cluster # 4845

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Anopheles gambiae
cluster # 4845 cluster # 4845 Sequences # 4 consensus # 4

see consensus multiple alignment with clustalw

Direct access to contigs :

consensus_4845#0 length = 624 sequences # 1
consensus_4845#1 length = 582 sequences # 1

consensus_4845#2 length = 363 sequences # 1
consensus_4845#3 length = 127 sequences # 1

consensusID : consensus_4845#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 624
fasta sequence

                              [AAGGAAGATAGCGTATCATCTTTATTGTTTTCCCTTCCAATTTGTGTGGAACGTGTAGAGGACAACACGCTGCCGCATCGATTACACTAAACCCAGGTAGAAGAAGTGGAAAAGCAACCTGAGAAGCGAGCGCACGCCTCATGCACGTGTGGAGGGGGGTTGGTGTGGTTGGGGTTCAAGACTGAAACGGTGGATCTTTCCGTTCTCGTCGACCTTGTAGTACTTGAGGACAGCAAGTTTGACCTTCTTCCTCTTGTGCTTGATCTTCTTCGGGGTGGAGTAGTTCTTCTTCTTGCGCTTCTTGGCACCACCGCGCAGGCGCACACCAGATGAAGGGTCGACTCCTTCTGGATGTTGTAGTCGGACAGCGTGCGGCCATCCTCCAGCTGCTTGCCGGCGAAGATCAGACGCTGCTGATCTGGCGGGATTCCCTCCTTGTCCTGGATCTTCGCCTTCACATTCTCGATCGTATCCGAGGGCTCGACCTCAAGGGTAATGGTCTTACCCGTGAGGTTTTGACGAAGATCTGCATCTTGAACCGTCTTACTCTGACACCATAAACAAAGTAAAAGCCAGTGGGCCAACAGTTCTCGAGGAATTCCGCAGCTTTTTTTGTGTGCCCTT]

[+] EMBL CNS08F2U             [AAGGAAGATAGCGTATCATCTTTATTGTTTTCCCTTCCAATTTGTGTGGAACGTGTAGAGGACAACACGCTGCCGCATCGATTACACTAAACCCAGGTAGAAGAAGTGGAAAAGCAACCTGAGAAGCGAGCGCACGCCTCATGCACGTGTGGAGGGGGGTTGGTGTGGTTGGGGTTCAAGACTGAAACGGTGGATCTTTCCGTTCTCGTCGACCTTGTAGTACTTGAGGACAGCAAGTTTGACCTTCTTCCTCTTGTGCTTGATCTTCTTCGGGGTGGAGTAGTTCTTCTTCTTGCGCTTCTTGGCACCACCGCGCAGGCGCACACCAGATGAAGGGTCGACTCCTTCTGGATGTTGTAGTCGGACAGCGTGCGGCCATCCTCCAGCTGCTTGCCGGCGAAGATCAGACGCTGCTGATCTGGCGGGATTCCCTCCTTGTCCTGGATCTTCGCCTTCACATTCTCGATCGTATCCGAGGGCTCGACCTCAAGGGTAATGGTCTTACCCGTGAGGTTTTGACGAAGATCTGCATCTTGAACCGTCTTACTCTGACACCATAAACAAAGTAAAAGCCAGTGGGCCAACAGTTCTCGAGGAATTCCGCAGCTTTTTTTGTGTGCCCTT]




>consensus_4845#0
AAGGAAGATAGCGTATCATCTTTATTGTTTTCCCTTCCAATTTGTGTGGAACGTGTAGAG
GACAACACGCTGCCGCATCGATTACACTAAACCCAGGTAGAAGAAGTGGAAAAGCAACCT
GAGAAGCGAGCGCACGCCTCATGCACGTGTGGAGGGGGGTTGGTGTGGTTGGGGTTCAAG
ACTGAAACGGTGGATCTTTCCGTTCTCGTCGACCTTGTAGTACTTGAGGACAGCAAGTTT
GACCTTCTTCCTCTTGTGCTTGATCTTCTTCGGGGTGGAGTAGTTCTTCTTCTTGCGCTT
CTTGGCACCACCGCGCAGGCGCACACCAGATGAAGGGTCGACTCCTTCTGGATGTTGTAG
TCGGACAGCGTGCGGCCATCCTCCAGCTGCTTGCCGGCGAAGATCAGACGCTGCTGATCT
GGCGGGATTCCCTCCTTGTCCTGGATCTTCGCCTTCACATTCTCGATCGTATCCGAGGGC
TCGACCTCAAGGGTAATGGTCTTACCCGTGAGGTTTTGACGAAGATCTGCATCTTGAACC
GTCTTACTCTGACACCATAAACAAAGTAAAAGCCAGTGGGCCAACAGTTCTCGAGGAATT
CCGCAGCTTTTTTTGTGTGCCCTT

consensusID : consensus_4845#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 582
fasta sequence

                              [CCCCNGTTATCGACACAAGAGAAGCTTGCAATATCATGGCATTGTCCCATCTGAACTGGTTGATCGTGCGCGATCACAACGCGTTCCTGCTGAAGCGGAGGGACATCCGGAAGCCGTTCAGCACGGAGCCCGGAAACCTGACCAACTTGAGCTCGTTCCGTTACAGTGGGCTGGTCCACCACAAGACATCACGATTACGCCGGCTGAGAAGAAGGGCGTCAACTTCGTGTACAACCGCAAGAAGGTCTTGAACAAAGCCAGNNAAGCGCCAGTCAACGGTCACGCTCAAGGAGTGGACCTGCGTTGTACCGCTGAAGGAAGATTGGCAACATGATGAAGGCGCAACGGTANCGTGCGGATCTTGAGCGGAGCCGNCCTTCGACGTGCACAGNCGCCATCCTTCGGTCGACAGACGTCCCACCAAGACCCGAAAGGGGTAAGNGCTGGAGCTGCGCCGGCAGACGAGTAACACCGCGCGCTGCGCCGGTAACGCGCGGGTTGTCGTCCCAAGAATGGCGAGTAAGCGTCTTTTTTTGAGNAGGGGAAGGAGGTTTGATATACTTGNTCTCTGAGAGAGTAAAG]

[+] EMBL AL694264             [CCCCNGTTATCGACACAAGAGAAGCTTGCAATATCATGGCATTGTCCCATCTGAACTGGTTGATCGTGCGCGATCACAACGCGTTCCTGCTGAAGCGGAGGGACATCCGGAAGCCGTTCAGCACGGAGCCCGGAAACCTGACCAACTTGAGCTCGTTCCGTTACAGTGGGCTGGTCCACCACAAGACATCACGATTACGCCGGCTGAGAAGAAGGGCGTCAACTTCGTGTACAACCGCAAGAAGGTCTTGAACAAAGCCAGNNAAGCGCCAGTCAACGGTCACGCTCAAGGAGTGGACCTGCGTTGTACCGCTGAAGGAAGATTGGCAACATGATGAAGGCGCAACGGTANCGTGCGGATCTTGAGCGGAGCCGNCCTTCGACGTGCACAGNCGCCATCCTTCGGTCGACAGACGTCCCACCAAGACCCGAAAGGGGTAAGNGCTGGAGCTGCGCCGGCAGACGAGTAACACCGCGCGCTGCGCCGGTAACGCGCGGGTTGTCGTCCCAAGAATGGCGAGTAAGCGTCTTTTTTTGAGNAGGGGAAGGAGGTTTGATATACTTGNTCTCTGAGAGAGTAAAG]




>consensus_4845#1
CCCCNGTTATCGACACAAGAGAAGCTTGCAATATCATGGCATTGTCCCATCTGAACTGGT
TGATCGTGCGCGATCACAACGCGTTCCTGCTGAAGCGGAGGGACATCCGGAAGCCGTTCA
GCACGGAGCCCGGAAACCTGACCAACTTGAGCTCGTTCCGTTACAGTGGGCTGGTCCACC
ACAAGACATCACGATTACGCCGGCTGAGAAGAAGGGCGTCAACTTCGTGTACAACCGCAA
GAAGGTCTTGAACAAAGCCAGNNAAGCGCCAGTCAACGGTCACGCTCAAGGAGTGGACCT
GCGTTGTACCGCTGAAGGAAGATTGGCAACATGATGAAGGCGCAACGGTANCGTGCGGAT
CTTGAGCGGAGCCGNCCTTCGACGTGCACAGNCGCCATCCTTCGGTCGACAGACGTCCCA
CCAAGACCCGAAAGGGGTAAGNGCTGGAGCTGCGCCGGCAGACGAGTAACACCGCGCGCT
GCGCCGGTAACGCGCGGGTTGTCGTCCCAAGAATGGCGAGTAAGCGTCTTTTTTTGAGNA
GGGGAAGGAGGTTTGATATACTTGNTCTCTGAGAGAGTAAAG

consensusID : consensus_4845#2
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 363
fasta sequence

                              [GTCCGCCCACGCGTCCGGTTTGGAAAGCGTCCTTGTCAGCTGCGCCAAGCGGAATCCCGTACAAACGTGGGGAAGTTATTCCAGTTTTCTGTGTGAAGTGTTAACCAAGGCATTTAGTCAACATGCGTGAATGTATCTTTTTCCGTACACGTTGGACAGGCCGGTGTCCAGATCGGAAACGCCTGCTGGGAGCTGTACTGTCTGGAGCATGGGGGCATCCAACCGGACGGTCAGATGCCCTCGGACAAGACGATCGGAGGCGGTGATGACTCGTTCAACACCTTCTTGCACTTCCGAGACTGGCGCAGGCAAGCACGTGCCCCGTGCCGTGTTCGTCGATCTGGAGCCGACCGTCGTCGATGA]

[+] EMBL BM614662             [GTCCGCCCACGCGTCCGGTTTGGAAAGCGTCCTTGTCAGCTGCGCCAAGCGGAATCCCGTACAAACGTGGGGAAGTTATTCCAGTTTTCTGTGTGAAGTGTTAACCAAGGCATTTAGTCAACATGCGTGAATGTATCTTTTTCCGTACACGTTGGACAGGCCGGTGTCCAGATCGGAAACGCCTGCTGGGAGCTGTACTGTCTGGAGCATGGGGGCATCCAACCGGACGGTCAGATGCCCTCGGACAAGACGATCGGAGGCGGTGATGACTCGTTCAACACCTTCTTGCACTTCCGAGACTGGCGCAGGCAAGCACGTGCCCCGTGCCGTGTTCGTCGATCTGGAGCCGACCGTCGTCGATGA]




>consensus_4845#2
GTCCGCCCACGCGTCCGGTTTGGAAAGCGTCCTTGTCAGCTGCGCCAAGCGGAATCCCGT
ACAAACGTGGGGAAGTTATTCCAGTTTTCTGTGTGAAGTGTTAACCAAGGCATTTAGTCA
ACATGCGTGAATGTATCTTTTTCCGTACACGTTGGACAGGCCGGTGTCCAGATCGGAAAC
GCCTGCTGGGAGCTGTACTGTCTGGAGCATGGGGGCATCCAACCGGACGGTCAGATGCCC
TCGGACAAGACGATCGGAGGCGGTGATGACTCGTTCAACACCTTCTTGCACTTCCGAGAC
TGGCGCAGGCAAGCACGTGCCCCGTGCCGTGTTCGTCGATCTGGAGCCGACCGTCGTCGA
TGA

consensusID : consensus_4845#3
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 127
fasta sequence

                              [TGGATGATTTCGTTGCAACATAACGATCGTCGCTAGCTCGCGGGATCCGTGTATGTTTCCAGTACACCTATTTCAAGTGTTCGTGTCGCACGTAACTAAAATAACTCGAAACGTATCCAAAATGGTT]

[+] EMBL AL692925             [TGGATGATTTCGTTGCAACATAACGATCGTCGCTAGCTCGCGGGATCCGTGTATGTTTCCAGTACACCTATTTCAAGTGTTCGTGTCGCACGTAACTAAAATAACTCGAAACGTATCCAAAATGGTT]




>consensus_4845#3
TGGATGATTTCGTTGCAACATAACGATCGTCGCTAGCTCGCGGGATCCGTGTATGTTTCC
AGTACACCTATTTCAAGTGTTCGTGTCGCACGTAACTAAAATAACTCGAAACGTATCCAA
AATGGTT

consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_4845#1      -------------------------------CCCCNGTTATCGACACAAGAGAAGCTTGC 29
consensus_4845#3      ------------------------------------------------------------
consensus_4845#0      AAGGAAGATAGCGTATCATCTTTATTGTTTTCCCTTCCAATTTGTGTGGAACGTGTAGAG 60
consensus_4845#2      ------------------------------------------------------------
                                                                                  

consensus_4845#1      AATATCATGGCATTGTCCCATCTGAACTGGTTGATCGTGCGCGATCACAACGCGTTCCTG 89
consensus_4845#3      ------------------------------------------------------------
consensus_4845#0      GACAACACGCTGCCGCATCGATTACACTAAACCCAGGTAGAAGAAGTGGAAAAGCAACCT 120
consensus_4845#2      ------------------------GTCCGCCCACGCGTCCGGTTTGGAAAGCGTCCTTGT 36
                                                                                  

consensus_4845#1      CTGAAGCGGAGGGACATCCGGAAGCCGTTCAGCACGGAGCCCGGAAACCTGACCAACTTG 149
consensus_4845#3      ------------------------------------------------------------
consensus_4845#0      GAGAAGCGAGCGCACGCCTCATGCACGTGTGGAGGGGGGTTGGTGTGGTTGGG-GTTCAA 179
consensus_4845#2      CAGCTGCGCCAAGCGGAATCCCGTACAAACGTGGGGAAGTTATTCCAGTTTTCTGTGTGA 96
                                                                                  

consensus_4845#1      AGCTCGTTCCGTTACAGTGGGCTGGTCCACCACAAGACATCACGATTA-CGCCGGCTGAG 208
consensus_4845#3      -----------------TGGATGATTTCGTTGCA--ACATAACGATCGTCGCTAGCTCGC 41
consensus_4845#0      GACTGAAACGGTGGATCTTTCCGTTCTCGTCG-ACCTTGTAGTACTTGAGGACAGCAAGT 238
consensus_4845#2      AGTGTTAACCAAGGCATTTAGTCAACATGCGTGAATGTATCTTTTTCCGTACACGTTGGA 156
                                       *               *     *     *        *     

consensus_4845#1      AAGAAGGGCGTCAACTTCGTGTACAACCGCAAGAAG----------GTCTTGAACAAAGC 258
consensus_4845#3      GGGATCCGTGTATGTTTCCAGTACACCTATTTCAAG----------TGTTCGTGTCGCAC 91
consensus_4845#0      TTGACCTTCTTCCTCTTGTGCTTGATCTTCTTCGGGGTGGAGTAGTTCTTCTTCTTGCGC 298
consensus_4845#2      CAGGCCGGTGTCCAGATCGGAAACGCCTGCTGGGAGCT--------GTACTGTCTGGAGC 208
                        *       *     *         *        *                       *

consensus_4845#1      CAGNNAAGCGCCAGTCA-ACG--GTCACGCTCAAGGAGTGGACC-TGCGTTGTACCGCTG 314
consensus_4845#3      GTAACTAAAATAACTCG-AAA--CGTATCCAAAATGGTT--------------------- 127
consensus_4845#0      TTCTTGGCACCACCGCGCAGG--CGCACACCAGATGAAGGGTCGACTCCTTCTGGATGTT 356
consensus_4845#2      ATGGGGGCATCCAACCGGACGGTCAGATGCCCTCGGACAAGACGATCGGAGGCGGTGATG 268
                                     *  *       *  *     *                        

consensus_4845#1      AAGGAAGATTGGCAACATGATGAAGGCGCAACGGTANCGTGCGGATCTTGAGCGGAGCCG 374
consensus_4845#3      ------------------------------------------------------------
consensus_4845#0      GTAGTCGGACAGCGTGCGGCCATCCTCCAGCTGCTTGCCGGCGAAGATCAGACGCTGCTG 416
consensus_4845#2      ACTCGTTCAACACCTTCTTGCACTTCCGAGACTGGCGCAGGCAAGCACGTGCCCCGTGCC 328
                                                                                  

consensus_4845#1      NCCTTCGACGTGCACAGNCGCCATCCTTCGGTCGACAGACGTCCCACCAAGACCCGAAAG 434
consensus_4845#3      ------------------------------------------------------------
consensus_4845#0      ATCTGGCGGGATTCCCTCCTTGTCCTGGATCTTCGCCTTCACATTCTCGATCGTATCCGA 476
consensus_4845#2      GTGTTCGTCGATCTGGAGCCGACCGTCGTCGATGA------------------------- 363
                                                                                  

consensus_4845#1      GGGTAAGNGCTGGAGCTGCGCCGGCAGACGAGTAACACCGCGCGCTGCGCCGGTAACGCG 494
consensus_4845#3      ------------------------------------------------------------
consensus_4845#0      GGGCTCGACCTCAAGGGTAATGGTCTTACCCGTGAGGTTTTGACGAAGATCTGCATCTTG 536
consensus_4845#2      ------------------------------------------------------------
                                                                                  

consensus_4845#1      CGGGTTGTCGTCCCAAGAATGGCGAGTAAGCGTCTTTTTTTGAGNAGGGGAAGGAGGTTT 554
consensus_4845#3      ------------------------------------------------------------
consensus_4845#0      AACCGTCTTACTCTGACACCATAAACAAAGTAAAAGCCAGTGGGCCAACAGTTCTCGAGG 596
consensus_4845#2      ------------------------------------------------------------
                                                                                  

consensus_4845#1      GATATACTTGNTCTCTGAGAGAGTAAAG 582
consensus_4845#3      ----------------------------
consensus_4845#0      AATTCCGCAGCTTTTTTTGTGTGCCCTT 624
consensus_4845#2      ----------------------------