These datas are free for academic use only, please contact me for any other use. Anopheles gambiae see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_4791#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 2 consensus length = 684 fasta sequence [GACCCACGCGTCCGGTACGCCCGCCCCGCCAACAAACCCATCCACGGATAGTTTCGTTCACGTACACACACCGATCGAAACTCCCCGTCTGTTTATCGTGGCTTAGTGAGGGTGAGTGGAAGAAGAAAAAAAAACGAAAGAAAGCACCGAGCTGGCTGCAGCCGAACTCCGTCATCATCATTCGGGGACGGCTGGAACACGGGAACTCTGTGGCCTTTACCGGGGATTTTTTGCGCTGAATCGTGTTATCTTGGCCACCGTTCCTGCTTGAGACGCTGCTGTGGAGAGAGTGACGCTGCAAAACTTTTACCCATTTTCCTCTGGCTCGAGTGTTCTCGCGTGGGGTTCAGTGGCCGACAGCAGCAAACCGCGGGCAAGGGGGTGTGTGGCAGGCTGTTCCCCATACATTTGGAACCCACGTAGGCCAACTAACATACCTGTGTGTGTGTGCGTGCGTGTGTGGGAAGAGAAAGAAGCGAAAAGGAGCGAGGAGGCCCAGGAAGAAAGTGTCGCCTTTTTCTTCTTTTCTTTCGGCGTTGTGTGGTACGATTAGGTAAAGCTGGTGAGGCAATGCAAAGTAACGCTAGGTGACGGAATCGGGCGGATTGTGTGTGTGTGTGTGTGAGTGAGCTGGCACTGTAGCTCCCCACTCCAGCTGGCAAGGGAAGGAAAACAATCCCAAAG] [+] EMBL BM619522 [GACCCACGCGTCCGGTACGCCCGCCCCGCCAACAAACCCATCCACGGATAGTTTCGTTCACGTACACACACCGATCGAAACTCCCCGTCTGTTTATCGTGGCTTAGTGAGGGTGAGTGGAAGAAGAAAAAAAAACGAAAGAAAGCACCGAGCTGGCTGCAGCCGAACTCCGTCATCATCATTCGGGGACGGCTGGAACACGGGAACTCTGTGGCCTTTACCGGGGATTTTTTGCGCTGAATCGTGTTATCTTGGCCACCGTTCCTGCTTGAGACGCTGCTGTGGAGAGAGTGACGCTGCAAAACTTTTACCCATTTTCCTCTGGCTCGAGTGTTCTCGCGTGGGGTTCAGTGGCCGACAGCAGCAAACCGCGGGCAAGGGGGTGTGTGGCAGGCTGTTCCCCATACATTTGGAACCCACGTAGGCCAACTAACATACCTGTGTGTGTGTGCGTGCGTGTGTGGGAAGAGAAAGAAGCGAAAAGGAGCGAGGAGGCCCAGGAAGAAAGTGTCGCCTTTTTCTTCTTTTCTTTCGGCGTTGTGTGGTACGATTAGGTAAAGCTGGTGAGGCAATGCAAAGTAACGCTAG ] [+] EMBL BM575545 [ ccgCGTACACACACCGATCGAAACTCCCCGTCTGTTTATCGTGGCTTATTGAGGGTGAGTGGAAGAAGAAAAAAAAACAAAAGAAAGCACCGAGCTGGCTGCAGCCGAACTCCGTCATCATCATTCAGGGACGGCTGGAACACGGGAACTCTGTGGCCTTTACCGGGGATTTTTTGCGCTGAATCGTGTTATCTTGGCCACCGTTCCTGCTTGAGACACTGCTGTGGAGAGAGTGACGCTGCAAAACTTTTACCCATTTTCCTCTGGCTCGAGTGTTCTCGCGTGGGGTTCAGTGGCCGACAGCAGCAAACCGCGGGCAAGGGGGTGTGTGGCAGGCTGTTCCCCATACATTTGGAACCCACGTAGGCCAACTAACATACCTGTGTGTGTGTGCGTGAGTGTGTGGGAGGAGAAAGAAGCGAAAAGGAGCGAGGAGGCCCACGAAGAAAGTGTCGCCTTTTTCTTCTTTTCTTTCGGCGTTGCGTGGTACGATTAGGTAAAGCTGGTGAGGCAATGCAAAGTAACGCTAGGTGACGGAATCGGGCGGATTGTGTGTGTGTGTGTGTGAGTGAGCTGGCACTGTAGCTCCCCACTCCAGCTGGCAAGGGAAGGAAAACAATCCCAAAG] consensusID : consensus_4791#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 550 fasta sequence [GATCCCCGAGGTTTGCTCGCACTTCCCTTCCATGCTGTACGCCCGCCCCGCCAACAAACCCATCCACGGATAGTTTCGTTCACGTACACACACCGATCGAAACTCCCCGTCTGTTTATCGTGGCTTAGTGAGGGTGAGTGGAAGAAGAAAAAAAAACGAAAGAAAGCACCGAGCTGGCTGCAGCCGAACTCCGTCATCATCATTCGGGGACGGCTGGAACACGGGAACTCTGTGGCCTTTACCGGGGCATTTTTTGCGCTGAATCGTGTTATCTTGGCCACCGTTCCTGCTTGAGACGCTGCTGTGGAGAGAGTGACGCTGCAAAACTTTTACCCATTTTCCTCTGGCTCGAGTGTTCTCGCGTGGGGTTCAGNTGGCCGACAGCAGCACCACCGCGGGCAACGGGGGTGTGTGGCAGGCTGTTCCCCACTACACTCTTGCGACACCCCCACGCCTAGCGCCCANACCCTAACCAATACCCTGCTGCTGTGTGTGCGTGCGCTGCTGCTGCGCGCACACGCACGCACACACGCACACGCCGACACACACG] [+] EMBL AL930701 [GATCCCCGAGGTTTGCTCGCACTTCCCTTCCATGCTGTACGCCCGCCCCGCCAACAAACCCATCCACGGATAGTTTCGTTCACGTACACACACCGATCGAAACTCCCCGTCTGTTTATCGTGGCTTAGTGAGGGTGAGTGGAAGAAGAAAAAAAAACGAAAGAAAGCACCGAGCTGGCTGCAGCCGAACTCCGTCATCATCATTCGGGGACGGCTGGAACACGGGAACTCTGTGGCCTTTACCGGGGCATTTTTTGCGCTGAATCGTGTTATCTTGGCCACCGTTCCTGCTTGAGACGCTGCTGTGGAGAGAGTGACGCTGCAAAACTTTTACCCATTTTCCTCTGGCTCGAGTGTTCTCGCGTGGGGTTCAGNTGGCCGACAGCAGCACCACCGCGGGCAACGGGGGTGTGTGGCAGGCTGTTCCCCACTACACTCTTGCGACACCCCCACGCCTAGCGCCCANACCCTAACCAATACCCTGCTGCTGTGTGTGCGTGCGCTGCTGCTGCGCGCACACGCACGCACACACGCACACGCCGACACACACG] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_4791#0 ----------------------GACCCACGCGTCCGGTACGCCCGCCCCGCCAACAAACC 38 consensus_4791#1 GATCCCCGAGGTTTGCTCGCACTTCCCTTCCATGCTGTACGCCCGCCCCGCCAACAAACC 60 *** * * * ************************ consensus_4791#0 CATCCACGGATAGTTTCGTTCACGTACACACACCGATCGAAACTCCCCGTCTGTTTATCG 98 consensus_4791#1 CATCCACGGATAGTTTCGTTCACGTACACACACCGATCGAAACTCCCCGTCTGTTTATCG 120 ************************************************************ consensus_4791#0 TGGCTTAGTGAGGGTGAGTGGAAGAAGAAAAAAAAACGAAAGAAAGCACCGAGCTGGCTG 158 consensus_4791#1 TGGCTTAGTGAGGGTGAGTGGAAGAAGAAAAAAAAACGAAAGAAAGCACCGAGCTGGCTG 180 ************************************************************ consensus_4791#0 CAGCCGAACTCCGTCATCATCATTCGGGGACGGCTGGAACACGGGAACTCTGTGGCCTTT 218 consensus_4791#1 CAGCCGAACTCCGTCATCATCATTCGGGGACGGCTGGAACACGGGAACTCTGTGGCCTTT 240 ************************************************************ consensus_4791#0 ACCGGGG-ATTTTTTGCGCTGAATCGTGTTATCTTGGCCACCGTTCCTGCTTGAGACGCT 277 consensus_4791#1 ACCGGGGCATTTTTTGCGCTGAATCGTGTTATCTTGGCCACCGTTCCTGCTTGAGACGCT 300 ******* **************************************************** consensus_4791#0 GCTGTGGAGAGAGTGACGCTGCAAAACTTTTACCCATTTTCCTCTGGCTCGAGTGTTCTC 337 consensus_4791#1 GCTGTGGAGAGAGTGACGCTGCAAAACTTTTACCCATTTTCCTCTGGCTCGAGTGTTCTC 360 ************************************************************ consensus_4791#0 GCGTGGGGTTCAGT-GGCCGACAGCAGCAA-ACCGCGGGCAA-GGGGGTGTGTGGCAGGC 394 consensus_4791#1 GCGTGGGGTTCAGNTGGCCGACAGCAGCACCACCGCGGGCAACGGGGGTGTGTGGCAGGC 420 ************* ************** *********** ***************** consensus_4791#0 TGTTCCCCAT---ACATTTGGAACCCACGTAGGCC-AACTAACATACCTGTGTGTGTGTG 450 consensus_4791#1 TGTTCCCCACTACACTCTTGCGACACCCCCACGCCTAGCGCCCANACCCTAACCAATACC 480 ********* ** *** ** * * * *** * * ** *** * consensus_4791#0 CGTGCG-TGTGTGGGAAGAGAAAGAAGCGAAAAGGAGCGAGGAGGCCCAGGAAGAAAGTG 509 consensus_4791#1 CTGCTGCTGTGTGTGCGTGCGCTGCTGCTGCGCGCA-CACGCACGCACAC-ACGCACACG 538 * * ****** * * ** * * * * * ** ** * * * * consensus_4791#0 TCGCCTTTTTCTTCTTTTCTTTCGGCGTTGTGTGGTACGATTAGGTAAAGCTGGTGAGGC 569 consensus_4791#1 CCGACACACACG------------------------------------------------ 550 ** * * consensus_4791#0 AATGCAAAGTAACGCTAGGTGACGGAATCGGGCGGATTGTGTGTGTGTGTGTGTGAGTGA 629 consensus_4791#1 ------------------------------------------------------------ consensus_4791#0 GCTGGCACTGTAGCTCCCCACTCCAGCTGGCAAGGGAAGGAAAACAATCCCAAAG 684 consensus_4791#1 ------------------------------------------------------- |
Copyright Wed Dec 3 12:11:56 CET 2003 Hubert Wassner (hubert.wassner@noos.fr) | ||||