These datas are free for academic use only, please contact me for any other use. Anopheles gambiae see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_4815#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 678 fasta sequence [CACCACCAACAACACCACCAAAAAGCTGCCTTCACAAGCGAACGCATCCGTCCGCACGCGCACTCCTTCGCCCCGGGGAAGCATTGGCAACGGGTCCCTACCGAACGGCACGGTTCCGGGCAAGGGAACGGCCACCACGACGACGGCAGGCACAAAGCCGAAAACGGCCGCCAAACCAACGGCGGCCGCCATCGGCAATGGGAAGCTTCTGACGGCGGCCGCACGGCCCGGTCCGGGCAAAGTTTCCAACGTGGCGTCGCTGCAGCAAAAGTTTGAAAGTAAAAAGTAGGAATGTCCCGGATGCAAGGACGCAAAGCAAAGCAAAGCAGCAGACACAAATCATGTTCCTTTCGCGAAGGATTCGGATGCTCTCCCCCCAAGAACTGCCGTAAGAATGTTGTGCTGAGCGCGTTAATCAGTAGCTTTTAATTATGCCGACGATACACGAGTACACGAATTCCGTGACCGAAAACAACTAGTTTTGCAGAGCGTTTTGAAGAATAGATTTTTTTTTGTAATATAACAATTATTTATACTTTGCGTCCGTTAGGATGCACAGGTGGTACGAACTTCGATAGGACCAATCAATTTGTTATATTAATTAGAGTGTCCCCTTGGAAGTCCAGTCGAGCGATTTTNAATCGGTTCCCAATGGACGGTTGTTTTTGCTTTGGCCTC] [+] EMBL BX622698 [CACCACCAACAACACCACCAAAAAGCTGCCTTCACAAGCGAACGCATCCGTCCGCACGCGCACTCCTTCGCCCCGGGGAAGCATTGGCAACGGGTCCCTACCGAACGGCACGGTTCCGGGCAAGGGAACGGCCACCACGACGACGGCAGGCACAAAGCCGAAAACGGCCGCCAAACCAACGGCGGCCGCCATCGGCAATGGGAAGCTTCTGACGGCGGCCGCACGGCCCGGTCCGGGCAAAGTTTCCAACGTGGCGTCGCTGCAGCAAAAGTTTGAAAGTAAAAAGTAGGAATGTCCCGGATGCAAGGACGCAAAGCAAAGCAAAGCAGCAGACACAAATCATGTTCCTTTCGCGAAGGATTCGGATGCTCTCCCCCCAAGAACTGCCGTAAGAATGTTGTGCTGAGCGCGTTAATCAGTAGCTTTTAATTATGCCGACGATACACGAGTACACGAATTCCGTGACCGAAAACAACTAGTTTTGCAGAGCGTTTTGAAGAATAGATTTTTTTTTGTAATATAACAATTATTTATACTTTGCGTCCGTTAGGATGCACAGGTGGTACGAACTTCGATAGGACCAATCAATTTGTTATATTAATTAGAGTGTCCCCTTGGAAGTCCAGTCGAGCGATTTTNAATCGGTTCCCAATGGACGGTTGTTTTTGCTTTGGCCTC] consensusID : consensus_4815#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 2 consensus length = 672 fasta sequence [CCGCCCACGCGTCCGAAAGTTTGAAAGTAAAAAGTAGGAATGTCCCGGATGCAAGGACGCAAAGCAAAGCAGAGCAGCAGACACAAATCATGTTCCTTTCGCGAAGGATTCGGATGCTCTCCCCCCAAGAACTGCCGTAAGAATGTTGTGCTGAGCGCGTTAATCAGTAGCTTTTAATCATGCCGACGATACACGAGTACACGAATTCCGTGACCGAAAACAACTAGTTTTGCAGAGCG-TTTTGACGAAAACGGCAAAGGCGAATAGATTTTTTCTTTTGTAATATAACAATTATTTATACTTTGCGTCCGTTAGGATGCACAGGTGGTACGAACTTCGATAGGACCAATCAATTTGTTATATTAATTAGAGTGTCCCCTTGGAAGTCCAGTCGAGCGATTTTGAATCGGTTCCCAATGGAGGGTTGTTTTGCTTGGCCTCCTTATCATAATGCAAAACTGAAGCGTGGCGTGTGTGTAAATGTATTGATGTGTTCAGTAAAGTGTGCTACGAAGGCGCCAAAGAAATGCAATCCAATCGGTGCACCGCAGCGAGGAGAAAGAAGGGCGAAATAGAACCTACGTAAAGAAATGTCGTCAAATAGGGTCAAATCTTAGTGAGTGTATTTAGTGGGATGGGATCTATTTTGTTAAAGATATGGTCATACAATCA] [+] EMBL BM584068 [CCGCCCACGCGTCCGAAAGTTTGAAAGTAAAAAGTAGGAATGTCCCGGATGCAAGGACGCAAAGCAAAGCAGAGCAGCAGACACAAATCATGTTCCTTTCGCGAAGGATTCGGATGCTCTCCCCCCAAGAACTGCCGTAAGAATGTTGTGCTGAGCGCGTTAATCAGTAGCTTTTAATCATGCCGACGATACACGAGTACACGAATTCCGTGACCGAAAACAACTAGTTTTGCAGAGCG TTTTGACGAAAACGGCAAAGGCGAATAGATTTTTTCTTTTGTAATATAACAATTATTTATACTTTGCGTCCGTTAGGATGCACAGGTGGTACGAACTTCGATAGGACCAATCAATTTGTTATATTAATTAGAGTGTCCCCTTGGAAGTCCAGTCGAGCGATTTTGAATCGGTTCCCAATGGAGGGTTGTTTTGCTTGGCCTCCTTATCATAATGCAAAACTGAAGCGTGGCGTGTGTGTAAATGTATTGATGTGTTCAGTAAAGTGTGCTACGAAGGCGCCAAAGAAATGCAATCCAATCGGTGCACCGCAGCGAGGAGAAAGAAGGGCGAAATAGAACCTACGTAAAGAAATGTCGTCAAATAGGGTCAAATCTTAGTGAGTGTATTTAGTGGGATGGGATCTATTTTGTTAAAGATATGGTCATACAATCA] [+] EMBL BX625350 [ GCGAAGGATTCGGATGCTCT CCCCCAAGAACTGCCGCAAGAATGTTATGCTGAGCGCGTTAATCAGTAGCTTTTAATTATGCCGACGATACACGAGTACACGAATTCCGTGACCGAAAATAACTAGNTTTGCAGAGCGTTTTTGAAGAAAACGGCAAAGGCGAAT ] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_4815#0 CACCACCAACAACACCACCAAAAAGCTGCCTTCACAAGCGAACGCATCCGTCCGCACGCG 60 consensus_4815#1 ------------------------------------------------------------ consensus_4815#0 CACTCCTTCGCCCCGGGGAAGCATTGGCAACGGGTCCCTACCGAACGGCACGGTTCCGGG 120 consensus_4815#1 ------------------------------------------------------------ consensus_4815#0 CAAGGGAACGGCCACCACGACGACGGCAGGCACAAAGCCGAAAACGGCCGCCAAACCAAC 180 consensus_4815#1 ------------------------------------------------------------ consensus_4815#0 GGCGGCCGCCATCGGCAATGGGAAGCTTCTGACGGCGGCCGCACGGCCCGGTCCGGGCAA 240 consensus_4815#1 ------------------------------------------------------------ consensus_4815#0 AGTTTCCAACGTGGCGTCGCTGCAGC-AAAAGTTTGAAAGTAAAAAGTAGGAATGTCCCG 299 consensus_4815#1 -------------CCGCCCACGCGTCCGAAAGTTTGAAAGTAAAAAGTAGGAATGTCCCG 47 ** * ** * ******************************** consensus_4815#0 GATGCAAGGACGCAAAGCAAAGCAAAGCAGCAGACACAAATCATGTTCCTTTCGCGAAGG 359 consensus_4815#1 GATGCAAGGACGCAAAGCAAAGCAGAGCAGCAGACACAAATCATGTTCCTTTCGCGAAGG 107 ************************ *********************************** consensus_4815#0 ATTCGGATGCTCTCCCCCCAAGAACTGCCGTAAGAATGTTGTGCTGAGCGCGTTAATCAG 419 consensus_4815#1 ATTCGGATGCTCTCCCCCCAAGAACTGCCGTAAGAATGTTGTGCTGAGCGCGTTAATCAG 167 ************************************************************ consensus_4815#0 TAGCTTTTAATTATGCCGACGATACACGAGTACACGAATTCCGTGACCGAAAACAACTAG 479 consensus_4815#1 TAGCTTTTAATCATGCCGACGATACACGAGTACACGAATTCCGTGACCGAAAACAACTAG 227 *********** ************************************************ consensus_4815#0 TTTTGCAGAGCGTTTTGAAGAA---------------TAGATTTTTT--TTTGTAATATA 522 consensus_4815#1 TTTTGCAGAGCGTTTTGACGAAAACGGCAAAGGCGAATAGATTTTTTCTTTTGTAATATA 287 ****************** *** ********** *********** consensus_4815#0 ACAATTATTTATACTTTGCGTCCGTTAGGATGCACAGGTGGTACGAACTTCGATAGGACC 582 consensus_4815#1 ACAATTATTTATACTTTGCGTCCGTTAGGATGCACAGGTGGTACGAACTTCGATAGGACC 347 ************************************************************ consensus_4815#0 AATCAATTTGTTATATTAATTAGAGTGTCCCCTTGGAAGTCCAGTCGAGCGATTTTNAAT 642 consensus_4815#1 AATCAATTTGTTATATTAATTAGAGTGTCCCCTTGGAAGTCCAGTCGAGCGATTTTGAAT 407 ******************************************************** *** consensus_4815#0 CGGTTCCCAATGGACGGTTGTTTTTGCTTTGGCCTC------------------------ 678 consensus_4815#1 CGGTTCCCAATGGAGGGTTGTTTTG--CTTGGCCTCCTTATCATAATGCAAAACTGAAGC 465 ************** ********* ******** consensus_4815#0 ------------------------------------------------------------ consensus_4815#1 GTGGCGTGTGTGTAAATGTATTGATGTGTTCAGTAAAGTGTGCTACGAAGGCGCCAAAGA 525 consensus_4815#0 ------------------------------------------------------------ consensus_4815#1 AATGCAATCCAATCGGTGCACCGCAGCGAGGAGAAAGAAGGGCGAAATAGAACCTACGTA 585 consensus_4815#0 ------------------------------------------------------------ consensus_4815#1 AAGAAATGTCGTCAAATAGGGTCAAATCTTAGTGAGTGTATTTAGTGGGATGGGATCTAT 645 consensus_4815#0 --------------------------- consensus_4815#1 TTTGTTAAAGATATGGTCATACAATCA 672 |
Copyright Wed Dec 3 12:11:56 CET 2003 Hubert Wassner (hubert.wassner@noos.fr) | ||||