These datas are free for academic use only, please contact me for any other use. Anopheles gambiae see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_476#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 555 fasta sequence [TAGGTCGCGCTTTGTAATGATCTATTATGGCTGGCATAAGAGTAGTTTTAGTTGTGTTACTTTTTGTAATGATAGCTTACATGTGCGTTACTGTAGGTGCAAAGAAATCAAGCATGGACAACAATTTTCTGGAAGATGAATTGTTCCCCATCTACGAGTGTGACGAACGAAGCCGAGATTGGACTACACGTTGCTTAGTACCTTTGACTAATGCACAAATGTCAGTGGACCTATGCAAGACTGGTGAGAGACACGATCAACATTTTCTGAAACGTTGCGCGAAGGAGCTGCAAATATTGGGACAGTCGTGTCCACAGCCGGTCTCAGTGTCAGATCTGGCTAAAAATATGCAGGTTCACAAACCACCACCTATGCCGTACGATTCACCAAACATGCCGAAAGTTCCAAAACAAATGTCAAAAACTAAAAAAAATAAAAAGTAAATTCGAACCGAAAAAAAAAAAAAAAAANNAAAAAAAAAAAANCTTTTTNGGGCCCCCCCGGCCCCNNTNNAACTANAAACCNCGAACCAACCTTATTCCNTTGGGGGCCCCA] [+] EMBL CF541971 [TAGGTCGCGCTTTGTAATGATCTATTATGGCTGGCATAAGAGTAGTTTTAGTTGTGTTACTTTTTGTAATGATAGCTTACATGTGCGTTACTGTAGGTGCAAAGAAATCAAGCATGGACAACAATTTTCTGGAAGATGAATTGTTCCCCATCTACGAGTGTGACGAACGAAGCCGAGATTGGACTACACGTTGCTTAGTACCTTTGACTAATGCACAAATGTCAGTGGACCTATGCAAGACTGGTGAGAGACACGATCAACATTTTCTGAAACGTTGCGCGAAGGAGCTGCAAATATTGGGACAGTCGTGTCCACAGCCGGTCTCAGTGTCAGATCTGGCTAAAAATATGCAGGTTCACAAACCACCACCTATGCCGTACGATTCACCAAACATGCCGAAAGTTCCAAAACAAATGTCAAAAACTAAAAAAAATAAAAAGTAAATTCGAACCGAAAAAAAAAAAAAAAAANNAAAAAAAAAAAANCTTTTTNGGGCCCCCCCGGCCCCNNTNNAACTANAAACCNCGAACCAACCTTATTCCNTTGGGGGCCCCA] consensusID : consensus_476#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 332 fasta sequence [CAGATCGCCACGAGGAGGTCGCGCTTGTATGATCTNTTATGGCTGGCATAAGACTAGTTTTAGTTGTGTTACTTTTTGTAATGATAGCTTACATGTGCGTTACTGTAGGTGCAAAGAAATCAAGCATGGACAACAATTTTCTGGGAAGATGAATTGTTCCCCCATCTACNGAGTGTGACGAACGAAGCCGAGATTGGGACTACACGTTGGCTANTTACCTTTGGAACTAATTGGCACCAAATGTCCAGGTGGACCTTATTGCAAGACTGGGTGAGAAGACACGATCCAACATTTTTGGAAAACCGGTTGGGCCGAAAGGNACCTGGCAAATN] [+] EMBL BX467493 [CAGATCGCCACGAGGAGGTCGCGCTTGTATGATCTNTTATGGCTGGCATAAGACTAGTTTTAGTTGTGTTACTTTTTGTAATGATAGCTTACATGTGCGTTACTGTAGGTGCAAAGAAATCAAGCATGGACAACAATTTTCTGGGAAGATGAATTGTTCCCCCATCTACNGAGTGTGACGAACGAAGCCGAGATTGGGACTACACGTTGGCTANTTACCTTTGGAACTAATTGGCACCAAATGTCCAGGTGGACCTTATTGCAAGACTGGGTGAGAAGACACGATCCAACATTTTTGGAAAACCGGTTGGGCCGAAAGGNACCTGGCAAATN] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_476#0 --------------TAGGTCGCGCTTTGTAATGATCTATTATGGCTGGCATAAGAGTAGT 46 consensus_476#1 CAGATCGCCACGAGGAGGTCGCGCTT-GTA-TGATCTNTTATGGCTGGCATAAGACTAGT 58 *********** *** ****** ***************** **** consensus_476#0 TTTAGTTGTGTTACTTTTTGTAATGATAGCTTACATGTGCGTTACTGTAGGTGCAAAGAA 106 consensus_476#1 TTTAGTTGTGTTACTTTTTGTAATGATAGCTTACATGTGCGTTACTGTAGGTGCAAAGAA 118 ************************************************************ consensus_476#0 ATCAAGCATGGACAACAATTTTCTGG-AAGATGAATTGTTCCCC-ATCTACG-AGTGTGA 163 consensus_476#1 ATCAAGCATGGACAACAATTTTCTGGGAAGATGAATTGTTCCCCCATCTACNGAGTGTGA 178 ************************** ***************** ****** ******* consensus_476#0 CGAACGAAGCCGAGATTGG-ACTACACGTTGCTTAGT-ACCTTTG--ACTAAT--GCAC- 216 consensus_476#1 CGAACGAAGCCGAGATTGGGACTACACGTTGGCTANTTACCTTTGGAACTAATTGGCACC 238 ******************* *********** ** * ******* ****** **** consensus_476#0 AAATGTC--AGTGGACCTA--TGCAAGACTGG-TGAGA-GACACGATC-AACATTTTCTG 269 consensus_476#1 AAATGTCCAGGTGGACCTTATTGCAAGACTGGGTGAGAAGACACGATCCAACATTTTTGG 298 ******* ******** *********** ***** ********* ******** * consensus_476#0 AAACGTTGCGCGAAGGAGCTGCAAATATTGGGACAGTCGTGTCCACAGCCGGTCTCAGTG 329 consensus_476#1 AAA----ACCGGTTGGGCCGAAAGGNACCTGGCAAATN---------------------- 332 *** * * ** * * * ** * * consensus_476#0 TCAGATCTGGCTAAAAATATGCAGGTTCACAAACCACCACCTATGCCGTACGATTCACCA 389 consensus_476#1 ------------------------------------------------------------ consensus_476#0 AACATGCCGAAAGTTCCAAAACAAATGTCAAAAACTAAAAAAAATAAAAAGTAAATTCGA 449 consensus_476#1 ------------------------------------------------------------ consensus_476#0 ACCGAAAAAAAAAAAAAAAAANNAAAAAAAAAAAANCTTTTTNGGGCCCCCCCGGCCCCN 509 consensus_476#1 ------------------------------------------------------------ consensus_476#0 NTNNAACTANAAACCNCGAACCAACCTTATTCCNTTGGGGGCCCCA 555 consensus_476#1 ---------------------------------------------- |
Copyright Wed Dec 3 12:11:56 CET 2003 Hubert Wassner (hubert.wassner@noos.fr) | ||||