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These datas are free for academic use only, please contact me for any other use. Anopheles gambiae see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_4847#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 1003 fasta sequence
[CATCCAAGCGAAGAAGAAGCAGACGGTGCGAGCAGAAAATCGCGAGAAGTTCGTTCCAAGTGCAAGTCAGTGACCAGTAAATCGGGAAAAACACATTATAATCAAAGATGGCAGCCGCAAAAGCACCAGCAGTCGGTATTGATCTGGGTACGACCTACAGCTGTGTCGGAGTGTTCCAGCACGGCAAGGTCGAGATCATCGCCAACGACCAGGGCAACCGAACCACGCCATCGTATGTGGCCTTCACTGATACGGAGCGTCTGATTGGCGATGCTGCCAAGAACCAGGTGGCCATGAACCCGACCAACACCATTTTCGACGCGAAGCTGTAATCGGCCGCAAGTTCGACGATCCCGCGATCCAGGCCGACATGAAGCACTGGCCGTTCGAGGTGGAGTCGATCGAGAGCACCGCCAGAAGGAGCTCGAGTCGGTGTGCAACCCGATCATCAGCAAGCTGTACCAGGGCGCCGGTGGTGCCCCGGGAGGCATGCCCGGATTCCCGGGCGGTGCTCCGGGTGCGGGCGGAGAGCCGGCGGTGCTGCCGGTGGTGCCGGTTCCGGCTCGGGACCGACCATCGAGGAGGTCGACTAAATCACTCTACATTCCGACTGATGATGGCGCGTCGTCGTGTGTGTGTGTACCACAAGACTATGCTGTCTGCAGAGAGGGGAAAGGACGGGAATGCAATCGCTTCTCCGTGCTTCAACAAAACCATTTACCACCAGTGTCATCTTCCCTCTCTGGCTCAGCTAGCGGCGCTACCCCCCTGGACAAACACATCATCTTGCCCCCACTGTATTATCACGTCGTACGCTGCTTGAAAGCTAGCTTTTTCGCAGTGAAAACCCAAACCCGACAGCACCTGCCCTCTTTTCTTCTGCCAGTTTTCTTTTGATCTTTTTCATCTTCTCACCAAAACACCACCACCTCAGCAGCCAGTGGATTAGTGGCCATTTATCATTGTAGTTCGGTAGGGAAAGGCATTACTTCAGCGATCGTTG]
[+] EMBL CNS08IVJ [CATCCAAGCGAAGAAGAAGCAGACGGTGCGAGCAGAAAATCGCGAGAAGTTCGTTCCAAGTGCAAGTCAGTGACCAGTAAATCGGGAAAAACACATTATAATCAAAGATGGCAGCCGCAAAAGCACCAGCAGTCGGTATTGATCTGGGTACGACCTACAGCTGTGTCGGAGTGTTCCAGCACGGCAAGGTCGAGATCATCGCCAACGACCAGGGCAACCGAACCACGCCATCGTATGTGGCCTTCACTGATACGGAGCGTCTGATTGGCGATGCTGCCAAGAACCAGGTGGCCATGAACCCGACCAACACCATTTTCGACGCGAAGCTGTAATCGGCCGCAAGTTCGACGATCCCGCGATCCAGGCCGACATGAAGCACTGGCCGTTCGAGGTGGAGTCGATCGAGAGCACCGCCAGAAGGAGCTCGAGTCGGTGTGCAACCCGATCATCAGCAAGCTGTACCAGGGCGCCGGTGGTGCCCCGGGAGGCATGCCCGGATTCCCGGGCGGTGCTCCGGGTGCGGGCGGAGAGCCGGCGGTGCTGCCGGTGGTGCCGGTTCCGGCTCGGGACCGACCATCGAGGAGGTCGACTAAATCACTCTACATTCCGACTGATGATGGCGCGTCGTCGTGTGTGTGTGTACCACAAGACTATGCTGTCTGCAGAGAGGGGAAAGGACGGGAATGCAATCGCTTCTCCGTGCTTCAACAAAACCATTTACCACCAGTGTCATCTTCCCTCTCTGGCTCAGCTAGCGGCGCTACCCCCCTGGACAAACACATCATCTTGCCCCCACTGTATTATCACGTCGTACGCTGCTTGAAAGCTAGCTTTTTCGCAGTGAAAACCCAAACCCGACAGCACCTGCCCTCTTTTCTTCTGCCAGTTTTCTTTTGATCTTTTTCATCTTCTCACCAAAACACCACCACCTCAGCAGCCAGTGGATTAGTGGCCATTTATCATTGTAGTTCGGTAGGGAAAGGCATTACTTCAGCGATCGTTG]
consensusID : consensus_4847#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 2 consensus length = 810 fasta sequence
[CGCTCGGTATCGAGACGGCGGTGCTGCCGGTGGTGCCGGTTCCGGCTCGGGACCGGCCATCGAGGAGGTCGAGTAAATCAATCTACATTCCGACTGATGTTGGCGCGTCGTCGTGTGTGTGTACCACAAGACTATGCTGTCGGCAGAGAGGGGAAAGGACGGGAAGGCAATCGCTTCTCCGTGCTTCAAGAAAACCATTTACCACCAGTGTCATCTTCCCTCTCTGGCTCAGCTAGCGGCGCTACCCCCCTGGACAACACATCATCTTGCCCCCACTGTATTTTCACGTCGTATGCTGCTTGAAAGCTAGCTTTTTCGCAGTGAAAAACCAAACCCGACAGCACCTGCCCTCTTTTCTTCTGCCAGTCTTCTTTTGATGTTTTTCATCTTCTCACCAAAACACCACCACCTCAGCAGCCAGTCGATTAGTGGCCATTTATCATTGTAGTTCGGTAGGGAAAGGCATTGCTTCAGCGATCGTTGTGTGAGAGTGTGTGTGTGTGTGCGCACGTGCGCTCGCGTGATATATGCTGACAAGTATTTTAGCTTTAATGTTGAATGTTAGTTTATTTTGCGCTTCTCGGGTCTTCCTGCGATGGGAGCGGAGGAGGAGAGGTCGCGCAACCCAGTATCCACGATTGCACACGCGAACACTTGCTCTTCTCTTGCCCAGCCAATAATGATATGCGCGCGTAAGTGCTGATTGAAATTTTAAACAAACGAAACAAGAAATAGACCAAACAGATAAATAAAAGAAAGAGCTCTGTTAACACTCCAATGAACAACATCTAGATTGGAGGGAAATTAGAA]
[-] EMBL CNS08UVZ [CGCTCGGTATCGAGACGGCGGTGCTGCCGGTGGTGCCGGTTCCGGCTCGGGACCGGCCATCGAGGAGGTCGAGTAAATCAATCTACATTCCGACTGATGTTGGCGCGTCGTCGTGTGTGTGTACCACAAGACTATGCTGTCGGCAGAGAGGGGAAAGGACGGGAAGGCAATCGCTTCTCCGTGCTTCAAGAAAACCATTTACCACCAGTGTCATCTTCCCTCTCTGGCTCAGCTAGCGGCGCTACCCCCCTGGACAACACATCATCTTGCCCCCACTGTATTTTCACGTCGTATGCTGCTTGAAAGCTAGCTTTTTCGCAGTGAAAAACCAAACCCGACAGCACCTGCCCTCTTTTCTTCTGCCAGTCTTCTTTTGATGTTTTTCATCTTCTCACCAAAACACCACCACCTCAGCAGCCAGTCGATTAGTGGCCATTTATCATTGTAGTTCGGTAGGGAAAGGCATTGCTTCAGCGATCGTTGTGTGAGAGTGTGTGTGTGTGTGCGCACGTGCGCTCGCGTGATATATGCTGACAAGTATTTTAGCTTTAATGTTGAATGTTAGTTTATTTTGCGCTTCTCGGGTCTTCCTGCGATGGGAGCGGAGGAGGAGAGGTCGCGCAACCCAGTATCCACGATTGCACACGCGAACACTTGCTCTTCTCTTGCCCAGCCAATAATGATATGCGCGCGTAAGTGCTGATTGAAATTTTAAACAAACGAAACAAGAAATAGACCAAACAGATAAATAAAAGAAAGAGCTCTGTTAACACTCCAATGAACAACATCTAGATTGGAGGGAAATTAGAA]
[-] EMBL CNS09N3P [ aAGAGGGGAAAGGACGGGAATGAAATCGCTTCTCCGTGCTTCAAAAAAACCATTTACCACCAGTGTCATCTTCCCTTTCTGGCTCAGCTAGCGGCGCTACCCCCCTGGACAAAACATCTTCTTGCCCCCACTGTATTTTCACGTCGTATGCTGCTTGAAAGCTAGCTTTTTCGCAGTGAAAAACCAAACCCCACAGCACCTGCCCTCTTTTCTTCTGCCAGTCTTCTTTTGATCTTTTTCATCTTTTCACCAAAACACCACCACCTCAGCAGCCAGTCGATTAGTGGCCATTTATCATTGTAGTTCGGTAGGGAAAGGCATTGCTTCAGCGATCGTTGTGTGAGAGTGTGTGTGTGTGTGCGCACGTGGGCTCGCGTGATATATGCTGACAAGTATTTTA CTTTAATGTTGAATGTTA ]
consensusID : consensus_4847#2 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 643 fasta sequence
[CCGCCCACGCGTCCGCCCACGCGTCCGCCCACGCGTCCGCCCGTCTGGTGTTTGGACCGGCGGGACTCGGGCCATCTGTTCTGGCGCCGGGAGTCCTCCAAGGTGAAGTTCCGCTACGATGTGGAGGTGCTCGAGTTCACCAAAGACCCGTACGAGGATCAGCTGCTCATCACGGACAGTGAGCTGAGCAGGGCAAAACAGCAACAGCAGCAGGCCGGTGCCGTCTCCAACATGATCGTCGTTTGTGTGACGTGTGTCGCGGCCATTGCCGTTACGGTAGTGCTGCCCTGGTTCCTGATCGGATCGGCTTGAGCATTGGTCTTGAAAATTCCCACCCCCCCACACACACACCCACTATGTCCTAGAGCGCAGTGGGGGACAGTGTGTGTGTATGTGAGTGAAGAGTGTTGTGAAAAGCATGTGAATCGCTTGGAAGGAGGTTCCCTCCCTACCCAAGCACACCACAATTGTGATAGCTGTCCCTAGCAGAAAGAGTGAGAAAGTGTGTGAAACAAAACGGAGTCTACGAAAGTGTTAGGGACATTTTTTCTCCAAAACAATTTTTACAAACGCTAGCCCGTAAGATAGATAGAGCTGTCCAACACGTACTAACCGAGCAAAATCCCGCCTCAACATGGTGTAA]
[+] EMBL BM600975 [CCGCCCACGCGTCCGCCCACGCGTCCGCCCACGCGTCCGCCCGTCTGGTGTTTGGACCGGCGGGACTCGGGCCATCTGTTCTGGCGCCGGGAGTCCTCCAAGGTGAAGTTCCGCTACGATGTGGAGGTGCTCGAGTTCACCAAAGACCCGTACGAGGATCAGCTGCTCATCACGGACAGTGAGCTGAGCAGGGCAAAACAGCAACAGCAGCAGGCCGGTGCCGTCTCCAACATGATCGTCGTTTGTGTGACGTGTGTCGCGGCCATTGCCGTTACGGTAGTGCTGCCCTGGTTCCTGATCGGATCGGCTTGAGCATTGGTCTTGAAAATTCCCACCCCCCCACACACACACCCACTATGTCCTAGAGCGCAGTGGGGGACAGTGTGTGTGTATGTGAGTGAAGAGTGTTGTGAAAAGCATGTGAATCGCTTGGAAGGAGGTTCCCTCCCTACCCAAGCACACCACAATTGTGATAGCTGTCCCTAGCAGAAAGAGTGAGAAAGTGTGTGAAACAAAACGGAGTCTACGAAAGTGTTAGGGACATTTTTTCTCCAAAACAATTTTTACAAACGCTAGCCCGTAAGATAGATAGAGCTGTCCAACACGTACTAACCGAGCAAAATCCCGCCTCAACATGGTGTAA]
consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment
consensus_4847#0 CATCCAAGCGAAGAAGAAGCAGACGGTGCGAGCAGAAAATCGCGAGAAGTTCGTTCCAAG 60
consensus_4847#1 ------------------------------------------------------------
consensus_4847#2 ------------------------------------------------------------
consensus_4847#0 TGCAAGTCAGTGACCAGTAAATCGGGAAAAACACATTATAATCAAAGATGGCAGCCGCAA 120
consensus_4847#1 ------------------------------------------------------------
consensus_4847#2 ------------------------------------------------------------
consensus_4847#0 AAGCACCAGCAGTCGGTATTGATCTGGGTACGACCTACAGCTGTGTCGGAGTGTTCCAGC 180
consensus_4847#1 ------------------------------------------------------------
consensus_4847#2 ------------------------------------------------------------
consensus_4847#0 ACGGCAAGGTCGAGATCATCGCCAACGACCAGGGCAACCGAACCACGCCATCGTATGTGG 240
consensus_4847#1 ------------------------------------------------------------
consensus_4847#2 ------------------------------------------------------------
consensus_4847#0 CCTTCACTGATACGGAGCGTCTGATTGGCGATGCTGCCAAGAACCAGGTGGCCATGAACC 300
consensus_4847#1 ------------------------------------------------------------
consensus_4847#2 ------------------------------------------------------------
consensus_4847#0 CGACCAACACCATTTTCGACGCGAAGCTGTAATCGGCCGCAAGTTCGACGATCCCGCGAT 360
consensus_4847#1 ------------------------------------------------------------
consensus_4847#2 ------------------------------------------------------------
consensus_4847#0 CCAGGCCGACATGAAGCACTGGCCGTTCGAGGTGGAGTCGATCGAGAGCACCGCCAGAAG 420
consensus_4847#1 ------------------------------------------------------------
consensus_4847#2 ------------------------------------------------------------
consensus_4847#0 GAGCTCGAGTCGGTGTGCAACCCGATCATCAGCAAGCTGTACCAGGGCGCCGGTGGTGCC 480
consensus_4847#1 ------------------------------------------------------------
consensus_4847#2 -----------------------------------------CCGCCCACGCGTCCGCCCA 19
consensus_4847#0 CCGGGAGGCATGCCCGGATTCCCGGGCGGTGCTCCGGGTGCG-GGCGGAGAGCCGGCGGT 539
consensus_4847#1 --------------------------------------CGCTCGGTATCGAGACGGCGGT 22
consensus_4847#2 CGCGTCCGCCCACGCGTCCGCCCGTCTGGTGTTTGGACCGGCGGGACTCGGGCCATCTGT 79
* ** * * * * **
consensus_4847#0 GCTGCCGGTGGTGCCGGTTCCGGCTCGGGACCGACCA-----TCGAGGAGGTCGACTAAA 594
consensus_4847#1 GCTGCCGGTGGTGCCGGTTCCGGCTCGGGACCGGCCA-----TCGAGGAGGTCGAGTAAA 77
consensus_4847#2 TCTGGCGCCGGGAGTCCTCCAAGGTGAAGTTCCGCTACGATGTGGAGGTGCTCGAGTTCA 139
*** ** ** * * * * * * * * * **** * **** * *
consensus_4847#0 TCACTCTACATTCCGACTGATGATGGCGCGTCGTCGTGTGTGTGTGTACCACAAGACTAT 654
consensus_4847#1 TCAATCTACATTCCGACTGATGTTGGCGCGTCGTCGTGTGTGTGT--ACCACAAGACTAT 135
consensus_4847#2 CCAAAGACCCGTACGAGGATCAGCTGCTCATCACGGACAGTGAGCTGAGCAGGGCAAAAC 199
** * * *** ** * ** * *** * * ** * *
consensus_4847#0 GCTGTCTGCAG-AGAGGGGAAAGGACGGGAATGCAATCGCTTCTCCGTGCTTCAACAAAA 713
consensus_4847#1 GCTGTCGGCAG-AGAGGGGAAAGGACGGGAAGGCAATCGCTTCTCCGTGCTTCAAGAAAA 194
consensus_4847#2 AGCAACAGCAGCAGGCCGGTGCCGTCTCCAACATGATCG-TCGTTTGTGTGACGTGTGTC 258
* **** ** ** * * ** **** * * *** *
consensus_4847#0 CCATTTACCACCAGTGTCATCTTCCCTCTCTGGCTC--AGCTAGCGGCGCTACCCCCCTG 771
consensus_4847#1 CCATTTACCACCAGTGTCATCTTCCCTCTCTGGCTC--AGCTAGCGGCGCTACCCCCCTG 252
consensus_4847#2 GCGGCCATTGCCGTTACGGTAGTGCTGCCCTGGTTCCTGATCGGATCGGCTTGAGCATTG 318
* * ** * * * * * **** ** * *** * **
consensus_4847#0 GACAAACACATCATCTTGCCCCCAC-TGTATTATCAC---GTCGTACGCTGCT-TGAAAG 826
consensus_4847#1 GACAA-CACATCATCTTGCCCCCAC-TGTATTTTCAC---GTCGTATGCTGCT-TGAAAG 306
consensus_4847#2 GTCTTGAAAATTCCCACCCCCCCACACACACACCCACTATGTCCTAGAGCGCAGTGGGGG 378
* * * ** * ******* * *** *** ** ** ** *
consensus_4847#0 CTAGCTTTTTCGCA-GTGAAAACCCAAACCCGACAGCACCTGCCCTCTTTTCTTCTGCCA 885
consensus_4847#1 CTAGCTTTTTCGCA-GTGAAAAACCAAACCCGACAGCACCTGCCCTCTTTTCTTCTGCCA 365
consensus_4847#2 ACAGTGTGTGTGTATGTGAGTGAAGAGTGTTGTGAAAAGCATGTGAATCGCTTGGAAGGA 438
** * * * * **** * * * * * * * *
consensus_4847#0 GTTTTCTTTTGATCTTTTTCATCTTCTCACCAAAACACCACCACCTCAGCAGCCAGTGGA 945
consensus_4847#1 GTCTTCTTTTGATGTTTTTCATCTTCTCACCAAAACACCACCACCTCAGCAGCCAGTCGA 425
consensus_4847#2 GGTTCCCTCCCTACCCAAGCACACCACAATTGTGATAGC-TGTCCCTAGCAGAAAGAGTG 497
* * * * ** * * * * ** ***** **
consensus_4847#0 TTAGTGGCCATTTATCAT--TGTAGTTCGGTAGGG----AAAGGCATTACTTC-----AG 994
consensus_4847#1 TTAGTGGCCATTTATCAT--TGTAGTTCGGTAGGG----AAAGGCATTGCTTC-----AG 474
consensus_4847#2 AGAAAGTGTGTGAAACAAAACGGAGTCTACGAAAGTGTTAGGGACATTTTTTCTCCAAAA 557
* * * * ** * *** * * * * **** *** *
consensus_4847#0 CGATCGTTG--------------------------------------------------- 1003
consensus_4847#1 CGATCGTTGTGTGAGAGTGTGTGTGTGTGTGCGCACGTGCGCTCGCGTGATATATGCTGA 534
consensus_4847#2 CAATTTTTACAAACGCTAGCCCGTAAGATAGATAGAGCTGTCCAACACGTACTAACCGAG 617
* ** **
consensus_4847#0 ------------------------------------------------------------
consensus_4847#1 CAAGTATTTTAGCTTTAATGTTGAATGTTAGTTTATTTTGCGCTTCTCGGGTCTTCCTGC 594
consensus_4847#2 CAAAATCCCGCCTCAACATGGTGTAA---------------------------------- 643
consensus_4847#0 ------------------------------------------------------------
consensus_4847#1 GATGGGAGCGGAGGAGGAGAGGTCGCGCAACCCAGTATCCACGATTGCACACGCGAACAC 654
consensus_4847#2 ------------------------------------------------------------
consensus_4847#0 ------------------------------------------------------------
consensus_4847#1 TTGCTCTTCTCTTGCCCAGCCAATAATGATATGCGCGCGTAAGTGCTGATTGAAATTTTA 714
consensus_4847#2 ------------------------------------------------------------
consensus_4847#0 ------------------------------------------------------------
consensus_4847#1 AACAAACGAAACAAGAAATAGACCAAACAGATAAATAAAAGAAAGAGCTCTGTTAACACT 774
consensus_4847#2 ------------------------------------------------------------
consensus_4847#0 ------------------------------------
consensus_4847#1 CCAATGAACAACATCTAGATTGGAGGGAAATTAGAA 810
consensus_4847#2 ------------------------------------
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| Copyright Wed Dec 3 12:11:56 CET 2003 Hubert Wassner (hubert.wassner@noos.fr) | ||||