These datas are free for academic use only, please contact me for any other use. Anopheles gambiae see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_4731#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 690 fasta sequence [CAAAACCCGATAAACACATTAATGTTGTTACTTTTTAGCATAACACTTCCATAAAGGGAGCTGTTATACACGACCGTTAGCTTCGTGAAATGGAAGTTGGTATAATAATAACAACAAAAACAGAATTATCCTTTGTTTGTGTCCACATGCAAAGACAGGACAGGATGTATGTGAAAAGAGGAGAAGGTCATTTAATGTTCTCTACCACCCCATCTATGCTTTTCACAACAGACAATTGGAGAAGGAACCCGGTGTGTGTGTGTGTACCAGAGTATTGGCGACACATTAGCGGATGAATAATTTCGATTCGGTGGCGGCTTCAGGTAAAAATGTCTCAAACTGGCAAAACACAGTGGCACGATACAGTGAAACCTCTCACTTTTCGCACTAGCAAGCAAATCTCAAGTCGCGTTTGTGGCGAAATATTGTTCCTCTGCTTCGAATCCTGCAACGGGCTGCTGTAGCGAGCCACACACGCAGTAGAGCAAGCACCAGGCACAGTTATGACTCAGACAGCATTATGCTAGCGCGAATAGATGAGGAAGGAGTAGTAAACACGCGCCCGCCCGATGAAGAATTCGAACGACAGTACTCTCAAGAGTAGATGAGATGACGGCGAAGACCCCGCGCAATCATCGGCCGGAAGAAACAGAGAGAGAGAGAGAGAGCGAGAGAGGATAATAGAGTATT] [+] EMBL BX615874 [CAAAACCCGATAAACACATTAATGTTGTTACTTTTTAGCATAACACTTCCATAAAGGGAGCTGTTATACACGACCGTTAGCTTCGTGAAATGGAAGTTGGTATAATAATAACAACAAAAACAGAATTATCCTTTGTTTGTGTCCACATGCAAAGACAGGACAGGATGTATGTGAAAAGAGGAGAAGGTCATTTAATGTTCTCTACCACCCCATCTATGCTTTTCACAACAGACAATTGGAGAAGGAACCCGGTGTGTGTGTGTGTACCAGAGTATTGGCGACACATTAGCGGATGAATAATTTCGATTCGGTGGCGGCTTCAGGTAAAAATGTCTCAAACTGGCAAAACACAGTGGCACGATACAGTGAAACCTCTCACTTTTCGCACTAGCAAGCAAATCTCAAGTCGCGTTTGTGGCGAAATATTGTTCCTCTGCTTCGAATCCTGCAACGGGCTGCTGTAGCGAGCCACACACGCAGTAGAGCAAGCACCAGGCACAGTTATGACTCAGACAGCATTATGCTAGCGCGAATAGATGAGGAAGGAGTAGTAAACACGCGCCCGCCCGATGAAGAATTCGAACGACAGTACTCTCAAGAGTAGATGAGATGACGGCGAAGACCCCGCGCAATCATCGGCCGGAAGAAACAGAGAGAGAGAGAGAGAGCGAGAGAGGATAATAGAGTATT] consensusID : consensus_4731#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 628 fasta sequence [CGCGTCCGCTTATGAAACATTTACTTAATATGAACGTAACTGTGTATGCAAAAGAGGGGGAAGCTAGGAAGCGCAACCTTAAGCGGAGGTGTTGCAACGTAGTTACACGGCACAGGTGCAAGCGTGGAGTGGAGCAGATGATAGGAGATGTTCTGTGGAAGTATGAACACATAATAGTAACAAACAAAATCAAACAAACAAACGAATTATGTCATCAATTTTATTTTATTATCGCTATTTCCGGGTCTACGTACGGACTTGGCGTGGTGTTGTGGATCGTTGCGTTGGTTTGTCGCTTGCCCGCAAAACCCGATAAACACATTACATTATATTTTTCCAATCGAATGAATACATGTTTAATGTAAGTTTTTGTTTTCTCCTATGTTTAGTCTGCCTTTTGCGCCTAGCTGGACGTGAAAGCTTTAAGGCAAAATTATACAATGCTAACGCTAACGGATCGCCGCAAAACCACGCGTACAAACGGTTTGGTTTATGGTACATTAATGTTGTTACTTTTTAGTATAACACTTCCACAAAGGGAGCTGTTATACACGACCGTTAGCTTCGTGAATTGGAAGTTGGTATAATAACATCAACAAAAACAGAATTATCCTTTGTTTGTGTCCAC] [+] EMBL BM599954 [CGCGTCCGCTTATGAAACATTTACTTAATATGAACGTAACTGTGTATGCAAAAGAGGGGGAAGCTAGGAAGCGCAACCTTAAGCGGAGGTGTTGCAACGTAGTTACACGGCACAGGTGCAAGCGTGGAGTGGAGCAGATGATAGGAGATGTTCTGTGGAAGTATGAACACATAATAGTAACAAACAAAATCAAACAAACAAACGAATTATGTCATCAATTTTATTTTATTATCGCTATTTCCGGGTCTACGTACGGACTTGGCGTGGTGTTGTGGATCGTTGCGTTGGTTTGTCGCTTGCCCGCAAAACCCGATAAACACATTACATTATATTTTTCCAATCGAATGAATACATGTTTAATGTAAGTTTTTGTTTTCTCCTATGTTTAGTCTGCCTTTTGCGCCTAGCTGGACGTGAAAGCTTTAAGGCAAAATTATACAATGCTAACGCTAACGGATCGCCGCAAAACCACGCGTACAAACGGTTTGGTTTATGGTACATTAATGTTGTTACTTTTTAGTATAACACTTCCACAAAGGGAGCTGTTATACACGACCGTTAGCTTCGTGAATTGGAAGTTGGTATAATAACATCAACAAAAACAGAATTATCCTTTGTTTGTGTCCAC] consensusID : consensus_4731#2 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 610 fasta sequence [AATCGCCCCGAGGACAAATCAAACAAACAACAAATTATGTCATCAATTTTATTTTATTATCGCTATTTCCGGGTCTACGTACGGACTTGGCGTGGTGTTGTGGATCGTTGCGTTGGTTTGTCGCTTGCCCGCAAAACCCGATAAACACATTACATTATATTTTTCCAATCGAATGAATACACGTTTAATGTAAGTTTTGTTTTCTCCTATGTTTAGTCTGCCTATTGCCAAGCTGAACGTGAAAGCTTTAAGGCAAAATTATACAATGCTAGCGCTAACGGATCGCCCTAAAACCACGCGTACAAACGCTTTGGTTTATGGTACATTAATGTTGTTACTTTTTAGCATAACACTTCCATAAAGGGAGCTGTTATACACGACCGTTAGCTTCGTGAAATGGAAGTTGGTATAATAATAACAACAAAAACAGAATTATCCTTTGTTGTGTCCACATGCAAAGACAGGACAGGATGTATGTGAACAAGAGGAGAAGGTCATTTAATGTTCTCTACCACCCATCTATGCTCTTTCACAACAGACAATGGAGAAGGAACCCGGTGTGTGTGTGTGTACCAGAGTATTGGCGGACACATTAGCGGACTGAATATTC] [+] EMBL AL933060 [AATCGCCCCGAGGACAAATCAAACAAACAACAAATTATGTCATCAATTTTATTTTATTATCGCTATTTCCGGGTCTACGTACGGACTTGGCGTGGTGTTGTGGATCGTTGCGTTGGTTTGTCGCTTGCCCGCAAAACCCGATAAACACATTACATTATATTTTTCCAATCGAATGAATACACGTTTAATGTAAGTTTTGTTTTCTCCTATGTTTAGTCTGCCTATTGCCAAGCTGAACGTGAAAGCTTTAAGGCAAAATTATACAATGCTAGCGCTAACGGATCGCCCTAAAACCACGCGTACAAACGCTTTGGTTTATGGTACATTAATGTTGTTACTTTTTAGCATAACACTTCCATAAAGGGAGCTGTTATACACGACCGTTAGCTTCGTGAAATGGAAGTTGGTATAATAATAACAACAAAAACAGAATTATCCTTTGTTGTGTCCACATGCAAAGACAGGACAGGATGTATGTGAACAAGAGGAGAAGGTCATTTAATGTTCTCTACCACCCATCTATGCTCTTTCACAACAGACAATGGAGAAGGAACCCGGTGTGTGTGTGTGTACCAGAGTATTGGCGGACACATTAGCGGACTGAATATTC] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_4731#1 CGCGTCCGCTTATGAAACATTTACTTAATATGAACGTAACTGTGTATGCAAAAGAGGGGG 60 consensus_4731#2 ------------------------------------------------------------ consensus_4731#0 ------------CAAAACCCGATAAACACATTAATGTTGTTACTTTTT---AGCATAACA 45 consensus_4731#1 AAGCTAGGAAGCGCAACCTTAAGCGGAGGTGTTGCAACGTAGTTACACGGCACAGGTGCA 120 consensus_4731#2 ------------------------------------------------------------ consensus_4731#0 CTTCCATAAAGGGAGCTGTTATACACGACCGTT-------AGCTTCGTGAAATGGAAGTT 98 consensus_4731#1 AGCGTGGAGTGGAGCAGATGATAGGAGATGTTCTGTGGAAGTATGAACACATAATAGTAA 180 consensus_4731#2 ----------------------------------------------------AATCGCCC 8 consensus_4731#0 GGTATAATAATAACAACAAAAACAGAATTATCCTTTGTTTGTGTCCACATGCAAAGACA- 157 ** consensus_4731#1 CAAACA-AAATCAAACAAACAAACGAATTATGTCATCAATTTTATTTTATTATCGCTATT 239 consensus_4731#2 CGAGGACAAATCAAACAAACAA-CAAATTATGTCATCAATTTTATTTTATTATCGCTATT 67 consensus_4731#0 -GGACAGGATGTATGTGAA-AAGAGGAGAAGGTCATTTAATGTTCTCTACCACC-CCATC 214 * * * ** ** * * ***** * * * * ** * * * ** consensus_4731#1 TCCGGGTCTACGTACGGAC--TTGGCGTGGTGTTGTGGATCGT-TGCGTTGGTTTGTCGC 296 consensus_4731#2 TCCGGGTCTACGTACGGAC--TTGGCGTGGTGTTGTGGATCGT-TGCGTTGGTTTGTCGC 124 consensus_4731#0 TATGCTTTTCACAACAGACAATTGGAGAAGGAACCCGGTGTGTGTGTGTGTACCAGAGTA 274 * * * * ** *** **** * * ** ** ** ** * consensus_4731#1 TTGCCCGCAAA--ACCCGATAAACACATTACATTATATTTTTCCAATCGAATGAATACAT 354 consensus_4731#2 TTGCCCGCAAA--ACCCGATAAACACATTACATTATATTTTTCCAATCGAATGAATACAC 182 consensus_4731#0 TTGGCGACACATTAGCGGATGAATA-ATTTCGATTCGGTGGCGGCTTCAGGTAAAAATGT 333 *** * ** * * * *** ** * *** * * * ** * ** * consensus_4731#1 GTTTAAT--GTAAGTTTTTGTTTTCTCCTATGTTTAG---TCTGCCTTTTGCGCCTAGC- 408 consensus_4731#2 GTTTAAT--GTAAGTTTT-GTTTTCTCCTATGTTTAG---TCTGCCTATTGC--CAAGC- 233 consensus_4731#0 CTCAAACTGGCAAAACACAGTGGCACGATACAGTGAAACCTCTCACTTTTCGCACTAGCA 393 * ** * ** ** ** * * *** ** ** * *** consensus_4731#1 --TGGACGTGAAAGC---TTTAAGGCAAAATTATA---CAATGCT---AACGCT--AACG 455 consensus_4731#2 --TGAACGTGAAAGC---TTTAAGGCAAAATTATA---CAATGCT---AGCGCT--AACG 280 consensus_4731#0 AGCAAATCTCAAGTCGCGTTTGTGGCGAAATATTGTTCCTCTGCTTCGAATCCTGCAACG 453 * * ** * *** *** **** * * **** * ** **** consensus_4731#1 GATCGCCGCAA--AACCACGCGTACAAACGGTTTGGTTTATGGTACATTAATGTTGTTAC 513 consensus_4731#2 GATCGCCCTAA--AACCACGCGTACAAACGCTTTGGTTTATGGTACATTAATGTTGTTAC 338 consensus_4731#0 GGCTGCTGTAGCGAGCCACACACGCAGTAGAGCAAGCACCAGGCACAGTTATGACTCAGA 513 * ** * * **** * ** * * ** *** * *** consensus_4731#1 T--TTTTAGTATAACACTTCCACA-AAGGGAGCTGTTATACACGACCGTTAGCTTCGTGA 570 consensus_4731#2 T--TTTTAGCATAACACTTCCATA-AAGGGAGCTGTTATACACGACCGTTAGCTTCGTGA 395 consensus_4731#0 CAGCATTATGCTAGCGCGAATAGATGAGGAAGGAGTAGTAAACACGCGCCCGCCCGATGA 573 *** ** * * * * *** ** ** ** ** ** ** *** consensus_4731#1 ATTGGAAGTTGGTATAATAACATCAACAAAAACAGAATTATCCTTTGTTTGTGTCCAC-- 628 consensus_4731#2 AATGGAAGTTGGTATAATAATAACAACAAAAACAGAATTATCCTTTGTT-GTGTCCACAT 454 consensus_4731#0 A----GAATTCGAACGACAGTACTCTCAAGAGTAGA-TGAGATGACGGCGAAGACCCCGC 628 * * ** * * * * * *** * *** * * * * ** * consensus_4731#1 ------------------------------------------------------------ consensus_4731#2 GCAAAGACAGGACAGGATGTATGTGAACAAGAGGAGAAGGTCATTTAATGTTCTCTACCA 514 consensus_4731#0 GCAATCATCGGCCGGAAGAAACAGAGAGAGAGAGAGAGAGCGAGAGAGGATAATAGAGTA 688 consensus_4731#1 ------------------------------------------------------------ consensus_4731#2 CCCATCTATGCTCTTTCACAACAGACAATGGAGAAGGAACCCGGTGTGTGTGTGTGTACC 574 consensus_4731#0 TT---------------------------------------------------------- 690 consensus_4731#1 ------------------------------------ consensus_4731#2 AGAGTATTGGCGGACACATTAGCGGACTGAATATTC 610 consensus_4731#0 ------------------------------------ |
Copyright Wed Dec 3 12:11:56 CET 2003 Hubert Wassner (hubert.wassner@noos.fr) | ||||