cluster # 4742

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Anopheles gambiae
cluster # 4742 cluster # 4742 Sequences # 3 consensus # 2

see consensus multiple alignment with clustalw

Direct access to contigs :

consensus_4742#0 length = 657 sequences # 2

consensus_4742#1 length = 553 sequences # 1

consensusID : consensus_4742#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 2
consensus length = 657
fasta sequence

                              [TCAAGCGCATCGAAATCCGTTGCATCCATTACGACCAACATCACGCAGGTGATTGAGTCGGGCATCGGTGTGCCCAATCCGGAGGAATTGGCCCGCCGTCAGGCGGAAGAAGAAGCTAAGCTAAAAGCGGAAGGCTACATTCGAGAAGAAAGCGAATCAAACCAAGGCACACAGTCGAGCGAACGGCCGCTGGATGATAGATTTGGATTCGATCAGCTCGTTTCCGGTGTGACACAGATTAGCAGCAAGGTGATCAGCGGTGGGTTGGACACGCTCGAGGGCATCGGAAAGAAAACGATGACCATTTTGCAGGAGAACGATCCCGGATTGTTGAACAAGCGCAAATTGCTCGGTTTGCAGCCGAACGACGGCGTGGTGTTAAGCCAGGTACTGCGCGAGGCCAAAGCCAAGACCGAGGAGCGCGAACGGAACCTGAAGCAAATCCAGAAGCATCAGTATAAAAAGAAACTTCACTTTGAAACGCTGTTCGACGATGACGACGGTTTAGTGCATCTGGAGGCACTGGAAATGCTGTCGAAGCAAGCGTCACTCAAGCTGGAATCACTGATGGCCCCGTTGACGGGGAAGGCGCTGGAGGAGCTTCAGGAAACGATGAGCGAGGTGAAGGAGCTGTGCGAACTGCCCGAAACGGACAAC]

[+] EMBL BX614119             [TCAAGCGCATCGAAATCCGTTGCATCCATTACGACCAACATCACGCAGGTGATTGAGTCGGGCATCGGTGTGCCCAATCCGGAGGAATTGGCCCGCCGTCAGGCGGAAGAAGAAGCTAAGCTAAAAGCGGAAGGCTACATTCGAGAAGAAAGCGAATCAAACCAAGGCACACAGTCGAGCGAACGGCCGCTGGATGATAGATTTGGATTCGATCAGCTCGTTTCCGGTGTGACACAGATTAGCAGCAAGGTGATCAGCGGTGGGTTGGACACGCTCGAGGGCATCGGAAAGAAAACGATGACCATTTTGCAGGAGAACGATCCCGGATTGTTGAACAAGCGCAAATTGCTCGGTTTGCAGCCGAACGACGGCGTGGTGTTAAGCCAGGTACTGCGCGAGGCCAAAGCCAAGACCGAGGAGCGCGAACGGAACCTGAAGCAAATCCAGAAGCATCAGTATAAAAAGAAACTTCACTTTGAAACGCTGTTCGACGATGACGACGGTTTAGTGCATCTGGAGGCACTGGAA                                                                                                                                 ]
[+] EMBL BX612040             [                                                                                                                                                 AAGAAAGCGAATCAAACCAAGGCACACAGTCGAGCGAACGGCCGCTGGATGATAGATTTGGATTCGATCAGCTCGTTTCCGGTGTGACACAGATTAGCAGCAAGGTGATCAGCGGTGGGTTGGACACGCTCGAGGGCATCGGAAAGAAAACGATGACCATTTTGCAGGAGAACGATCCCGGATTGTTGAACAAGCGCAAATTGCTCGGTTTGCAGCCGAACGACGGCGTGGTGTTAAGCCAGGTACTGCGCGAGGCCAAAGCCAAGACCGAGGAGCGCGAACGGAACCTGAAGCAAATCCAGAAGCATCAGTATAAAAAGAAACTTCACTTTGAAACGCTGTTCGACGATTACCACGGTTTAGTGCATCTGGAGGCACTGGAAATGCTGTCGAAGCAAGCGTCACTCAAGCTGGAATCACTGATGGCCCCGTTGACGGGGAAGGCGCTGGAGGAGCTTCAGGAAACGATGAGCGAGGTGAAGGAGCTGTGCGAACTGCCCGAAACGGACAAC]




>consensus_4742#0
TCAAGCGCATCGAAATCCGTTGCATCCATTACGACCAACATCACGCAGGTGATTGAGTCG
GGCATCGGTGTGCCCAATCCGGAGGAATTGGCCCGCCGTCAGGCGGAAGAAGAAGCTAAG
CTAAAAGCGGAAGGCTACATTCGAGAAGAAAGCGAATCAAACCAAGGCACACAGTCGAGC
GAACGGCCGCTGGATGATAGATTTGGATTCGATCAGCTCGTTTCCGGTGTGACACAGATT
AGCAGCAAGGTGATCAGCGGTGGGTTGGACACGCTCGAGGGCATCGGAAAGAAAACGATG
ACCATTTTGCAGGAGAACGATCCCGGATTGTTGAACAAGCGCAAATTGCTCGGTTTGCAG
CCGAACGACGGCGTGGTGTTAAGCCAGGTACTGCGCGAGGCCAAAGCCAAGACCGAGGAG
CGCGAACGGAACCTGAAGCAAATCCAGAAGCATCAGTATAAAAAGAAACTTCACTTTGAA
ACGCTGTTCGACGATGACGACGGTTTAGTGCATCTGGAGGCACTGGAAATGCTGTCGAAG
CAAGCGTCACTCAAGCTGGAATCACTGATGGCCCCGTTGACGGGGAAGGCGCTGGAGGAG
CTTCAGGAAACGATGAGCGAGGTGAAGGAGCTGTGCGAACTGCCCGAAACGGACAAC

consensusID : consensus_4742#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 553
fasta sequence

                              [CCGCGGACGCGTGGGTTGACGGGGAAGGCTCTCGAGGAGCTGCAGGAAACGATGAGCGAGGTGAAGGAGCTGTGCGAACTGCCCGAAACGGACAACGACGATGCGGACGGGTTACATTCTCCGGACGAGCTGGAAGAAAAGCTGAAGGAAGCCATCGCTGACCTCAATCCGAACGTGAAGGTCGACTTCAGCGAAATCGTTAAGAGTTGGGTCGAGTATACCGGTTGGCTAGAGGACCGGAACGGCGAACGCACCGGCCAGGACGTGTTCGAAAAGGCCATGCATGCGTTAGCTCAAACGACAGCTCTGTGCGTGCTGCGAATGCATAAGCTAGCGGAGATTCTGCTCACCAGCGAGCACCACAGCACGGCCACGGAGGCCGAAGTGGTGGTGCAGCTGACGACGGTTTTTGGCTGGCATCTGAGCGGCGTTGCGACCAGATTCTGCTCCGAGCTGACCAAGATGAAGGATGAGTCCGGCGACGATAGCGACAGTGCGCTTATAACCAACATTTTCTTGGGAGGGCTCGAACAGCACATCCTATGTTCAGAAT]

[+] EMBL BM592410             [CCGCGGACGCGTGGGTTGACGGGGAAGGCTCTCGAGGAGCTGCAGGAAACGATGAGCGAGGTGAAGGAGCTGTGCGAACTGCCCGAAACGGACAACGACGATGCGGACGGGTTACATTCTCCGGACGAGCTGGAAGAAAAGCTGAAGGAAGCCATCGCTGACCTCAATCCGAACGTGAAGGTCGACTTCAGCGAAATCGTTAAGAGTTGGGTCGAGTATACCGGTTGGCTAGAGGACCGGAACGGCGAACGCACCGGCCAGGACGTGTTCGAAAAGGCCATGCATGCGTTAGCTCAAACGACAGCTCTGTGCGTGCTGCGAATGCATAAGCTAGCGGAGATTCTGCTCACCAGCGAGCACCACAGCACGGCCACGGAGGCCGAAGTGGTGGTGCAGCTGACGACGGTTTTTGGCTGGCATCTGAGCGGCGTTGCGACCAGATTCTGCTCCGAGCTGACCAAGATGAAGGATGAGTCCGGCGACGATAGCGACAGTGCGCTTATAACCAACATTTTCTTGGGAGGGCTCGAACAGCACATCCTATGTTCAGAAT]




>consensus_4742#1
CCGCGGACGCGTGGGTTGACGGGGAAGGCTCTCGAGGAGCTGCAGGAAACGATGAGCGAG
GTGAAGGAGCTGTGCGAACTGCCCGAAACGGACAACGACGATGCGGACGGGTTACATTCT
CCGGACGAGCTGGAAGAAAAGCTGAAGGAAGCCATCGCTGACCTCAATCCGAACGTGAAG
GTCGACTTCAGCGAAATCGTTAAGAGTTGGGTCGAGTATACCGGTTGGCTAGAGGACCGG
AACGGCGAACGCACCGGCCAGGACGTGTTCGAAAAGGCCATGCATGCGTTAGCTCAAACG
ACAGCTCTGTGCGTGCTGCGAATGCATAAGCTAGCGGAGATTCTGCTCACCAGCGAGCAC
CACAGCACGGCCACGGAGGCCGAAGTGGTGGTGCAGCTGACGACGGTTTTTGGCTGGCAT
CTGAGCGGCGTTGCGACCAGATTCTGCTCCGAGCTGACCAAGATGAAGGATGAGTCCGGC
GACGATAGCGACAGTGCGCTTATAACCAACATTTTCTTGGGAGGGCTCGAACAGCACATC
CTATGTTCAGAAT

consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_4742#0      TCAAGCGCATCGAAATCCGTTGCATCCATTACGACCAACATCACGCAGGTGATTGAGTCG 60
consensus_4742#1      ------------------------------------------CCGCGGACGCGTGGGTTG 18
                                                                 *** *  *  ** ** *

consensus_4742#0      GGCATCGGTGTGCCCAATCCGGAGGAATTGGCCCGCCGTCAGGCGGAAGAAGAAGCTAAG 120
consensus_4742#1      A----CGGGGAAGGCTCTCGAGGAGCTGCAGGAAACGATGAGCGAGGTGAAGGAGCTGTG 74
                           *** *    *  **  *  *     *    *  * **   *  **** ****  *

consensus_4742#0      CTAAAAGCGGAAGGCT-ACATTCGAGAAGAAAGCGAATCAAACCAAGGCACACAGTCGAG 179
consensus_4742#1      CGAACTGCCCGAAACGGACAACGACGATGCGGACGGGTTACATTCTCCGGACGAGCTGGA 134
                      * **  **   *  *  ***     ** *    **  * * *           **  *  

consensus_4742#0      CGAACGGCCGCTGGATGATAGATTTGGATTCGATCAGCTCGTTTCCGGTGTGACACAGAT 239
consensus_4742#1      AGAAAAGCTGAAGGAAGCCA---------TCGCTGACCTCAATCCGAACGTGAAGGTCGA 185
                       ***  ** *  *** *  *         *** * * ***  * *    ****       

consensus_4742#0      TAGCAGCAAGGTGATCAGCGGT-GGGTTGGACACGCTCGAGGGCATCGGAAAGAAAACGA 298
consensus_4742#1      CTTCAGCGAAATCGTTAAGAGTTGGGTCGAGTATACCGGTTGGCTAGAGGACCGGAACGG 245
                         **** *  *  * *   ** **** *   *  *  *  ***    * *    **** 

consensus_4742#0      TGACCATTTTGCAGGAGAACGATCCCGGATTGTTGAACAAGCGCAAATTGCTCGGTTTGC 358
consensus_4742#1      CGAACGCACCGGCCAGGACGTGTTCGAAAAGGCCATGCATGCGTTA---GCTCAAACGAC 302
                       ** *     *     **    * *   *  *     ** ***  *   ****      *

consensus_4742#0      AGCCGAACGACGGCGTGGTGTTAAGCCAGGTACTGCGCGAGGCCAAAGCCAAGACCGAGG 418
consensus_4742#1      AGCTCTGTG----CGTGCTGCGAATGCATAAGCTAGCGGAGATTCTGCTCACCAGCGAGC 358
                      ***     *    **** **  **  **    **    ***        **  * **** 

consensus_4742#0      AGCGCGA-ACGGAACCTGAAGCAAATCCAGAAGCATCAGTATAAAAAGAAACTTCACTTT 477
consensus_4742#1      ACCACAGCACGGCCACGGAGGCCGAAGTGGTGGTG-CAGC-TGACGACGGTTTTTGGCTG 416
                      * * *   ****   * ** **  *    *  *   ***  * *  *     **    * 

consensus_4742#0      GAAACGCTGTTCGACGATGACGACGGTTTAGTGCATCTGGAGGCACTGGAAATGCTGTCG 537
consensus_4742#1      GCAT--CTGAGCGGCGTTG-CGACCAGATTCTGC-TCCGAGCTGACCAAGATGAAGGATG 472
                      * *   ***  ** ** ** ****    *  *** ** *     **    *     *  *

consensus_4742#0      AAGCAAGCGTCACTCAAGCTGGAATCACTGATGGCCC-CGTTGACGGGGAAGGCGCTGGA 596
consensus_4742#1      AGTCCGGCGACGATAGCGACAGTG-CGCTTATAACCAACATTTTCTTGGGAGG-GCTCGA 530
                      *  *  *** *  *   *   *   * ** **  **  * **  *  ** *** *** **

consensus_4742#0      GGAGCTTCAGGAAACGATGAGCGAGGTGAAGGAGCTGTGCGAACTGCCCGAAACGGACAA 656
consensus_4742#1      ACAGCAC----ATCCTATGTTCAGAAT--------------------------------- 553
                        ***      *  * ***  *    *                                 

consensus_4742#0      C 657
consensus_4742#1      -