|
These datas are free for academic use only, please contact me for any other use. Anopheles gambiae see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_481#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 695 fasta sequence
[CCGCCCAAAGGACAGTATTGGACACTCATCAGCCATGGCCAGCAGTGAGTCGGCAGGAAGCTCGTCCGTAATACGCAAAGGTGGCGCTGAACGCGTACATCGAGCGGGGCATCCGGCTGCGCCAGGAGCGAGCCCTCGAGCAATGGACGCACACACGCATGGACGCGCTGGACAGCAGCAACAGCCAGCCGCCGCTCGGCCCGCAGCTCTCTAGTGCCATATCGCGCTGGATCCTGTACGGTACCGTCGTGCCGAGCGTTCACGTCACGCCCAACGGCACGCACCGGCATCATCATCATCATCAGTACGCGACCCACTCGGTCGCCTCCCACTATCACCGTCCGCTCGTGCGCAAACCATCGTACCGGCGCAAAATGTCGTCCACCGAAAGCGGCGCCAGTGGTAGCAGCAGCCCCACGACCAGTCCCAAAGTGTCCTCCTCCCCGGTGCAGCAACATCGCCGTCGGACGGCGGCGGCAGCACCCTCACCGCACCAGTCCCGTCGCCGCACGGGTCGGGATCTGCAGCGTACCGCCACCGCTAACTCGTCACATTCCTCGGCCGGGTCCATTACCTCCATACTGTCCAGCCTGTCGTCGGCGAACAGTGGTGGCAGCCAGCAACAGCGCAAACAACGTCGCATCAAGCGACGAACCGCCCGCAAGTCGGCAACGGCGGAAGCGAAAGGGGCCCGA]
[+] EMBL BM595744 [CCGCCCAAAGGACAGTATTGGACACTCATCAGCCATGGCCAGCAGTGAGTCGGCAGGAAGCTCGTCCGTAATACGCAAAGGTGGCGCTGAACGCGTACATCGAGCGGGGCATCCGGCTGCGCCAGGAGCGAGCCCTCGAGCAATGGACGCACACACGCATGGACGCGCTGGACAGCAGCAACAGCCAGCCGCCGCTCGGCCCGCAGCTCTCTAGTGCCATATCGCGCTGGATCCTGTACGGTACCGTCGTGCCGAGCGTTCACGTCACGCCCAACGGCACGCACCGGCATCATCATCATCATCAGTACGCGACCCACTCGGTCGCCTCCCACTATCACCGTCCGCTCGTGCGCAAACCATCGTACCGGCGCAAAATGTCGTCCACCGAAAGCGGCGCCAGTGGTAGCAGCAGCCCCACGACCAGTCCCAAAGTGTCCTCCTCCCCGGTGCAGCAACATCGCCGTCGGACGGCGGCGGCAGCACCCTCACCGCACCAGTCCCGTCGCCGCACGGGTCGGGATCTGCAGCGTACCGCCACCGCTAACTCGTCACATTCCTCGGCCGGGTCCATTACCTCCATACTGTCCAGCCTGTCGTCGGCGAACAGTGGTGGCAGCCAGCAACAGCGCAAACAACGTCGCATCAAGCGACGAACCGCCCGCAAGTCGGCAACGGCGGAAGCGAAAGGGGCCCGA]
consensusID : consensus_481#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 553 fasta sequence
[CCGGATACAACAAGCGCGCAAAGTTTGGTGAAATTCACGGTTCTAACAACCCCGTGTTTGAGTTTCGTGAGAGAAAGAAGTCGTCGCCGAAAGAAACCGTTAGTGTGTGCTTGTGTGTGTGTGTCTGTTCCTGTTCCTTCCGAGGTCATCCTCTGTCCGCTTCGCAAAAAAGCGGGAAGTCTCGGTAGTGACGGCGGCAGCAGCAGCCAGAGTACTGTTTCGTGCGGTGCGGCAGGAATTTCTCACAGTTTCACCGTGGCGCTGAACGCGTACATCGAGCGGGGCATCCGGCTGCGCCAGGAGCGAGCCCTCGAGCAATGGACGCACACACGCATGGACGCGCTGGACAGCAGCAACAGCCAGCCGCCGCTCGGCCCGCAGCTCTCTAGTGCCATATCGCGCTGGATCCTGTACGGTACCGTCGTGCCGAGCGTTCACGTCACGCCCAACGGCACGCACCGGCATCATCATCATCATCAGTACGCGACCCACTCGGTCGCCTCCCACTATCACCGTCCGCTCGTGCGCAAACCATCGTACCGGCGCAAAATGT]
[+] EMBL BM589878 [CCGGATACAACAAGCGCGCAAAGTTTGGTGAAATTCACGGTTCTAACAACCCCGTGTTTGAGTTTCGTGAGAGAAAGAAGTCGTCGCCGAAAGAAACCGTTAGTGTGTGCTTGTGTGTGTGTGTCTGTTCCTGTTCCTTCCGAGGTCATCCTCTGTCCGCTTCGCAAAAAAGCGGGAAGTCTCGGTAGTGACGGCGGCAGCAGCAGCCAGAGTACTGTTTCGTGCGGTGCGGCAGGAATTTCTCACAGTTTCACCGTGGCGCTGAACGCGTACATCGAGCGGGGCATCCGGCTGCGCCAGGAGCGAGCCCTCGAGCAATGGACGCACACACGCATGGACGCGCTGGACAGCAGCAACAGCCAGCCGCCGCTCGGCCCGCAGCTCTCTAGTGCCATATCGCGCTGGATCCTGTACGGTACCGTCGTGCCGAGCGTTCACGTCACGCCCAACGGCACGCACCGGCATCATCATCATCATCAGTACGCGACCCACTCGGTCGCCTCCCACTATCACCGTCCGCTCGTGCGCAAACCATCGTACCGGCGCAAAATGT]
consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment
consensus_481#0 ------------------------------------------------------------
consensus_481#1 CCGGATACAACAAGCGCGCAAAGTTTGGTGAAATTCACGGTTCTAACAACCCCGTGTTTG 60
consensus_481#0 ------------------------------------------------------------
consensus_481#1 AGTTTCGTGAGAGAAAGAAGTCGTCGCCGAAAGAAACCGTTAGTGTGTGCTTGTGTGTGT 120
consensus_481#0 -----------------------------------------CCGCCCAAA---GGACAGT 16
consensus_481#1 GTGTCTGTTCCTGTTCCTTCCGAGGTCATCCTCTGTCCGCTTCGCAAAAAAGCGGGAAGT 180
*** *** ** ***
consensus_481#0 ATTGGACACT-CATCAGCCATGGCCAGCAGTGAGTCGG--CAGGAAGCTCGTCCGTAATA 73
consensus_481#1 CTCGGTAGTGACGGCGGCAGCAGCAGCCAGAGTACTGTTTCGTGCGGTGCGGCAGGAATT 240
* ** * * ** ** *** * * * * * ** * * ***
consensus_481#0 -CGCAAAG-------GTGGCGCTGAACGCGTACATCGAGCGGGGCATCCGGCTGCGCCAG 125
consensus_481#1 TCTCACAGTTTCACCGTGGCGCTGAACGCGTACATCGAGCGGGGCATCCGGCTGCGCCAG 300
* ** ** *********************************************
consensus_481#0 GAGCGAGCCCTCGAGCAATGGACGCACACACGCATGGACGCGCTGGACAGCAGCAACAGC 185
consensus_481#1 GAGCGAGCCCTCGAGCAATGGACGCACACACGCATGGACGCGCTGGACAGCAGCAACAGC 360
************************************************************
consensus_481#0 CAGCCGCCGCTCGGCCCGCAGCTCTCTAGTGCCATATCGCGCTGGATCCTGTACGGTACC 245
consensus_481#1 CAGCCGCCGCTCGGCCCGCAGCTCTCTAGTGCCATATCGCGCTGGATCCTGTACGGTACC 420
************************************************************
consensus_481#0 GTCGTGCCGAGCGTTCACGTCACGCCCAACGGCACGCACCGGCATCATCATCATCATCAG 305
consensus_481#1 GTCGTGCCGAGCGTTCACGTCACGCCCAACGGCACGCACCGGCATCATCATCATCATCAG 480
************************************************************
consensus_481#0 TACGCGACCCACTCGGTCGCCTCCCACTATCACCGTCCGCTCGTGCGCAAACCATCGTAC 365
consensus_481#1 TACGCGACCCACTCGGTCGCCTCCCACTATCACCGTCCGCTCGTGCGCAAACCATCGTAC 540
************************************************************
consensus_481#0 CGGCGCAAAATGTCGTCCACCGAAAGCGGCGCCAGTGGTAGCAGCAGCCCCACGACCAGT 425
consensus_481#1 CGGCGCAAAATGT----------------------------------------------- 553
*************
consensus_481#0 CCCAAAGTGTCCTCCTCCCCGGTGCAGCAACATCGCCGTCGGACGGCGGCGGCAGCACCC 485
consensus_481#1 ------------------------------------------------------------
consensus_481#0 TCACCGCACCAGTCCCGTCGCCGCACGGGTCGGGATCTGCAGCGTACCGCCACCGCTAAC 545
consensus_481#1 ------------------------------------------------------------
consensus_481#0 TCGTCACATTCCTCGGCCGGGTCCATTACCTCCATACTGTCCAGCCTGTCGTCGGCGAAC 605
consensus_481#1 ------------------------------------------------------------
consensus_481#0 AGTGGTGGCAGCCAGCAACAGCGCAAACAACGTCGCATCAAGCGACGAACCGCCCGCAAG 665
consensus_481#1 ------------------------------------------------------------
consensus_481#0 TCGGCAACGGCGGAAGCGAAAGGGGCCCGA 695
consensus_481#1 ------------------------------
|
| Copyright Wed Dec 3 12:11:56 CET 2003 Hubert Wassner (hubert.wassner@noos.fr) | ||||