cluster # 4807

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Anopheles gambiae
cluster # 4807 cluster # 4807 Sequences # 3 consensus # 2

see consensus multiple alignment with clustalw

Direct access to contigs :

consensus_4807#0 length = 696 sequences # 1

consensus_4807#1 length = 695 sequences # 2

consensusID : consensus_4807#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 696
fasta sequence

                              [ACTACTACTACTATTACTACTACTACTACTTCTACTACTACTACGAACATATGCTCTCGATCGATCCTTGGCGATCAACTTTAAACGTGGGCTATCGCGTTCGGTACGCCCTCTAGAGAGCAGGTTTCTCATTGCGGCGTGTCGATATAGATGCCCCCGTTTGGTATCACCCGAAAACCTTTTCTACGTCCAGCCTAGGAAGTTATGTCGAATCCATTTACCCTTTCACTAGCGTTCTTATAAATTATACCAAAATTTCCGATTTGATATATATATCGAACAAAAATCAATGCTCATACGTAACGCGACGTAGCTCGGGACAGCACTAGCACTTTCTCTGCGGCACCGAGAAAGCAGTCCTACCAGCAATAGAATAGTGAGATAAGCAAAACACAAAGCATAATAAACGAAAAGAAATTCAATGCAAATTTTAATACACAACCTCGATAGGAACAAACATCGCGACAACATATATAGTAAGCAAGCCTATAATAGTAACGCGTTGCATACGTTGCGACATGTTCTCTGTTGTCTGGGCAAAAAGGCGTTTGTGGCCAAAACCGAGCAAAATGAAATGCGAAAAGGAAAAAAAAACTGTGCTGTTATGATGATGGCGGCATTACCGGGGAGAAGCGTAAACGTAAGAAAATTCTAACGAACCAAAAAAAGAAAGAAAGTAAGAATTTCACTCTCAAT]

[+] EMBL BX602448             [ACTACTACTACTATTACTACTACTACTACTTCTACTACTACTACGAACATATGCTCTCGATCGATCCTTGGCGATCAACTTTAAACGTGGGCTATCGCGTTCGGTACGCCCTCTAGAGAGCAGGTTTCTCATTGCGGCGTGTCGATATAGATGCCCCCGTTTGGTATCACCCGAAAACCTTTTCTACGTCCAGCCTAGGAAGTTATGTCGAATCCATTTACCCTTTCACTAGCGTTCTTATAAATTATACCAAAATTTCCGATTTGATATATATATCGAACAAAAATCAATGCTCATACGTAACGCGACGTAGCTCGGGACAGCACTAGCACTTTCTCTGCGGCACCGAGAAAGCAGTCCTACCAGCAATAGAATAGTGAGATAAGCAAAACACAAAGCATAATAAACGAAAAGAAATTCAATGCAAATTTTAATACACAACCTCGATAGGAACAAACATCGCGACAACATATATAGTAAGCAAGCCTATAATAGTAACGCGTTGCATACGTTGCGACATGTTCTCTGTTGTCTGGGCAAAAAGGCGTTTGTGGCCAAAACCGAGCAAAATGAAATGCGAAAAGGAAAAAAAAACTGTGCTGTTATGATGATGGCGGCATTACCGGGGAGAAGCGTAAACGTAAGAAAATTCTAACGAACCAAAAAAAGAAAGAAAGTAAGAATTTCACTCTCAAT]




>consensus_4807#0
ACTACTACTACTATTACTACTACTACTACTTCTACTACTACTACGAACATATGCTCTCGA
TCGATCCTTGGCGATCAACTTTAAACGTGGGCTATCGCGTTCGGTACGCCCTCTAGAGAG
CAGGTTTCTCATTGCGGCGTGTCGATATAGATGCCCCCGTTTGGTATCACCCGAAAACCT
TTTCTACGTCCAGCCTAGGAAGTTATGTCGAATCCATTTACCCTTTCACTAGCGTTCTTA
TAAATTATACCAAAATTTCCGATTTGATATATATATCGAACAAAAATCAATGCTCATACG
TAACGCGACGTAGCTCGGGACAGCACTAGCACTTTCTCTGCGGCACCGAGAAAGCAGTCC
TACCAGCAATAGAATAGTGAGATAAGCAAAACACAAAGCATAATAAACGAAAAGAAATTC
AATGCAAATTTTAATACACAACCTCGATAGGAACAAACATCGCGACAACATATATAGTAA
GCAAGCCTATAATAGTAACGCGTTGCATACGTTGCGACATGTTCTCTGTTGTCTGGGCAA
AAAGGCGTTTGTGGCCAAAACCGAGCAAAATGAAATGCGAAAAGGAAAAAAAAACTGTGC
TGTTATGATGATGGCGGCATTACCGGGGAGAAGCGTAAACGTAAGAAAATTCTAACGAAC
CAAAAAAAGAAAGAAAGTAAGAATTTCACTCTCAAT

consensusID : consensus_4807#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 2
consensus length = 695
fasta sequence

                              [CCGCGGACGCGTGGGTGCCCCCGTTTGGTATCACCCGAAAACCTTTTCTACGTCCAGCCTAGGAAGTTATGTCGAATCCATTTACCCTTTCACTCGCGTTCTTATAAATTATACCAAAATTTCCGATTTGATATATATATATCGAACAAAAATCAATGCTCATACGTAACGCGACGTAGCTCGGGACAGCACTAGCACTTTCTCTGCGGCACCGAGAAAGCAGTCCTACCAGCAATAGAATAGTGAGATAAGCAAAACACAAAGCATAATAAACGAAAAGAAATTCAATGCAAATTTTAATACACAACCTCGATAGGAACAAACATCGCGACAACATATATAGTAAGCAAGCCTATAATAGTAACGCGTTGCCTACGTTGCGACATGTTCTCTGTTGTCTGTGCAAAAAGGCGTTTGTGGCCAAAACCGAGCAAAATGAAATGCGAAAAGGAAAAAAAAACTGTGCTGTTATGATGATGGCGGCATTAGCGGGGAGAAGCGTAACGTAAAGAAAATTCTAATGAACCAAAAAAAGAAAGAAAGAAAGAATTCAACTCTCAATTTTTACACCAGCTATTGTTGTCATGGGCAATGTGTCACGTCACTCTTCTGTACATAGAAAGCAAACAAAGGGAAAAGAGAAAAGCGGAAAAAGACTCAAGCGGAGTGCGGATACATTTTACTGGTAATGGTAT]

[+] EMBL BM593492             [CCGCGGACGCGTGGGTGCCCCCGTTTGGTATCACCCGAAAACCTTTTCTACGTCCAGCCTAGGAAGTTATGTCGAATCCATTTACCCTTTCACTCGCGTTCTTATAAATTATACCAAAATTTCCGATTTGATATATATATATCGAACAAAAATCAATGCTCATACGTAACGCGACGTAGCTCGGGACAGCACTAGCACTTTCTCTGCGGCACCGAGAAAGCAGTCCTACCAGCAATAGAATAGTGAGATAAGCAAAACACAAAGCATAATAAACGAAAAGAAATTCAATGCAAATTTTAATACACAACCTCGATAGGAACAAACATCGCGACAACATATATAGTAAGCAAGCCTATAATAGTAACGCGTTGCCTACGTTGCGACATGTTCTCTGTTGTCTGTGCAAAAAGGCGTTTGTGGCCAAAACCGAGCAAAATGAAATGCGAAAAGGAAAAAAAAACTGTGCTGTTATGATGATGGCGGCATTAGCGGGGAGAAGCGTAACGTAAAGAAAATTCTAATGAACCAAAAAAAGAAAGAAAGAAAGAATTCAACTCTCAATTTTTACACCAGCTATTGTTGTCATGGGCAATGTGTCACGTCACTCTTCTGTACATAGAAAGCAAACAAAGGGAAAAGAGAAAAGCGGAAAAAGACTCAAGCGGAGTGCGGATACATTTTACTGGTAATGGTAT]
[+] EMBL BM631677             [                                                                                                                                                                                                                                                              ccgCACAAAGCATAATAAACGAAAAGAAATTCAATGCAAATTTTAATACACAACCTCGATAGGAACAAACATCGCGACAACATATATAGTAAGCAAGCCTATAATAGTAACGCGTTGCCTACGTTGCGACATGTTCTCTGTTGTCTGTGCAAAAAGGCGTTTGTGGCCAAAACCGAGCAAAATGAAATGCGAAAAGGAAAAAAAAACTGTGCTGTTATGATGATGGCGGCATTAGCGGGGAGAAGCGTAACGTAAAGAAAATTCTAATGAACC                                                                                                                                                                        ]




>consensus_4807#1
CCGCGGACGCGTGGGTGCCCCCGTTTGGTATCACCCGAAAACCTTTTCTACGTCCAGCCT
AGGAAGTTATGTCGAATCCATTTACCCTTTCACTCGCGTTCTTATAAATTATACCAAAAT
TTCCGATTTGATATATATATATCGAACAAAAATCAATGCTCATACGTAACGCGACGTAGC
TCGGGACAGCACTAGCACTTTCTCTGCGGCACCGAGAAAGCAGTCCTACCAGCAATAGAA
TAGTGAGATAAGCAAAACACAAAGCATAATAAACGAAAAGAAATTCAATGCAAATTTTAA
TACACAACCTCGATAGGAACAAACATCGCGACAACATATATAGTAAGCAAGCCTATAATA
GTAACGCGTTGCCTACGTTGCGACATGTTCTCTGTTGTCTGTGCAAAAAGGCGTTTGTGG
CCAAAACCGAGCAAAATGAAATGCGAAAAGGAAAAAAAAACTGTGCTGTTATGATGATGG
CGGCATTAGCGGGGAGAAGCGTAACGTAAAGAAAATTCTAATGAACCAAAAAAAGAAAGA
AAGAAAGAATTCAACTCTCAATTTTTACACCAGCTATTGTTGTCATGGGCAATGTGTCAC
GTCACTCTTCTGTACATAGAAAGCAAACAAAGGGAAAAGAGAAAAGCGGAAAAAGACTCA
AGCGGAGTGCGGATACATTTTACTGGTAATGGTAT

consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_4807#0      ACTACTACTACTATTACTACTACTACTACTTCTACTACTACTACGAACATATGCTCTCGA 60
consensus_4807#1      ------------------------------------------------------------
                                                                                  

consensus_4807#0      TCGATCCTTGGCGATCAACTTTAAACGTGGGCTATCGCGTTCGGTACGCCCTCTAGAGAG 120
consensus_4807#1      ------------------------------------------------------------
                                                                                  

consensus_4807#0      CAGGTTTCTCATTGCGGCGTGTCGATATAGATGCCCCCGTTTGGTATCACCCGAAAACCT 180
consensus_4807#1      ----------------CCGCGGACGCGTGGGTGCCCCCGTTTGGTATCACCCGAAAACCT 44
                                       ** *      * * *****************************

consensus_4807#0      TTTCTACGTCCAGCCTAGGAAGTTATGTCGAATCCATTTACCCTTTCACTAGCGTTCTTA 240
consensus_4807#1      TTTCTACGTCCAGCCTAGGAAGTTATGTCGAATCCATTTACCCTTTCACTCGCGTTCTTA 104
                      ************************************************** *********

consensus_4807#0      TAAATTATACCAAAATTTCCGATTTGATATATATAT--CGAACAAAAATCAATGCTCATA 298
consensus_4807#1      TAAATTATACCAAAATTTCCGATTTGATATATATATATCGAACAAAAATCAATGCTCATA 164
                      ************************************  **********************

consensus_4807#0      CGTAACGCGACGTAGCTCGGGACAGCACTAGCACTTTCTCTGCGGCACCGAGAAAGCAGT 358
consensus_4807#1      CGTAACGCGACGTAGCTCGGGACAGCACTAGCACTTTCTCTGCGGCACCGAGAAAGCAGT 224
                      ************************************************************

consensus_4807#0      CCTACCAGCAATAGAATAGTGAGATAAGCAAAACACAAAGCATAATAAACGAAAAGAAAT 418
consensus_4807#1      CCTACCAGCAATAGAATAGTGAGATAAGCAAAACACAAAGCATAATAAACGAAAAGAAAT 284
                      ************************************************************

consensus_4807#0      TCAATGCAAATTTTAATACACAACCTCGATAGGAACAAACATCGCGACAACATATATAGT 478
consensus_4807#1      TCAATGCAAATTTTAATACACAACCTCGATAGGAACAAACATCGCGACAACATATATAGT 344
                      ************************************************************

consensus_4807#0      AAGCAAGCCTATAATAGTAACGCGTTGCATACGTTGCGACATGTTCTCTGTTGTCTGGGC 538
consensus_4807#1      AAGCAAGCCTATAATAGTAACGCGTTGCCTACGTTGCGACATGTTCTCTGTTGTCTGTGC 404
                      **************************** **************************** **

consensus_4807#0      AAAAAGGCGTTTGTGGCCAAAACCGAGCAAAATGAAATGCGAAAAGGAAAAAAAAACTGT 598
consensus_4807#1      AAAAAGGCGTTTGTGGCCAAAACCGAGCAAAATGAAATGCGAAAAGGAAAAAAAAACTGT 464
                      ************************************************************

consensus_4807#0      GCTGTTATGATGATGGCGGCATTACCGGGGAGAAGCGTAAACGTAAGAAAATTCTAACGA 658
consensus_4807#1      GCTGTTATGATGATGGCGGCATTAGCGGGGAGAAGCGTAACGTAAAGAAAATTCTAATGA 524
                      ************************ ***************    ************* **

consensus_4807#0      ACCAAAAAAAGAAAGAAAGTAAGAATTTCACTCTCAAT---------------------- 696
consensus_4807#1      ACCAAAAAAAGAAAGAAAGAAAGAATTCAACTCTCAATTTTTACACCAGCTATTGTTGTC 584
                      ******************* *******  *********                      

consensus_4807#0      ------------------------------------------------------------
consensus_4807#1      ATGGGCAATGTGTCACGTCACTCTTCTGTACATAGAAAGCAAACAAAGGGAAAAGAGAAA 644
                                                                                  

consensus_4807#0      ---------------------------------------------------
consensus_4807#1      AGCGGAAAAAGACTCAAGCGGAGTGCGGATACATTTTACTGGTAATGGTAT 695