cluster # 4802

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Anopheles gambiae
cluster # 4802 cluster # 4802 Sequences # 3 consensus # 2

see consensus multiple alignment with clustalw

Direct access to contigs :

consensus_4802#0 length = 667 sequences # 2

consensus_4802#1 length = 599 sequences # 1

consensusID : consensus_4802#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 2
consensus length = 667
fasta sequence

                              [CCGCTCGGCATAGCGCTGCTCACGCTCGCGCTGTTCGTGTCCGCACGGATGGGCCTGTACCAGGAGGTGCTGTACAAGCGGTACGGCAAGCACCCGAAGGAGGCCCTGTTCTACACCCACCTGCTGCCGCTGCCCTTCTTTGCGCTGCTGGCGGGCAACATCTGGGAGCACGTGCAGCTCGCCAATGCCAGCCCGCTGCAGCCGATCCCGGCCCTGGGCGTGTCCCTGCCCATCACCTGGCTGTA-CCTGCTGGGCAACGTACTGACGCAGTACGTGTGCATCAGCTCCGTGTACGTGCTGACGACCGAATGCTCCTCGCTGACGGTGACGCTGGTCGTGACGCTGCGCAAGTTCGTGTCGCTGCTGTTTTCGATCGTGTACTTTAGCAACCCGTTCACCGTGCAGCACTGGATCGGTACGATACTGGTGTTCGTTGGTACGATCATCTTCACCGAGGTGGTCGGAAAGGTGCGGGCCGCCTTGGCTCCTGCCGAGGAGAAGAAAAAGGTTAAATAAAGCGAAAACGGTACGCTTAATGCTCAAAGTGAGAGGCTGAAAACGGTGCGAGCCAATGGAAGCATCAGGATAATTAAGGAGAGAGAGAGACGGTGAGAAAGGAAAACAAACACAGGTTGCTCTATAATTGAAGAAATAAGGACAATATGAT]

[+] EMBL BM645843             [CCGCTCGGCATAGCGCTGCTCACGCTCGCGCTGTTCGTGTCCGCACGGATGGGCCTGTACCAGGAGGTGCTGTACAAGCGGTACGGCAAGCACCCGAAGGAGGCCCTGTTCTACACCCACCTGCTGCCGCTGCCCTTCTTTGCGCTGCTGGCGGGCAACATCTGGGAGCACGTGCAGCTCGCCAATGCCAGCCCGCTGCAGCCGATCCCGGCCCTGGGCGTGTCCCTGCCCATCACCTGGCTGTA CCTGCTGGGCAACGTACTGACGCAGTACGTGTGCATCAGCTCCGTGTACGTGCTGACGACCGAATGCTCCTCGCTGACGGTGACGCTGGTCGTGACGCTGCGCAAGTTCGTGTCGCTGCTGTTTTCGATCGTGTACTTTAGCAACCCGTTCACCGTGCAGCACTGGATCGGTACGATACTGGTGTTCGTTGGTACGATCATCTTCACCGAGGTGGTCGGAAAGGTGCGGGCCGCCTTGGCTCCTGCCGAGGAGAAGAAAAAGGTTAAATAAAGCGAAAACGGTACGCTTAATGCTCAAAGTGAGAGGCTGAAAACGGTGCGAGCCAATGGAAGCATCAGGATAATTAAGGAGAGAGAGAGACGGTGAGAAAGGAAAACAAACACAGGTTGCTCTATAATTGAAGAAATAAGGACAATATGAT]
[+] EMBL AL934888             [                                                                                                                                                                                                                                               ctTGTATCTTGCTGGGCAACGTACTGACGCAGTACGTGTGCATCAGCTCCGTGTACGTGCTGACGACCGAATGCTCCTCGCTGACGGTGACGCTGGTCGTGACGCTGCGCAAGTTCGTGTCGCTGCTGTTTTCGATCGT                                                                                                                                                                                                                                                                                                  ]




>consensus_4802#0
CCGCTCGGCATAGCGCTGCTCACGCTCGCGCTGTTCGTGTCCGCACGGATGGGCCTGTAC
CAGGAGGTGCTGTACAAGCGGTACGGCAAGCACCCGAAGGAGGCCCTGTTCTACACCCAC
CTGCTGCCGCTGCCCTTCTTTGCGCTGCTGGCGGGCAACATCTGGGAGCACGTGCAGCTC
GCCAATGCCAGCCCGCTGCAGCCGATCCCGGCCCTGGGCGTGTCCCTGCCCATCACCTGG
CTGTACCTGCTGGGCAACGTACTGACGCAGTACGTGTGCATCAGCTCCGTGTACGTGCTG
ACGACCGAATGCTCCTCGCTGACGGTGACGCTGGTCGTGACGCTGCGCAAGTTCGTGTCG
CTGCTGTTTTCGATCGTGTACTTTAGCAACCCGTTCACCGTGCAGCACTGGATCGGTACG
ATACTGGTGTTCGTTGGTACGATCATCTTCACCGAGGTGGTCGGAAAGGTGCGGGCCGCC
TTGGCTCCTGCCGAGGAGAAGAAAAAGGTTAAATAAAGCGAAAACGGTACGCTTAATGCT
CAAAGTGAGAGGCTGAAAACGGTGCGAGCCAATGGAAGCATCAGGATAATTAAGGAGAGA
GAGAGACGGTGAGAAAGGAAAACAAACACAGGTTGCTCTATAATTGAAGAAATAAGGACA
ATATGAT

consensusID : consensus_4802#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 599
fasta sequence

                              [CGACCCACGCGTCCGGGGCAACGTACTGACGCAGTACGTGTGCATCAGCTCCGTGTACGTGCTGACGACCGAATGCTCCTCGCTGACGGTGACGCTGGTCGTGACGCTGCGCAAGTTCGTGTCGCTGCTGTTTTCGATCGTGTACTTTAGCAACCCGTTCACCGTGCAGCACTGGATCGGTACGATACTGGTGTTCGTTGGTACGATCATCTTCACCGAGGTGGTCGGAAAGGTGCGGTCCGCCTTGGCTCCTGCCGAGGAGAAGAAAAAGGTTAAGTAAGGCGAAACGGTACGCTTAATGCTCAAAGTGAGAGGCTGAAAATGGTGCGGGCCAATCGAAGCATCAGGATAATTAAGGAGAGAGAGAGACGGTGAGAAAGGAAAACAAACACAGGTTACTCTATGATTGAAGAAATAAGGACAATATGATGTTGTGTCGGAGGGTCGGTTTAGAAATTACGTTTTTTTGTTCGAATAGCTTAGCTTACCTTTTTATCTTACTGAAGTGTGGATATTTTTGAACAACGATACAAGCACAGGCTAAACAGTTTTTGGTCCCGTTTTTTAGAATGATACATGGAATATCGCGTACCTCGTGG]

[+] EMBL BM621777             [CGACCCACGCGTCCGGGGCAACGTACTGACGCAGTACGTGTGCATCAGCTCCGTGTACGTGCTGACGACCGAATGCTCCTCGCTGACGGTGACGCTGGTCGTGACGCTGCGCAAGTTCGTGTCGCTGCTGTTTTCGATCGTGTACTTTAGCAACCCGTTCACCGTGCAGCACTGGATCGGTACGATACTGGTGTTCGTTGGTACGATCATCTTCACCGAGGTGGTCGGAAAGGTGCGGTCCGCCTTGGCTCCTGCCGAGGAGAAGAAAAAGGTTAAGTAAGGCGAAACGGTACGCTTAATGCTCAAAGTGAGAGGCTGAAAATGGTGCGGGCCAATCGAAGCATCAGGATAATTAAGGAGAGAGAGAGACGGTGAGAAAGGAAAACAAACACAGGTTACTCTATGATTGAAGAAATAAGGACAATATGATGTTGTGTCGGAGGGTCGGTTTAGAAATTACGTTTTTTTGTTCGAATAGCTTAGCTTACCTTTTTATCTTACTGAAGTGTGGATATTTTTGAACAACGATACAAGCACAGGCTAAACAGTTTTTGGTCCCGTTTTTTAGAATGATACATGGAATATCGCGTACCTCGTGG]




>consensus_4802#1
CGACCCACGCGTCCGGGGCAACGTACTGACGCAGTACGTGTGCATCAGCTCCGTGTACGT
GCTGACGACCGAATGCTCCTCGCTGACGGTGACGCTGGTCGTGACGCTGCGCAAGTTCGT
GTCGCTGCTGTTTTCGATCGTGTACTTTAGCAACCCGTTCACCGTGCAGCACTGGATCGG
TACGATACTGGTGTTCGTTGGTACGATCATCTTCACCGAGGTGGTCGGAAAGGTGCGGTC
CGCCTTGGCTCCTGCCGAGGAGAAGAAAAAGGTTAAGTAAGGCGAAACGGTACGCTTAAT
GCTCAAAGTGAGAGGCTGAAAATGGTGCGGGCCAATCGAAGCATCAGGATAATTAAGGAG
AGAGAGAGACGGTGAGAAAGGAAAACAAACACAGGTTACTCTATGATTGAAGAAATAAGG
ACAATATGATGTTGTGTCGGAGGGTCGGTTTAGAAATTACGTTTTTTTGTTCGAATAGCT
TAGCTTACCTTTTTATCTTACTGAAGTGTGGATATTTTTGAACAACGATACAAGCACAGG
CTAAACAGTTTTTGGTCCCGTTTTTTAGAATGATACATGGAATATCGCGTACCTCGTGG

consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_4802#0      CCGCTCGGCATAGCGCTGCTCACGCTCGCGCTGTTCGTGTCCGCACGGATGGGCCTGTAC 60
consensus_4802#1      ------------------------------------------------------------
                                                                                  

consensus_4802#0      CAGGAGGTGCTGTACAAGCGGTACGGCAAGCACCCGAAGGAGGCCCTGTTCTACACCCAC 120
consensus_4802#1      ------------------------------------------------------------
                                                                                  

consensus_4802#0      CTGCTGCCGCTGCCCTTCTTTGCGCTGCTGGCGGGCAACATCTGGGAGCACGTGCAGCTC 180
consensus_4802#1      ------------------------------------------------------------
                                                                                  

consensus_4802#0      GCCAATGCCAGCCCGCTGCAGCCGATCCCGGCCCTGGGCGTGTCCCTGCCCATCACCTGG 240
consensus_4802#1      --------------------------------------------------------CGAC 4
                                                                              *   

consensus_4802#0      CTGTACCTGCTGGGCAACGTACTGACGCAGTACGTGTGCATCAGCTCCGTGTACGTGCTG 300
consensus_4802#1      CCACGCGTCCGGGGCAACGTACTGACGCAGTACGTGTGCATCAGCTCCGTGTACGTGCTG 64
                      *    * * * *************************************************

consensus_4802#0      ACGACCGAATGCTCCTCGCTGACGGTGACGCTGGTCGTGACGCTGCGCAAGTTCGTGTCG 360
consensus_4802#1      ACGACCGAATGCTCCTCGCTGACGGTGACGCTGGTCGTGACGCTGCGCAAGTTCGTGTCG 124
                      ************************************************************

consensus_4802#0      CTGCTGTTTTCGATCGTGTACTTTAGCAACCCGTTCACCGTGCAGCACTGGATCGGTACG 420
consensus_4802#1      CTGCTGTTTTCGATCGTGTACTTTAGCAACCCGTTCACCGTGCAGCACTGGATCGGTACG 184
                      ************************************************************

consensus_4802#0      ATACTGGTGTTCGTTGGTACGATCATCTTCACCGAGGTGGTCGGAAAGGTGCGGGCCGCC 480
consensus_4802#1      ATACTGGTGTTCGTTGGTACGATCATCTTCACCGAGGTGGTCGGAAAGGTGCGGTCCGCC 244
                      ****************************************************** *****

consensus_4802#0      TTGGCTCCTGCCGAGGAGAAGAAAAAGGTTAAATAAAGCGAAAACGGTACGCTTAATGCT 540
consensus_4802#1      TTGGCTCCTGCCGAGGAGAAGAAAAAGGTTAAGTAAGGCGAAA-CGGTACGCTTAATGCT 303
                      ******************************** *** ****** ****************

consensus_4802#0      CAAAGTGAGAGGCTGAAAACGGTGCGAGCCAATGGAAGCATCAGGATAATTAAGGAGAGA 600
consensus_4802#1      CAAAGTGAGAGGCTGAAAATGGTGCGGGCCAATCGAAGCATCAGGATAATTAAGGAGAGA 363
                      ******************* ****** ****** **************************

consensus_4802#0      GAGAGACGGTGAGAAAGGAAAACAAACACAGGTTGCTCTATAATTGAAGAAATAAGGACA 660
consensus_4802#1      GAGAGACGGTGAGAAAGGAAAACAAACACAGGTTACTCTATGATTGAAGAAATAAGGACA 423
                      ********************************** ****** ******************

consensus_4802#0      ATATGAT----------------------------------------------------- 667
consensus_4802#1      ATATGATGTTGTGTCGGAGGGTCGGTTTAGAAATTACGTTTTTTTGTTCGAATAGCTTAG 483
                      *******                                                     

consensus_4802#0      ------------------------------------------------------------
consensus_4802#1      CTTACCTTTTTATCTTACTGAAGTGTGGATATTTTTGAACAACGATACAAGCACAGGCTA 543
                                                                                  

consensus_4802#0      --------------------------------------------------------
consensus_4802#1      AACAGTTTTTGGTCCCGTTTTTTAGAATGATACATGGAATATCGCGTACCTCGTGG 599