cluster # 4843

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Anopheles gambiae
cluster # 4843 cluster # 4843 Sequences # 4 consensus # 4

see consensus multiple alignment with clustalw

Direct access to contigs :

consensus_4843#0 length = 836 sequences # 1
consensus_4843#1 length = 764 sequences # 1

consensus_4843#2 length = 344 sequences # 1
consensus_4843#3 length = 244 sequences # 1

consensusID : consensus_4843#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 836
fasta sequence

                              [CTTGAATGATTCCCAGTAAATTTCTTAAAAGAGCTAACGTGTTCGAGTAACAGTAGTTCGAAATACACACACACACACACTCACACATCTACTCCCAGTCTTTGCGTATATTGCTCGCCATATCTTCCCTCGGTACGTCGTGGTTGTGCGCATTTTTCAACACACACTGTTCAGGATTTGAAACCGAGGTGATGGCACGTGCTTTGCAGTTGGTGTGCCACTTGCTACATTTCCAGTACATTTTACCGCCATAGCAGTTGTTCTTGATGTAGCGATGTCCATCGTACATCAGCACATTGTTCCCACGGCCATTGGTGTACTGTATCTTGTTCGCATCCACCGCAACGGGTTTGTTAAATTTGCGAACCGTAAGTGTCGGTGAACGGTGAGCGTTATCCGTCTTTGCTGAACTCTTATTGAGTTTCAGCTTGGGTTGTTTTGGTTGTCCGTGTAGCTGTAACTTGAAGTACGGATTGCGCTCGTTATCCATCTTCAACTGAAAGTGAGTCACGTTTGGCGACTGTTTCCCTTCACGCGCCTTTCTGATATCTTGTGTCGAAATTTCCGTCGCATTTCCGCCGTCCGATGTGTACGAGTCCACGAATCCAGATACGCCAGGTTTCGCTCCTTCCTCGCCCTCCGTCAAGTAGGATTCTTCGTACTTGCCCATGGCCATGTCACCGTATGTGTCGTCTTCCACGTAGTTTCCATCATCGTCGGCATCACCTTGGTCGTGTTCCGAGAGCTTCTGTTCCTGTTCCGTTTCAGCGTCCACCGTTTCGATCTCGGCCGTCTCATCAGTGTAGTCCGGTTCAGCCTTGGGATTTATCGATTCG]

[+] EMBL CNS09CR2             [CTTGAATGATTCCCAGTAAATTTCTTAAAAGAGCTAACGTGTTCGAGTAACAGTAGTTCGAAATACACACACACACACACTCACACATCTACTCCCAGTCTTTGCGTATATTGCTCGCCATATCTTCCCTCGGTACGTCGTGGTTGTGCGCATTTTTCAACACACACTGTTCAGGATTTGAAACCGAGGTGATGGCACGTGCTTTGCAGTTGGTGTGCCACTTGCTACATTTCCAGTACATTTTACCGCCATAGCAGTTGTTCTTGATGTAGCGATGTCCATCGTACATCAGCACATTGTTCCCACGGCCATTGGTGTACTGTATCTTGTTCGCATCCACCGCAACGGGTTTGTTAAATTTGCGAACCGTAAGTGTCGGTGAACGGTGAGCGTTATCCGTCTTTGCTGAACTCTTATTGAGTTTCAGCTTGGGTTGTTTTGGTTGTCCGTGTAGCTGTAACTTGAAGTACGGATTGCGCTCGTTATCCATCTTCAACTGAAAGTGAGTCACGTTTGGCGACTGTTTCCCTTCACGCGCCTTTCTGATATCTTGTGTCGAAATTTCCGTCGCATTTCCGCCGTCCGATGTGTACGAGTCCACGAATCCAGATACGCCAGGTTTCGCTCCTTCCTCGCCCTCCGTCAAGTAGGATTCTTCGTACTTGCCCATGGCCATGTCACCGTATGTGTCGTCTTCCACGTAGTTTCCATCATCGTCGGCATCACCTTGGTCGTGTTCCGAGAGCTTCTGTTCCTGTTCCGTTTCAGCGTCCACCGTTTCGATCTCGGCCGTCTCATCAGTGTAGTCCGGTTCAGCCTTGGGATTTATCGATTCG]




>consensus_4843#0
CTTGAATGATTCCCAGTAAATTTCTTAAAAGAGCTAACGTGTTCGAGTAACAGTAGTTCG
AAATACACACACACACACACTCACACATCTACTCCCAGTCTTTGCGTATATTGCTCGCCA
TATCTTCCCTCGGTACGTCGTGGTTGTGCGCATTTTTCAACACACACTGTTCAGGATTTG
AAACCGAGGTGATGGCACGTGCTTTGCAGTTGGTGTGCCACTTGCTACATTTCCAGTACA
TTTTACCGCCATAGCAGTTGTTCTTGATGTAGCGATGTCCATCGTACATCAGCACATTGT
TCCCACGGCCATTGGTGTACTGTATCTTGTTCGCATCCACCGCAACGGGTTTGTTAAATT
TGCGAACCGTAAGTGTCGGTGAACGGTGAGCGTTATCCGTCTTTGCTGAACTCTTATTGA
GTTTCAGCTTGGGTTGTTTTGGTTGTCCGTGTAGCTGTAACTTGAAGTACGGATTGCGCT
CGTTATCCATCTTCAACTGAAAGTGAGTCACGTTTGGCGACTGTTTCCCTTCACGCGCCT
TTCTGATATCTTGTGTCGAAATTTCCGTCGCATTTCCGCCGTCCGATGTGTACGAGTCCA
CGAATCCAGATACGCCAGGTTTCGCTCCTTCCTCGCCCTCCGTCAAGTAGGATTCTTCGT
ACTTGCCCATGGCCATGTCACCGTATGTGTCGTCTTCCACGTAGTTTCCATCATCGTCGG
CATCACCTTGGTCGTGTTCCGAGAGCTTCTGTTCCTGTTCCGTTTCAGCGTCCACCGTTT
CGATCTCGGCCGTCTCATCAGTGTAGTCCGGTTCAGCCTTGGGATTTATCGATTCG

consensusID : consensus_4843#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 764
fasta sequence

                              [GACCGTTTTATTCCTTCCTCACAAGCTTCCGCCCTTCGAAAGCAATACACGCGCAAATCTTATGGAGAAAATAACTCGCCGGACGCACACCACCGGCCAGCTCGCTGCGTGGAGCACTTGAACCCGATGCAGGGCGCGGATGAAGTACGAGCACACAACACAAACCGGCAAGCCAGCGGAAGGCGCGCACACGGCCGAGCGCGTTCGCGAATTTTTTAAGTAAATCCTTAACGGTAAGACTTCTGGTAGCGGGCGCGGGCACCTGGACCGCCGAACTTCTTCGGCTCGCAGCGACGCGGATCCGCAACCAGCAGCGTTCGGTCGTACTGGGTCAGGATGTCCTTCAGCTCCTTGCGCGACGCCTCAACGACGTACTTCTGGTAGAAGGAGAACAGCGCCTTGGAGATGGCCTGCCGGATGGCGTAGATCTGTGCTACGTGACCCCCACCGCTCACGCGGATTCGGATGTCGACGCCGGCGAACTTTTCCTTGCCGAGCAGCAGCAGCGGCTCCTGCAGCTTGTAGCGCAGGATCTTCGGCTCGATCTGGTCCAGCGGGCGGCCATTGATACGCAGCAGTACCTTTCCGCGCTTGCAGTTTGCAACGGCGGTGGCAGTTTTCTTGCGTTCGAAGACCTGGACTGCGTTAACTTTCTCCTTGCGTGCTTTCGGCATGTTTGATTCGTAGCACAACAAAACTAGAAAAGGAAAGGCCAGCCAGTTGGCCAACAGTTCTCGAGGAATTCCGCAGCCTTTAGAGTTTTT]

[+] EMBL CNS09063             [GACCGTTTTATTCCTTCCTCACAAGCTTCCGCCCTTCGAAAGCAATACACGCGCAAATCTTATGGAGAAAATAACTCGCCGGACGCACACCACCGGCCAGCTCGCTGCGTGGAGCACTTGAACCCGATGCAGGGCGCGGATGAAGTACGAGCACACAACACAAACCGGCAAGCCAGCGGAAGGCGCGCACACGGCCGAGCGCGTTCGCGAATTTTTTAAGTAAATCCTTAACGGTAAGACTTCTGGTAGCGGGCGCGGGCACCTGGACCGCCGAACTTCTTCGGCTCGCAGCGACGCGGATCCGCAACCAGCAGCGTTCGGTCGTACTGGGTCAGGATGTCCTTCAGCTCCTTGCGCGACGCCTCAACGACGTACTTCTGGTAGAAGGAGAACAGCGCCTTGGAGATGGCCTGCCGGATGGCGTAGATCTGTGCTACGTGACCCCCACCGCTCACGCGGATTCGGATGTCGACGCCGGCGAACTTTTCCTTGCCGAGCAGCAGCAGCGGCTCCTGCAGCTTGTAGCGCAGGATCTTCGGCTCGATCTGGTCCAGCGGGCGGCCATTGATACGCAGCAGTACCTTTCCGCGCTTGCAGTTTGCAACGGCGGTGGCAGTTTTCTTGCGTTCGAAGACCTGGACTGCGTTAACTTTCTCCTTGCGTGCTTTCGGCATGTTTGATTCGTAGCACAACAAAACTAGAAAAGGAAAGGCCAGCCAGTTGGCCAACAGTTCTCGAGGAATTCCGCAGCCTTTAGAGTTTTT]




>consensus_4843#1
GACCGTTTTATTCCTTCCTCACAAGCTTCCGCCCTTCGAAAGCAATACACGCGCAAATCT
TATGGAGAAAATAACTCGCCGGACGCACACCACCGGCCAGCTCGCTGCGTGGAGCACTTG
AACCCGATGCAGGGCGCGGATGAAGTACGAGCACACAACACAAACCGGCAAGCCAGCGGA
AGGCGCGCACACGGCCGAGCGCGTTCGCGAATTTTTTAAGTAAATCCTTAACGGTAAGAC
TTCTGGTAGCGGGCGCGGGCACCTGGACCGCCGAACTTCTTCGGCTCGCAGCGACGCGGA
TCCGCAACCAGCAGCGTTCGGTCGTACTGGGTCAGGATGTCCTTCAGCTCCTTGCGCGAC
GCCTCAACGACGTACTTCTGGTAGAAGGAGAACAGCGCCTTGGAGATGGCCTGCCGGATG
GCGTAGATCTGTGCTACGTGACCCCCACCGCTCACGCGGATTCGGATGTCGACGCCGGCG
AACTTTTCCTTGCCGAGCAGCAGCAGCGGCTCCTGCAGCTTGTAGCGCAGGATCTTCGGC
TCGATCTGGTCCAGCGGGCGGCCATTGATACGCAGCAGTACCTTTCCGCGCTTGCAGTTT
GCAACGGCGGTGGCAGTTTTCTTGCGTTCGAAGACCTGGACTGCGTTAACTTTCTCCTTG
CGTGCTTTCGGCATGTTTGATTCGTAGCACAACAAAACTAGAAAAGGAAAGGCCAGCCAG
TTGGCCAACAGTTCTCGAGGAATTCCGCAGCCTTTAGAGTTTTT

consensusID : consensus_4843#2
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 344
fasta sequence

                              [CAGAATCGCCCGAGGTTAGAATTGAATAGTTCTTTATTGCTGGACACTGGGGTGACGCAAAAGTGAGAGCCACAATCACGGAAGCATCCGGGTACTAGGCCAGCCCTCAGTATGTCTGTCCCTGTGAGCTGCGTACTCTGTCGATAGCATGAACAACATCGACAGCAGCCATCGGCATCGGCGGGCATGGTCTAACCACGTCTCCTCCAACGGCCGCCATGATGACGATGGCGGACTGGACGGAAAGACGATGAACACACGGGGCCAATGATAGACGAGATGANGAGCNCCCGCGANCAAACAGTATCCATATGCCGGCACGCGAACCACGGNAANCGGAATAG]

[+] EMBL AL929702             [CAGAATCGCCCGAGGTTAGAATTGAATAGTTCTTTATTGCTGGACACTGGGGTGACGCAAAAGTGAGAGCCACAATCACGGAAGCATCCGGGTACTAGGCCAGCCCTCAGTATGTCTGTCCCTGTGAGCTGCGTACTCTGTCGATAGCATGAACAACATCGACAGCAGCCATCGGCATCGGCGGGCATGGTCTAACCACGTCTCCTCCAACGGCCGCCATGATGACGATGGCGGACTGGACGGAAAGACGATGAACACACGGGGCCAATGATAGACGAGATGANGAGCNCCCGCGANCAAACAGTATCCATATGCCGGCACGCGAACCACGGNAANCGGAATAG]




>consensus_4843#2
CAGAATCGCCCGAGGTTAGAATTGAATAGTTCTTTATTGCTGGACACTGGGGTGACGCAA
AAGTGAGAGCCACAATCACGGAAGCATCCGGGTACTAGGCCAGCCCTCAGTATGTCTGTC
CCTGTGAGCTGCGTACTCTGTCGATAGCATGAACAACATCGACAGCAGCCATCGGCATCG
GCGGGCATGGTCTAACCACGTCTCCTCCAACGGCCGCCATGATGACGATGGCGGACTGGA
CGGAAAGACGATGAACACACGGGGCCAATGATAGACGAGATGANGAGCNCCCGCGANCAA
ACAGTATCCATATGCCGGCACGCGAACCACGGNAANCGGAATAG

consensusID : consensus_4843#3
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 244
fasta sequence

                              [CCTTGGCGGCCGTGGGCGCTTGCTTGGTCGGCTGGCCTCGGTCGTCGCCCAGCCGATCCTGTCTGGTCACTCGGTGGTCGTGGTGCGCTGCGCGGGCCTTCCGCTGTCGGGCCATTTCTTCCGCCACACGTTCAAGTTCTTGGCCTACCTGCGGCCCCGCTGTCACGTCAACCCGGCACGCGGTCCATTCCATTTCCGCGCTCCGCGCCGTATGTTGTGGCAGGCCATCCGTGGCATGGTCCCC]

[+] EMBL CNS08ZNB             [CCTTGGCGGCCGTGGGCGCTTGCTTGGTCGGCTGGCCTCGGTCGTCGCCCAGCCGATCCTGTCTGGTCACTCGGTGGTCGTGGTGCGCTGCGCGGGCCTTCCGCTGTCGGGCCATTTCTTCCGCCACACGTTCAAGTTCTTGGCCTACCTGCGGCCCCGCTGTCACGTCAACCCGGCACGCGGTCCATTCCATTTCCGCGCTCCGCGCCGTATGTTGTGGCAGGCCATCCGTGGCATGGTCCCC]




>consensus_4843#3
CCTTGGCGGCCGTGGGCGCTTGCTTGGTCGGCTGGCCTCGGTCGTCGCCCAGCCGATCCT
GTCTGGTCACTCGGTGGTCGTGGTGCGCTGCGCGGGCCTTCCGCTGTCGGGCCATTTCTT
CCGCCACACGTTCAAGTTCTTGGCCTACCTGCGGCCCCGCTGTCACGTCAACCCGGCACG
CGGTCCATTCCATTTCCGCGCTCCGCGCCGTATGTTGTGGCAGGCCATCCGTGGCATGGT
CCCC

consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_4843#2      ------------------------------------------------------------
consensus_4843#3      ------------------------------------------------------------
consensus_4843#1      -----------GACCGTTTTATTCCTTCCTCACAAGCTTCCGCCCTTCGAAAGCAATACA 49
consensus_4843#0      CTTGAATGATTCCCAGTAAATTTCTTAAAAGAGCTAACGTGTTCGAGTAACAGTAGTTCG 60
                                                                                  

consensus_4843#2      ------------------------------------------------------------
consensus_4843#3      ------------------------------------------------------------
consensus_4843#1      CGCGCAAATCTTATGGAGAAAATAACTCGCCGGACGCACACCACCGGCCAGCTCGCTGCG 109
consensus_4843#0      AAATACACACACACACACACTCACACATCTACTCCCAGTCTTTGCGTATATTGCTCGCCA 120
                                                                                  

consensus_4843#2      ------------------------------------------------------------
consensus_4843#3      ------------------------------------------------------------
consensus_4843#1      TGGAGCACTTGAACCCGATGCAGGGCGCGGATGAAGTACGAGCACACAACACAAACCGGC 169
consensus_4843#0      TATCTTCCCTCGGTACGTCGTGGTTGTGCGCATTTTTCAACACACACTGTTCAGGATTTG 180
                                                                                  

consensus_4843#2      ------------------------------------------------------------
consensus_4843#3      ------------------------------------------------------------
consensus_4843#1      AAGCCAGCGGAAGGCGCGCACACGGCCGAGCGCGTTCGCGAATTTTTTAAGTAAATCCTT 229
consensus_4843#0      AAACCGAGGTGATGGCACGTGCTTTGCAGTTGGTGTGCCACTTGCTACATTTCCAGTACA 240
                                                                                  

consensus_4843#2      --------------------------------------------------------CAGA 4
consensus_4843#3      ------------------------------------------------------------
consensus_4843#1      AACGGTAAGACTTCTGGTAGCGGGCGCGGGCACCTGGACCGCCGAACTTCTTCGGCTCGC 289
consensus_4843#0      TTTTACCGCCATAGCAGTTGTTCTTGATGTAGCGATGTCCATCGTACATCAGCACATTGT 300
                                                                                  

consensus_4843#2      ATCGCCCGAGGTTAGAATTGAATAGTTCTTTATTGCTGGACACTGGGGTGACGCAAAAGT 64
consensus_4843#3      ------------------------------------------------------------
consensus_4843#1      AGCGACGCGGATCCGCAACCAGCAGCGTTCGGTCGTACTGGGTCAGGATGTCCTTCAGCT 349
consensus_4843#0      TCCCACGGCCATTGGTGTACTGTATCTTGTTCGCATCCACCGCAACGGGTTTGTTAAATT 360
                                                                                  

consensus_4843#2      ----GAGAGCCACAATCACGGAAGCATCCGGGTACTAGGCCAGC-CCTCAGTATGTCTGT 119
consensus_4843#3      -----------------------CCTTGGCGGCCGTGGGCGCTT-GCTTGGT-CGGCTGG 35
consensus_4843#1      CCTTGCGCGACGCCTCAACGACGTACTTCTGGTAGAAGGAGAACAGCGCCTTGGAGATGG 409
consensus_4843#0      TGCGAACCGTAAGTGTCGGTGAACGGTGAGCGTTATCCGTCTTTGCTGAACTCTTATTGA 420
                                                *    *      *            *     ** 

consensus_4843#2      CCCTGTGAGCTGCGTAC-TCTGTCGATAGCATGAACAACATCG-----ACAG-------C 166
consensus_4843#3      CCTCGGTCGTCGCCCAG-CCGATC--CTGTCTGGTCAC--TCG-----GTGG-------T 78
consensus_4843#1      CCTGCCGGATGGCGTAGATCTGTG--CTACGTGACCCCCACCGCTCACGCGGATT----C 463
consensus_4843#0      GTTTCAGCTTGGGTTGTTTTGGTTGTCCGTGTAGCTGTAACTTGAAGTACGGATTGCGCT 480
                                 *          *        *                   *        

consensus_4843#2      AGCCATCGGCATCG--------GCGGG---CATGGTCTAACCACGTCTCCTCCAACGGCC 215
consensus_4843#3      CGTGGTGCGC-TGC--------GCGGG---CCTTCCGCTGTCGGGCCATTTCTTCCGCCA 126
consensus_4843#1      GGATGTCGACGCCG--------GCGAA---CTTTTCCTTGCCGAG-CAGCAGCAGCGGCT 511
consensus_4843#0      CGTTATCCATCTTCAACTGAAAGTGAGTCACGTTTGGCGACTGTTTCCCTTCACGCGCCT 540
                       *   *                * *     * *             *        ** * 

consensus_4843#2      GCC--ATGATGACGATGGCGGACTGG-ACGGAAAGACGATGAACA-CACG---GGGCCAA 268
consensus_4843#3      --C--ACGTTCAAGTTCTTGGCCTAC-CTGCGGCCCCGCTGT-CA-CGTC---AACCC-- 174
consensus_4843#1      CCT--GCAGCTTGTAGCGCAGGATCT-TCGGCTCGATCTGGTCCAGCGGG---CGGCCAT 565
consensus_4843#0      TTCTGATATCTTGTGTCGAAATTTCCGTCGCATTTCCGCCGTCCGATGTGTACGAGTCCA 600
                                             *     *          *  *             *  

consensus_4843#2      TGATAGACGAGATGANGAGCNCCCGCGANCAAACAGTATCCAT--ATGCCGGCACGCGAA 326
consensus_4843#3      -GGCACGCGGTCCATTCCATTTCCGCGCTC---CGCGCCGTAT--GTTGTGGCAGGCCAT 228
consensus_4843#1      TGATACGCAG--CAGTACCTTTCCGCGCTTG--CAGTTTGCAACGGCGGTGGCAGTTTTC 621
consensus_4843#0      CGAATCCAGATACGCCAGGTTTCGCTCCTTCCTCGCCCTCCGTCAAGTAGGATTCTTCGT 660
                       *                    *          *                *         

consensus_4843#2      CCACGGNAANCGGAATAG------------------------------------------ 344
consensus_4843#3      CCGTGGCATGGTCCCC-------------------------------------------- 244
consensus_4843#1      TTGCGTTCGAAGACCTGGACTGCGTTAACTTTCTCCTTGCGTGCTTTCGGCATGTTTGAT 681
consensus_4843#0      ACTTGCCCATGGCCATGTCACCGTATGTGTCGTCTTCCACGTAGTTTCCATCATCGTCGG 720
                          *                                                       

consensus_4843#2      ------------------------------------------------------------
consensus_4843#3      ------------------------------------------------------------
consensus_4843#1      TCGTAGCACAACAAAACTAGAAAAGGAAAGGCCAGCCAGTTGGCCAACAGTTCTCGAGGA 741
consensus_4843#0      CATCACCTTGGTCGTGTTCCGAGAGCTTCTGTTCCTGTTCCGTTTCAGCGTCCACCGTTT 780
                                                                                  

consensus_4843#2      --------------------------------------------------------
consensus_4843#3      --------------------------------------------------------
consensus_4843#1      ATTCCGCAGCCTTTAGAGTTTTT--------------------------------- 764
consensus_4843#0      CGATCTCGGCCGTCTCATCAGTGTAGTCCGGTTCAGCCTTGGGATTTATCGATTCG 836