGTGTGTGTGTACTAGTGTGTGTATTGTGTTGCAGAAAGCTGGGTTAAAAGCGATAGGAATGAGAACGAGGGAGGCGACACAGACAGGGTTACAAAAAAGGGGTCCTATTTAAAACCAAAACACTACTAAAAGCATCCGCTGAAGTNAACTCGTAAGCTAAACGTGGTAACAGAAAATACAAANAGTTCCAAAACTGGCGGGAAACTAAA] [+] EMBL BX467961 [GGCAGAATCGGCACGNTGGCAGATAGCACGCGATCTATGGGTTCGAGCAGTTTTCGAGCAGTTTGGAAGTACACGGATACATCACCATACAATCAGCATTCGTGTCTAAACAAAAAGAAATCATATTTAACTAATCAATCGACCAGAAGTTTAACTAACTAACGGACGAAGGCTCCATTGCCCGACGAATGAATGAATTTTTAAATGTGCCACTGGCGCGCTCTTTAAACCGTTCATTCGGCACCGGTTTGACTTTTACAGAATATCAGATTTCAGCAGCAGTAGCGCTGCAGTTAGCAGACACGGGATGGAGTTGGACGGTACAGTAAGATACATACATTGGACTCAAAATATTGTTATCTCTTTACAAGCAAAAGGGTACAAACAAAACCACATACGCAGACACACATAAACGCACGCCGATTAGAGCAGTTACTGCAGGAAAAATATTAAATGTGATCGAGTATTAACGGAAACAGGCCGTCACAGCTGTAGCCGGTGTTGGTTTCAGTTATGTATTGTGTGTGTGTGTGTGTACTAGTGTGTGTATTGTGTTGCAGAAAGCTGGGTTAAAAGCGATAGGAATGAGAACGAGGGAGGCGACACAGACAGGGTTACAAAAAAGGGGTCCTATTTAAAACCAAAACACTACTAAAAGCATCCGCTGAAGTNAACTCGTAAGCTAAACGTGGTAACAGAAAATACAAANAGTTCCAAAACTGGCGGGAAACTAAA] consensusID : consensus_4720#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 2 consensus length = 525 fasta sequence [TGTAGTGTCGGTAGTGGCATCCAATGCCGCCATGTTGGCGCTTTACCATTGCCGAGCAGTTCAAGCGCAGGATTTTTACATCGCGCAGGGGAGTAGTGGCCTGAGGAAGAGCGGTGCCCGGGTGGTTGTTAAATTGTAATAGTAGTAATTGTTGTGGTCGTAACACAATCGCAATGCTATCGCAACTGTGCGCTGTGTCAGAAAAAAAAGCAATAGGACCAACCCCTCCCCCCTTCCCCAAGCCCTGGTTCCTCAAAAATCCATGGTACTCCCTGGTAAGCAGGATGGGGAAAAAGTATCTAAAAATAAAAGGAAGAATTATTGCAGAAATACTCACCAATCAAACTAAACAGATTAGCACGCGATCCTATGGGTTTCGAGCAGTTTTCGAGCAGTTTGGAAGTACACGGATACATCACATACAATCAGCATTCGTGTCTAAACAAAAAGAAATCATATTTAACTAATCAATCGACCAGAAGTTTAACTAACTAACGGACGAAGGCTCCATTGCCCGACGAATGA] [+] EMBL BX613951 [TGTAGTGTCGGTAGTGGCATCCAATGCCGCCATGTTGGCGCTTTACCATTGCCGAGCAGTTCAAGCGCAGGATTTTTACATCGCGCAGGGGAGTAGTGGCCTGAGGAAGAGCGGTGCCCGGGTGGTTGTTAAATTGTAATAGTAGTAATTGTTGTGGTCGTAACACAATCGCAATGCTATCGCAACTGTGCGCTGTGTCAGAAAAAAAAGCAATAGGACCAACCCCTCCCCCCTTCCCCAAGCCCTGGTTCCTCAAAAATCCATGGTACTCCCTGGTAAGCAGGATGGGGAAAAAGTATCTAAAAATAAAAGGAAGAATTATTGCAGAAATACTCACCAATCAAACTAAACAGATTAGCACGCGATCCTATGGGTTTCGAGCAGTTTTC ] [+] EMBL BX609609 [ GTGGTTGTTAAATTGTAATAGTAGTAATTGTTGTGGTCGTAACACAATCGCAATGCTATCGCAACTGTGCGCTGTGTCAGAAAAAAAAGCAATAGGACCAACCCCTCCCCCCTTCCCCAAGCCCTGGTTCCTCAAAAATCCATGGTACTCCCTGGTAAGCAGGATGGGGAAAAAGTATCTAAAAATAAAAGGAAGAATTATTGCAGAAATACTCACCAATCAAACTAAACAGATTAGCACGCGATCCTATGGGTTTCGAGCAGTTTTCGAGCAGTTTGGAAGTACACGGATACATCACATACAATCAGCATTCGTGTCTAAACAAAAAGAAATCATATTTAACTAATCAATCGACCAGAAGTTTAACTAACTAACGGACGAAGGCTCCATTGCCCGACGAATGA] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_4720#0 GGCAGAATCGGCACGNTGGCAGATAGCACGCGATCTATGGGTTCGAGCAGTTTTCGAGCA 60 consensus_4720#1 ------------------------------------------------------------ consensus_4720#0 GTTTGGAAGTACACGGATACATCACCATACAATCAGCATTCGTGTCTAAACAAAAAGAAA 120 consensus_4720#1 -------------------------TGTAGTGTCGGTAGTGGCATCCA------ATGCCG 29 ** ** * * * * ** * * * consensus_4720#0 TCATATTTA-ACTAATCAATCGACCAGAAGTTTAACTAACTAACGGACGAAGGCTCCATT 179 consensus_4720#1 CCATGTTGGCGCTTTACCATTGCCGAGCAGTTCA-------AGCGCAGGATTTTTACATC 82 *** ** ** * ** * * ** **** * * ** * ** * *** consensus_4720#0 GCCCGACGAATGAATGAATTTTTAAAT-GTGCCACTGGCGCGCTCTTTAAACCGTT-CAT 237 consensus_4720#1 GCGCAGGGGAGTAGTGGCCTGAGGAAGAGCGGTGCCCGGGTGGTTGTTAAATTGTAATAG 142 ** * * * * ** * ** * * * * * * * ***** ** * consensus_4720#0 TCGGCACCGGTTTGACTTTTACAGAATATCAG-ATTTCAGCAGCAGTAGCGCTGCAGTTA 296 consensus_4720#1 TAGTAATTGTTGTGGTCGTAACACAATCGCAATGCTATCGCAACTGT-GCGCTGTGTCAG 201 * * * * * ** * *** *** ** * *** * ** ****** consensus_4720#0 GCAGACACGGGATGGAGTTGGACGGTACAGTAAGATACATACATTGGA--CTCAAAATAT 354 consensus_4720#1 AAAAAAAAGCAATAGGACCAACCCCTCCCCCCTTCCCCAAGCCCTGGTTCCTCAAAAATC 261 * * * * ** * * * * ** * *** ******* consensus_4720#0 TGT--TATCTCTTTACAAGCAAAAGGGTACAAACAAAACCACATACGCAGACACACATAA 412 consensus_4720#1 CATGGTACTCCCTGGTAAGCAGGATGGGGAAAAAGTATCTAAAAATAAAAGGAAGAATTA 321 * ** * * ***** * ** *** * * * * * * * ** * consensus_4720#0 ACGCACGCCGATTAGAGCAGTTACTGCAGGAAAAATATTAAATGTGATCGAGTATTAACG 472 consensus_4720#1 TTGCAGAAATACTC-ACCAATCAAACTAAACAGATTAGCACGCGATCCTATGGGTTTCGA 380 *** * * * ** * * * * * ** * * * ** consensus_4720#0 GAAACAGGCCGTCACAGCTGTAGCCGGTGTTGGTTTCAGTTATGTATTGTGTGTGTGTGT 532 consensus_4720#1 GCAGTTTTCGAGCAGTTTGGAAGTACACGGATACATCA--CATACAATCAGCATTCGTGT 438 * * * ** * ** * *** ** * * * * **** consensus_4720#0 GTGTACTAGTGTGTGTATTGTGTTGCAGAAAGCTGGGTTAAAAGCGATAGGAATGAGAAC 592 consensus_4720#1 CTAAACAAAAAGAAATCATATTTAACTAATCAATCGACCAGAAGTTTAACTAACTAACG- 497 * ** * * * * * * * * * * *** * ** * consensus_4720#0 GAGGGAGGCGACACAGACAGGGTTACAAAAAAGGGGTCCTATTTAAAACCAAAACACTAC 652 consensus_4720#1 GACGAAGGCTCCATTGCCCGACGAATGA-------------------------------- 525 ** * **** ** * * * * * consensus_4720#0 TAAAAGCATCCGCTGAAGTNAACTCGTAAGCTAAACGTGGTAACAGAAAATACAAANAGT 712 consensus_4720#1 ------------------------------------------------------------ consensus_4720#0 TCCAAAACTGGCGGGAAACTAAA 735 consensus_4720#1 ----------------------- |
Copyright Wed Dec 3 12:11:56 CET 2003 Hubert Wassner (hubert.wassner@noos.fr) | ||||