cluster # 4798

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Anopheles gambiae
cluster # 4798 cluster # 4798 Sequences # 3 consensus # 3

see consensus multiple alignment with clustalw

Direct access to contigs :

consensus_4798#0 length = 700 sequences # 1

consensus_4798#1 length = 620 sequences # 1
consensus_4798#2 length = 317 sequences # 1

consensusID : consensus_4798#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 700
fasta sequence

                              [CCGAAATATTCGGCTTCGATTTTTCGCCACATATTGGAAGGAAGAAAAAGTAAATTTTCTTAATTAAAACCATCTTCGAATCCGCCTATCGCTATCAAGTGAGTGCGGCCGGTCGTATAGTTTAGTGAAATAGTCGTATCTGGCTAGAATCTTCACCCGTGCCAATGGAGGAGCACAATATGCATTTGGGCCAACCGATGCCGATGGCCATGTCGGACGACCCACCAACCGGGAACCCCAATCCGCACCAGGGGAAGAAGGCCTCGCGGGGTAAAAAGGCACCGAAAGTGGTGGAGAGCTCCCAGCCGATCGAGGAAGCGCTCAAGTCGGAACTGACGACGAACAACATGAAGACGCCGATCTCGGTGCTGCAGGAGCTGCTCAGCCGTCGTGGCATCACACCGCAGTATGATCTGATACAGGTGGAAGGGGCAGTGCACGAACCGACGTTCCGGTATCGTGTTTCGTATCAGGATAAGGATGCAATGGGTACGGGCAAATCGAAAAAGGAAGCGAAACATGCCGCTGCAAAAGCGTTGATAGACAAGCTAACGGGATCGATATTTCTCGACCATCCCGCCGTATACATGAACGTCCACAAGCCAGAAGTCGTAAATGTACACACCAACAATAACGTCAATGGAGAGGAGGAACCGACCGGCAATCCAATCGGCTGGCTGCAGCAAATGTGTATGGCCCG]

[+] EMBL BM638621             [CCGAAATATTCGGCTTCGATTTTTCGCCACATATTGGAAGGAAGAAAAAGTAAATTTTCTTAATTAAAACCATCTTCGAATCCGCCTATCGCTATCAAGTGAGTGCGGCCGGTCGTATAGTTTAGTGAAATAGTCGTATCTGGCTAGAATCTTCACCCGTGCCAATGGAGGAGCACAATATGCATTTGGGCCAACCGATGCCGATGGCCATGTCGGACGACCCACCAACCGGGAACCCCAATCCGCACCAGGGGAAGAAGGCCTCGCGGGGTAAAAAGGCACCGAAAGTGGTGGAGAGCTCCCAGCCGATCGAGGAAGCGCTCAAGTCGGAACTGACGACGAACAACATGAAGACGCCGATCTCGGTGCTGCAGGAGCTGCTCAGCCGTCGTGGCATCACACCGCAGTATGATCTGATACAGGTGGAAGGGGCAGTGCACGAACCGACGTTCCGGTATCGTGTTTCGTATCAGGATAAGGATGCAATGGGTACGGGCAAATCGAAAAAGGAAGCGAAACATGCCGCTGCAAAAGCGTTGATAGACAAGCTAACGGGATCGATATTTCTCGACCATCCCGCCGTATACATGAACGTCCACAAGCCAGAAGTCGTAAATGTACACACCAACAATAACGTCAATGGAGAGGAGGAACCGACCGGCAATCCAATCGGCTGGCTGCAGCAAATGTGTATGGCCCG]




>consensus_4798#0
CCGAAATATTCGGCTTCGATTTTTCGCCACATATTGGAAGGAAGAAAAAGTAAATTTTCT
TAATTAAAACCATCTTCGAATCCGCCTATCGCTATCAAGTGAGTGCGGCCGGTCGTATAG
TTTAGTGAAATAGTCGTATCTGGCTAGAATCTTCACCCGTGCCAATGGAGGAGCACAATA
TGCATTTGGGCCAACCGATGCCGATGGCCATGTCGGACGACCCACCAACCGGGAACCCCA
ATCCGCACCAGGGGAAGAAGGCCTCGCGGGGTAAAAAGGCACCGAAAGTGGTGGAGAGCT
CCCAGCCGATCGAGGAAGCGCTCAAGTCGGAACTGACGACGAACAACATGAAGACGCCGA
TCTCGGTGCTGCAGGAGCTGCTCAGCCGTCGTGGCATCACACCGCAGTATGATCTGATAC
AGGTGGAAGGGGCAGTGCACGAACCGACGTTCCGGTATCGTGTTTCGTATCAGGATAAGG
ATGCAATGGGTACGGGCAAATCGAAAAAGGAAGCGAAACATGCCGCTGCAAAAGCGTTGA
TAGACAAGCTAACGGGATCGATATTTCTCGACCATCCCGCCGTATACATGAACGTCCACA
AGCCAGAAGTCGTAAATGTACACACCAACAATAACGTCAATGGAGAGGAGGAACCGACCG
GCAATCCAATCGGCTGGCTGCAGCAAATGTGTATGGCCCG

consensusID : consensus_4798#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 620
fasta sequence

                              [CCGCGGACGCGTGGGTGTATGGCCCGCCGACTGCCACCGCCAACGTACGAGACGGAAACGGAGGAAGGATTACCCCACGAGCGCCAGTTCACTATCGCCTGTGTGGTACTGAACTACCGTGAGGTTGGGGAAGGCAAAAGTAAAAAGATCGCCAAACGGCAAGCAGCACAGCGGATGTGGCAGCGGCTGCAGGACCAACCGCTCGAACCGAGCCAAATAATGCAGCTGCTGGACGAGGAAGGCAATGAGGAGAACTTAAGCCTTTGCGATAGAAGCATCGACTTCATACGCTTACTGGCCGACATAGCGAAGGAGCAACGGTTCGAGGTCACGTACGTGGACATCGAAGAGAAGGCAGGCAATGGTAAATTCCAGTGTCTGGTGCAACTATCCACCATGCCCGTTGCCGTGTGCCATGGTAGTGGCAATTCAATTCAGGAGGCACAATCGTACGCGGCGCGGAATTCGCTCGAGTATCTCAAAATAATGACCAAACCTTAAGCGGGTTCAATAGTAATTGCGAGTACCGCGTTTACTAGTCCTTGCCGGGATTCGGAGTGCGCTACACACTGGCCTAGACACTGGCTAAGGGGTGCAAGCGCGCGCGCGCGTTTTCGGTT]

[+] EMBL BM593942             [CCGCGGACGCGTGGGTGTATGGCCCGCCGACTGCCACCGCCAACGTACGAGACGGAAACGGAGGAAGGATTACCCCACGAGCGCCAGTTCACTATCGCCTGTGTGGTACTGAACTACCGTGAGGTTGGGGAAGGCAAAAGTAAAAAGATCGCCAAACGGCAAGCAGCACAGCGGATGTGGCAGCGGCTGCAGGACCAACCGCTCGAACCGAGCCAAATAATGCAGCTGCTGGACGAGGAAGGCAATGAGGAGAACTTAAGCCTTTGCGATAGAAGCATCGACTTCATACGCTTACTGGCCGACATAGCGAAGGAGCAACGGTTCGAGGTCACGTACGTGGACATCGAAGAGAAGGCAGGCAATGGTAAATTCCAGTGTCTGGTGCAACTATCCACCATGCCCGTTGCCGTGTGCCATGGTAGTGGCAATTCAATTCAGGAGGCACAATCGTACGCGGCGCGGAATTCGCTCGAGTATCTCAAAATAATGACCAAACCTTAAGCGGGTTCAATAGTAATTGCGAGTACCGCGTTTACTAGTCCTTGCCGGGATTCGGAGTGCGCTACACACTGGCCTAGACACTGGCTAAGGGGTGCAAGCGCGCGCGCGCGTTTTCGGTT]




>consensus_4798#1
CCGCGGACGCGTGGGTGTATGGCCCGCCGACTGCCACCGCCAACGTACGAGACGGAAACG
GAGGAAGGATTACCCCACGAGCGCCAGTTCACTATCGCCTGTGTGGTACTGAACTACCGT
GAGGTTGGGGAAGGCAAAAGTAAAAAGATCGCCAAACGGCAAGCAGCACAGCGGATGTGG
CAGCGGCTGCAGGACCAACCGCTCGAACCGAGCCAAATAATGCAGCTGCTGGACGAGGAA
GGCAATGAGGAGAACTTAAGCCTTTGCGATAGAAGCATCGACTTCATACGCTTACTGGCC
GACATAGCGAAGGAGCAACGGTTCGAGGTCACGTACGTGGACATCGAAGAGAAGGCAGGC
AATGGTAAATTCCAGTGTCTGGTGCAACTATCCACCATGCCCGTTGCCGTGTGCCATGGT
AGTGGCAATTCAATTCAGGAGGCACAATCGTACGCGGCGCGGAATTCGCTCGAGTATCTC
AAAATAATGACCAAACCTTAAGCGGGTTCAATAGTAATTGCGAGTACCGCGTTTACTAGT
CCTTGCCGGGATTCGGAGTGCGCTACACACTGGCCTAGACACTGGCTAAGGGGTGCAAGC
GCGCGCGCGCGTTTTCGGTT

consensusID : consensus_4798#2
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 317
fasta sequence

                              [GCCCCGAGGTNNGGTACGGGCAAATCGAAAAAGGAAGCGAAACATGCCGCTGCAAAAGCGTTGATAGACAATGCTAACGGGATCGATATTTCTCGACCATCCCGCCGTATACATGAACGTCCACAAGCCAGAAGTCGTAAATTTACACACCAACAATAACGTCAATGGAGAGGAGGAACCGACCGGCAATCCAATCGGCTGGCTGCAGGAAATGTGTATGGCCCGCCGACTGCCACCGCCAACGTACGAGACGGAAACGGAGGAAGGATTACCCCACGAGCGCCAGTTCACGATCGCCTGTGTGGTATTGAACTACC]

[+] EMBL AL931772             [GCCCCGAGGTNNGGTACGGGCAAATCGAAAAAGGAAGCGAAACATGCCGCTGCAAAAGCGTTGATAGACAATGCTAACGGGATCGATATTTCTCGACCATCCCGCCGTATACATGAACGTCCACAAGCCAGAAGTCGTAAATTTACACACCAACAATAACGTCAATGGAGAGGAGGAACCGACCGGCAATCCAATCGGCTGGCTGCAGGAAATGTGTATGGCCCGCCGACTGCCACCGCCAACGTACGAGACGGAAACGGAGGAAGGATTACCCCACGAGCGCCAGTTCACGATCGCCTGTGTGGTATTGAACTACC]




>consensus_4798#2
GCCCCGAGGTNNGGTACGGGCAAATCGAAAAAGGAAGCGAAACATGCCGCTGCAAAAGCG
TTGATAGACAATGCTAACGGGATCGATATTTCTCGACCATCCCGCCGTATACATGAACGT
CCACAAGCCAGAAGTCGTAAATTTACACACCAACAATAACGTCAATGGAGAGGAGGAACC
GACCGGCAATCCAATCGGCTGGCTGCAGGAAATGTGTATGGCCCGCCGACTGCCACCGCC
AACGTACGAGACGGAAACGGAGGAAGGATTACCCCACGAGCGCCAGTTCACGATCGCCTG
TGTGGTATTGAACTACC

consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_4798#0      CCGAAATATTCGGCTTCGATTTTTCGCCACATATTGGAAGGAAGAAAAAGTAAATTTTCT 60
consensus_4798#2      ------------------------------------------------------------
consensus_4798#1      ---------------------------------CCGCGGACGCGTGGGTGTATGGCCCGC 27
                                                                                  

consensus_4798#0      TAATTAAAACCATCTTCGAATCCGCCTATCGCTATCAAGTGAGTGCGGCCGGTCGTATAG 120
consensus_4798#2      ------------------------------------------------------------
consensus_4798#1      CGACTGCCACCGCCAACGTACGAGACGGAAACGGAGGAAGGATTACCCCACGAGCGCCAG 87
                                                                                  

consensus_4798#0      TTTAGTGAAATAGTCGTATCTGGCTAGAATCTTCACCCGTGCCAATGGAGGAGCACAATA 180
consensus_4798#2      ------------------------------------------------------------
consensus_4798#1      TTCACT--ATCGCCTGTGTGGTACTGAA-----CTACCGTGAGGTTGGGGAAGGCAAAAG 140
                                                                                  

consensus_4798#0      TGCATTTGGGCCAACCGATGCCGATGGCCATGTCGGACGACCCACCAACCGGGAACCCCA 240
consensus_4798#2      ------------------------------------------------------------
consensus_4798#1      TAAAA--AGATCGCCAAACGGCAAGCAGCACAGCGGATGTGGCAGCGGCTGCAGGACCAA 198
                                                                                  

consensus_4798#0      ATCCGCACCAGGGGAAGAAGGCCTCGCGGGGTAAAAAGGCACCGAAAGTGGTGGAGAGCT 300
consensus_4798#2      ------------------------------------------------------------
consensus_4798#1      --CCGCTCGAACCGAGCCAAATAATGCAGCTGCTGGACGAGGAAGGCAATGAGGAGAACT 256
                                                                                  

consensus_4798#0      CCCAGCCGATCGAGGAAGCGCTCAAGTCGGAACTGACGACGAACAACATGAAGACGCCGA 360
consensus_4798#2      ------------------------------------------------------------
consensus_4798#1      TAAGCCTTTGCGATAGAAGCATCGACTTCATACGCTTACTGGCCGACATAGCGAAGG-AG 315
                                                                                  

consensus_4798#0      TCTCGGTGCTGCAGGAGCTGCTCAGCCGTCGTGGCATCACACCGCAGTATGATCTGATAC 420
consensus_4798#2      ------------------------------------------------------------
consensus_4798#1      CAACGGTTCGAGGTCACGTACGTGGACATCGAAGAGAAGGCAGGCAATGGTA---AATTC 372
                                                                                  

consensus_4798#0      AGGTGGAAGGGGCAGTGCACGAACCGACGTTCCGGTATCGTGTTTCGTATCAGGATAAGG 480
consensus_4798#2      ------------------------------------------------------GCCCCG 6
consensus_4798#1      CAGTGTCTGGTGCAACTATCCACCATGCCCGTTGCCGTGTGCCATGGTAGTGGCAATTCA 432
                                                                                  

consensus_4798#0      ATGCAATGGGTACGGGCAAATCGAAAAAGGAAGCGAAACATGCCGCTGCAAAAGCGTTGA 540
consensus_4798#2      AGGTNN--GGTACGGGCAAATCGAAAAAGGAAGCGAAACATGCCGCTGCAAAAGCGTTGA 64
consensus_4798#1      ATTCAGGAGGCACAATCGTACGCGGCGCGGAATTCGCTCGAGTATCT-CAAAATAATGAC 491
                      *       ** **   *  *        ****      *  *   ** *****   *   

consensus_4798#0      TAGACAA-GCTAACGGGATCGATATTTCTCGACCATCCCGCCGTATACATGAACGT-CCA 598
consensus_4798#2      TAGACAATGCTAACGGGATCGATATTTCTCGACCATCCCGCCGTATACATGAACGT-CCA 123
consensus_4798#1      CAAACCT--TAAGCGGGTTCAATAGTAATTGCGAGTACCGC-GTTTACTAGTCCTTGCCG 548
                       * **      * **** ** *** *  * *    * **** ** ***  *  * * ** 

consensus_4798#0      CAAGCCAGAAGTCGTAAATGTACACACCAACAATAACGTCAATGGAGAGGAGGAACCGAC 658
consensus_4798#2      CAAGCCAGAAGTCGTAAATTTACACACCAACAATAACGTCAATGGAGAGGAGGAACCGAC 183
consensus_4798#1      GGATTCGGAGTGCGC-----TACACACTGGCCTAGACACTGGCTAAGGGGTGCAAGCGCG 603
                        *  * **   **      *******   *    **        ** ** * ** **  

consensus_4798#0      CGGCAATCCAATCGGCTGGCTGCAGCAAATGTGTATGGCCCG------------------ 700
consensus_4798#2      CGGCAATCCAATCGGCTGGCTGCAGGAAATGTGTATGGCCCGCCGACTGCCACCGCCAAC 243
consensus_4798#1      CGCGCGCGTTTTCGGTT------------------------------------------- 620
                      **         **** *                                           

consensus_4798#0      ------------------------------------------------------------
consensus_4798#2      GTACGAGACGGAAACGGAGGAAGGATTACCCCACGAGCGCCAGTTCACGATCGCCTGTGT 303
consensus_4798#1      ------------------------------------------------------------
                                                                                  

consensus_4798#0      --------------
consensus_4798#2      GGTATTGAACTACC 317
consensus_4798#1      --------------