cluster # 473

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Anopheles gambiae
cluster # 473 cluster # 473 Sequences # 2 consensus # 2

see consensus multiple alignment with clustalw

Direct access to contigs :

consensus_473#0 length = 914 sequences # 1

consensus_473#1 length = 645 sequences # 1

consensusID : consensus_473#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 914
fasta sequence

                              [GCCAGAATCGGCACGATGGGACAATCTGCTGCGGTGTTTATAATTACTATCATTTCCTTGTAATTGTATTTGGGCAATCCAAGGAAATGCTCAACAAAACCGCCCCAGGTCAGGCAGTTTGCTCTGCAAACATTACTATAAAGCGCCGAAAACAAAACAAAAAAATCCGTAAACCTCATGACCTCATGACCTTCTGATCGTGTGAAGATCAATTTACATTGCGACCGGAGAACGTTCCACTATTGCTTCCTTCCGACGCCGAGCTGGTGGAATTCGGAATTGGATACTTGCTGTACGTGGAATGAAAAGAAAGGGACATACTTATCACTCTTGGTTTTATTGAACATTGACGATGGAGGAGGATGTAGACGAGACCTGGTAGTGTAGAGGAACAAAACGCGGAAACCTGTAACAGAACATGATTTGTTTTGTGAAGGTAGTATTATTTTCTATTAAACTGATGATTACAAATACAATGTTTACTGTACGTACGTCCCGATACTACTGATGAGAATGAGGTAAAACACAGGGGCATTTGCACTTTGCAATGCCTGTGTGTATGGTCGCAAACTGTTTGATTGTATAATGGGTTTACTAGGAAAAAGCTGAGTATACACCGTGGACATCTAACCATCATATGCAAGCATCCAGTAAGGACTCATTAAGAACTGACTAACGAAATAGTGTTANAACGAAAGGGTGAATTGTGCACGCCGAGCAGCAGGCAGGCAAGTGACTAAACAAGAAAAGAGNACNAGACACAGACANAACAGNCATGTTTGGCCGGGCCCGCAANCTTTATTCCCCTTTTAATGAGGGCTTAACTTCGNAGCTTTGGGCAACTGGCCGGACGGTTTACACAACGTTCGTGACTGGGGNAAACACTTGGGCGTTTCCCNAATTAAATCGCCTTT]

[+] EMBL BX468445             [GCCAGAATCGGCACGATGGGACAATCTGCTGCGGTGTTTATAATTACTATCATTTCCTTGTAATTGTATTTGGGCAATCCAAGGAAATGCTCAACAAAACCGCCCCAGGTCAGGCAGTTTGCTCTGCAAACATTACTATAAAGCGCCGAAAACAAAACAAAAAAATCCGTAAACCTCATGACCTCATGACCTTCTGATCGTGTGAAGATCAATTTACATTGCGACCGGAGAACGTTCCACTATTGCTTCCTTCCGACGCCGAGCTGGTGGAATTCGGAATTGGATACTTGCTGTACGTGGAATGAAAAGAAAGGGACATACTTATCACTCTTGGTTTTATTGAACATTGACGATGGAGGAGGATGTAGACGAGACCTGGTAGTGTAGAGGAACAAAACGCGGAAACCTGTAACAGAACATGATTTGTTTTGTGAAGGTAGTATTATTTTCTATTAAACTGATGATTACAAATACAATGTTTACTGTACGTACGTCCCGATACTACTGATGAGAATGAGGTAAAACACAGGGGCATTTGCACTTTGCAATGCCTGTGTGTATGGTCGCAAACTGTTTGATTGTATAATGGGTTTACTAGGAAAAAGCTGAGTATACACCGTGGACATCTAACCATCATATGCAAGCATCCAGTAAGGACTCATTAAGAACTGACTAACGAAATAGTGTTANAACGAAAGGGTGAATTGTGCACGCCGAGCAGCAGGCAGGCAAGTGACTAAACAAGAAAAGAGNACNAGACACAGACANAACAGNCATGTTTGGCCGGGCCCGCAANCTTTATTCCCCTTTTAATGAGGGCTTAACTTCGNAGCTTTGGGCAACTGGCCGGACGGTTTACACAACGTTCGTGACTGGGGNAAACACTTGGGCGTTTCCCNAATTAAATCGCCTTT]




>consensus_473#0
GCCAGAATCGGCACGATGGGACAATCTGCTGCGGTGTTTATAATTACTATCATTTCCTTG
TAATTGTATTTGGGCAATCCAAGGAAATGCTCAACAAAACCGCCCCAGGTCAGGCAGTTT
GCTCTGCAAACATTACTATAAAGCGCCGAAAACAAAACAAAAAAATCCGTAAACCTCATG
ACCTCATGACCTTCTGATCGTGTGAAGATCAATTTACATTGCGACCGGAGAACGTTCCAC
TATTGCTTCCTTCCGACGCCGAGCTGGTGGAATTCGGAATTGGATACTTGCTGTACGTGG
AATGAAAAGAAAGGGACATACTTATCACTCTTGGTTTTATTGAACATTGACGATGGAGGA
GGATGTAGACGAGACCTGGTAGTGTAGAGGAACAAAACGCGGAAACCTGTAACAGAACAT
GATTTGTTTTGTGAAGGTAGTATTATTTTCTATTAAACTGATGATTACAAATACAATGTT
TACTGTACGTACGTCCCGATACTACTGATGAGAATGAGGTAAAACACAGGGGCATTTGCA
CTTTGCAATGCCTGTGTGTATGGTCGCAAACTGTTTGATTGTATAATGGGTTTACTAGGA
AAAAGCTGAGTATACACCGTGGACATCTAACCATCATATGCAAGCATCCAGTAAGGACTC
ATTAAGAACTGACTAACGAAATAGTGTTANAACGAAAGGGTGAATTGTGCACGCCGAGCA
GCAGGCAGGCAAGTGACTAAACAAGAAAAGAGNACNAGACACAGACANAACAGNCATGTT
TGGCCGGGCCCGCAANCTTTATTCCCCTTTTAATGAGGGCTTAACTTCGNAGCTTTGGGC
AACTGGCCGGACGGTTTACACAACGTTCGTGACTGGGGNAAACACTTGGGCGTTTCCCNA
ATTAAATCGCCTTT

consensusID : consensus_473#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 645
fasta sequence

                              [AAAAAGCTGAGTATACACCGTGGACATCTAACCATCATATGCAAGCATCAATAAGACTCATTAAAACTGACTAAGATTAGTGTTAAACGAAAGGTGAATTGTGCACGCCAAGCAGCAGCAGCAAGTGACTAAACAAAAAACAATGAATGAATGGTGCGCACACCATGTGGTGATGGAAATGTAAGAGGAAATTGGGGCAAAAAAATGGAACAAACTAGCGTAAAGTACATATACCTGCACACAAACAAACTAACTCATCTTATACCGTAACAATCGTACAGCATAAAAATGATGATTCAAATGGAATAGAGACACGATAGATGAGTCACTGCAAATTGTTAGTGGAGTAGAGAGAAGTTAAAATTATTAGTACGTGGTAAGACAAGCAAGAACGATCTGGTGGGGAAAAGCGAAACCGCAAAGCAGGAAGGAACGGCGTGAATGAGTCGTGTGTGTGTGTGTGTGTGCGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGGCAAAGACTGTATCAGAAACAGTGCAGGAACAGGTGNATNAATGTGTGTGTGGGAACACGGTNNTNCGAACNGTGGCATTGCGCTAACAACACNNNNATATATNATTATNTANNTNTATCACACAGGANATANNAAAAGTGT]

[+] EMBL CF541925             [AAAAAGCTGAGTATACACCGTGGACATCTAACCATCATATGCAAGCATCAATAAGACTCATTAAAACTGACTAAGATTAGTGTTAAACGAAAGGTGAATTGTGCACGCCAAGCAGCAGCAGCAAGTGACTAAACAAAAAACAATGAATGAATGGTGCGCACACCATGTGGTGATGGAAATGTAAGAGGAAATTGGGGCAAAAAAATGGAACAAACTAGCGTAAAGTACATATACCTGCACACAAACAAACTAACTCATCTTATACCGTAACAATCGTACAGCATAAAAATGATGATTCAAATGGAATAGAGACACGATAGATGAGTCACTGCAAATTGTTAGTGGAGTAGAGAGAAGTTAAAATTATTAGTACGTGGTAAGACAAGCAAGAACGATCTGGTGGGGAAAAGCGAAACCGCAAAGCAGGAAGGAACGGCGTGAATGAGTCGTGTGTGTGTGTGTGTGTGCGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGGCAAAGACTGTATCAGAAACAGTGCAGGAACAGGTGNATNAATGTGTGTGTGGGAACACGGTNNTNCGAACNGTGGCATTGCGCTAACAACACNNNNATATATNATTATNTANNTNTATCACACAGGANATANNAAAAGTGT]




>consensus_473#1
AAAAAGCTGAGTATACACCGTGGACATCTAACCATCATATGCAAGCATCAATAAGACTCA
TTAAAACTGACTAAGATTAGTGTTAAACGAAAGGTGAATTGTGCACGCCAAGCAGCAGCA
GCAAGTGACTAAACAAAAAACAATGAATGAATGGTGCGCACACCATGTGGTGATGGAAAT
GTAAGAGGAAATTGGGGCAAAAAAATGGAACAAACTAGCGTAAAGTACATATACCTGCAC
ACAAACAAACTAACTCATCTTATACCGTAACAATCGTACAGCATAAAAATGATGATTCAA
ATGGAATAGAGACACGATAGATGAGTCACTGCAAATTGTTAGTGGAGTAGAGAGAAGTTA
AAATTATTAGTACGTGGTAAGACAAGCAAGAACGATCTGGTGGGGAAAAGCGAAACCGCA
AAGCAGGAAGGAACGGCGTGAATGAGTCGTGTGTGTGTGTGTGTGTGCGTGTGTGTGTGT
GTGTGTGTGTGTGTGTGTGTGTGGCAAAGACTGTATCAGAAACAGTGCAGGAACAGGTGN
ATNAATGTGTGTGTGGGAACACGGTNNTNCGAACNGTGGCATTGCGCTAACAACACNNNN
ATATATNATTATNTANNTNTATCACACAGGANATANNAAAAGTGT

consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_473#0      GCCAGAATCGGCACGATGGGACAATCTGCTGCGGTGTTTATAATTACTATCATTTCCTTG 60
consensus_473#1      ------------------------------------------------------------
                                                                                 

consensus_473#0      TAATTGTATTTGGGCAATCCAAGGAAATGCTCAACAAAACCGCCCCAGGTCAGGCAGTTT 120
consensus_473#1      ------------------------------------------------------------
                                                                                 

consensus_473#0      GCTCTGCAAACATTACTATAAAGCGCCGAAAACAAAACAAAAAAATCCGTAAACCTCATG 180
consensus_473#1      --------------------------------------AAAAAGCTGAGTATACACCGTG 22
                                                           *****  *  *** **  * **

consensus_473#0      ACCTCATGACCTTCTGATCGTGTGAAGATCAATTTACATTGCGACCGGAGAACGTTCCAC 240
consensus_473#1      GACATCTAACCATCATATGCAAGCATCAATAAGACTCATTAAAACTGACTAAGATT--AG 80
                       *   * *** **  **      *  *  **    ****   ** *   **  **  * 

consensus_473#0      TATTGCTTCCTTCCGACGCCGAGCTGGTGGAATTCGGAATTGGATACTTGCTGTACGTGG 300
consensus_473#1      TGTTAAACGAAAGGTGAATTGTGCACGCCAAG--CAGCAGCAGCAAGTGACTAAACAAAA 138
                     * **                * **  *   *   * * *   *  * *  **  **    

consensus_473#0      AATGAAAAGAAAGGGACATACTTATCAC-TCTTGGTTTTATTGAACATTGACGATGGAGG 359
consensus_473#1      AACAATGAATGAATGGTGCGCACACCATGTGGTGATGGAAATGTAAGAGGAAATTGGGGC 198
                     **  *  *   *  *     *  * **  *  ** *   * ** *    **   *** * 

consensus_473#0      AGGATGTAGACGAGACCTGGTAGTGTAGAGGAACAAAACGCGGAAACCTGTAACAGAACA 419
consensus_473#1      AAAA---AAATGGAACAAACTAGCGTAAAGTACATATACCTGCACACAAACAAACTAACT 255
                     *  *   * * *  **    *** *** ** *   * **  * * **    **   *** 

consensus_473#0      TGATTTGTTTTGTGAAGGTAGTATTATTTTCTATTAAACTGATGATTACAAATACAATGT 479
consensus_473#1      CATCTTATACCGTAACAATCGTACAGC-----ATAAAAATGATGATT-CAAATGGAATAG 309
                         ** *   ** *   * ***         ** *** ******** *****  ***  

consensus_473#0      TTACTGTACGTACGTCCCGATACTACTGATGAGAATGAGGTAAAACACAGGGGCATTTGC 539
consensus_473#1      AGACACGATAGATGAGTCACTGCAAAT--TGTTAGTGGAGTAGA------GAGAAGTTAA 361
                       **   *   * *   *  * * * *  **  * **  *** *      * * * **  

consensus_473#0      ACTTTGCAATGCCTGTGTGTATGGTCGCAAACTGTTTGATTGTATAATGGGTTTACTAGG 599
consensus_473#1      AATTATTAGTACGTGGTAAGACAAGCAAGAACGATCTGGTGGGGAAAAGCGAA-ACCGCA 420
                     * **   * * * **     *    *   ***  * ** * *   ** * *   **    

consensus_473#0      AAAAAGCTGAGTATACACCGTGGACATCTAACCATCATATGCAAGCATCCAGTAAGGACT 659
consensus_473#1      AAGCAG--GAAGGAACGGCGTGAATGAGTCGTGTGTGTGTGTGTGTGTGC-GTGTGTGTG 477
                     **  **  **    **  **** *    *        * **   *  * * **  *    

consensus_473#0      CATTAAGAACTGACTAACGAAATAGTGTTANAACGAAAGGGTGAATTGTGCACGCCGAGC 719
consensus_473#1      TGTGTGTGTGTGTGTGTGTGTGTGTGGCAAAGACTGTATCAGAAACAGTGCAGG------ 531
                       *       **  *       *   *  *  **   *     **  ***** *      

consensus_473#0      AGCAGGCAGGCAAGTGACTAAACAAGAAAAGAGNACNAGACACAGACANAACAGNCATGT 779
consensus_473#1      AACAGGTGNATNAATGTGTGTGTGGGAACACGGTNNTNCGAACNGTGGCATTGCGCTAAC 591
                     * ****      * **  *      *** *  *        ** *    *     *    

consensus_473#0      TTGGCCGGGCCCGCAANCTTTATTCCCCTTTTAATGAGGGCTTAACTTCGNAGCTTTGGG 839
consensus_473#1      AACACNNNNATATATNATTATNTANNTNTATCACACAGGANATANNAAAAGTGT------ 645
                         *             * * *     * * *   ***   **        *       

consensus_473#0      CAACTGGCCGGACGGTTTACACAACGTTCGTGACTGGGGNAAACACTTGGGCGTTTCCCN 899
consensus_473#1      ------------------------------------------------------------
                                                                                 

consensus_473#0      AATTAAATCGCCTTT 914
consensus_473#1      ---------------