These datas are free for academic use only, please contact me for any other use. Anopheles gambiae see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_4848#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 2 consensus length = 1070 fasta sequence [ATTTGTGCCTCCGAACGGTTAAGGCCCTCGACCGCGTGCTCCGCCGGGTTTTTCTTACAGTTGCTAGCGTCACCAGACCAGATCCATCGAAAATGACCAAGAAGGCTGATCCCTATGGCTTCGCCAAGGATTTCCTGGCCGGTGGTATCTCTGCCGCTGTCTCGAAAACGGCCGTAGCACCGATCGAACGCGTCAAGCTGCTGCTCCAGGTCCAGGCTGCCTCCAAGCAGATCGCCGTCGACAAGCAGTACAAGGGTATCGTCGATTGCTTCGTTCGCATCCCGAA-GAGCAGGGAATCGGTGCCTTCTGGCGCGGTAACTTGGCCAACGTGATCCGTTACTTCCCGACCCAGGCCCTGAACTTCGCGTTCAAGGATGTGTACAAACAGGTGTTCCTCGGCGGCGTCGACAAGAACACCCAGTTCTGGCGCTACTTCCTGGGTAACCTCGGATCCGGCGGTGCCGCCGGTGCCACGTCGCTCTGCTTCGTGAGTTCAACGGTCTGCTCGACTGTCTGAAGAAGACGGTCAAGTCGGACGGTATCATCGGTCTGTACCGTGGATTCAACGTGTCCGTTCAGGGTATCATCATCTATCGTGCGGCCTACTTCGGTTGCTTCGATACTGCCAAGGGAATGCTGCCGGACCCGAAGAACACCTCCATCTTCGTCTCGTGGGCCATCGCACAGGTGGTGACGACGGCTTCCGGTATTATTTCGTATCCTTTCGATACCGTCAGACGACGCATGATGATGCAGTCTGGCCGTGCCAAGTCGGAGGTGATGTACAAGAACACGCTCGACTGCTGGGTCAAGATCGGCAAGCAGGAAGGTTCCGGCGCGTTCTTCAAGGGCGCTTTCTCGAACGTCCTGCGTGGTACTGGTGGCGCTCTGGTGCTCGTATTCTACGACGAATTAAAGGCCCTGCTGGGTTAAGACGGGGAACAGCACGCACCTTAGTGTAATTAGTTATGTCCAGCCAGCCAGAACAGCAGCAGCAGCAGCAGTTACATCAACAACAACAACAACCATTATAACATCCAAATCAAAACACACTTACCGGTAGCGATCGG] [+] EMBL CNS08HR3 [ATTTGTGCCTCCGAACGGTTAAGGCCCTCGACCGCGTGCTCCGCCGGGTTTTTCTTACAGTTGCTAGCGTCACCAGACCAGATCCATCGAAAATGACCAAGAAGGCTGATCCCTATGGCTTCGCCAAGGATTTCCTGGCCGGTGGTATCTCTGCCGCTGTCTCGAAAACGGCCGTAGCACCGATCGAACGCGTCAAGCTGCTGCTCCAGGTCCAGGCTGCCTCCAAGCAGATCGCCGTCGACAAGCAGTACAAGGGTATCGTCGATTGCTTCGTTCGCATCCCGAA GAGCAGGGAATCGGTGCCTTCTGGCGCGGTAACTTGGCCAACGTGATCCGTTACTTCCCGACCCAGGCCCTGAACTTCGCGTTCAAGGATGTGTACAAACAGGTGTTCCTCGGCGGCGTCGACAAGAACACCCAGTTCTGGCGCTACTTCCTGGGTAACCTCGGATCCGGCGGTGCCGCCGGTGCCACGTCGCTCTGCTTCGTGAGTTCAACGGTCTGCTCGACTGTCTGAAGAAGACGGTCAAGTCGGACGGTATCATCGGTCTGTACCGTGGATTCAACGTGTCCGTTCAGGGTATCATCATCTATCGTGCGGCCTACTTCGGTTGCTTCGATACTGCCAAGGGAATGCTGCCGGACCCGAAGAACACCTCCATCTTCGTCTCGTGGGCCATCGCACAGGTGGTGACGACGGCTTCCGGTATTATTTCGTATCCTTTCGATACCGTCAGACGACGCATGATGATGCAGTCTGGCCGTGCCAAGTCGGAGGTGATGTACAAGAACACGCTCGACTGCTGGGTCAAGATCGGCAAGCAGGAAGGTTCCGGCGCGTTCTTCAAGGGCGCTTTCTCGAACGTCCTGCGTGGTACTGGTGGCGCTCTGGTGCTCGTATTCTACGACGAATTAAAGGCCCTGCTGGGTTAAGACGGGGAACAGCACGCACCTTAGTGTAATTAGTTATGTCCAGCCAGC ] [-] EMBL CNS08HR4 [ AGGTCCAGGCTGCCTCCAAGCAGATCGCCGTCGACAAGCAGAACAAGGGTATCGTCAATTGCTTCGTTCGCATCCCGAAGGAGCAGGGAATCGGTGCCTTCTGGCGCGGTAACTTGGCCAACGTGATCCGTTACTTCCCGACCCAGGCCCTGAACTTCGCGTTCAAGGATGTGTACAAACAGGTGTTCCTCGGCGGCGTCAACAAGAACACCCAGTTCTGGCGCTACTTCCTGGGTAACCTCGGATTCCGCGGTGCCGCCGGTGCCACGTCGCTCTGCTTCGTGAGTTCAACGGTCTGCTCAACTGTCTGAAGAAGACGGTCAAGTCGGACGGTATCATCGGTCTGTACCGTGGATTCAACGTGTCCGTTCAGGGTATCATCATCTATCGTGCGGCCTACTTCGGTTGCTTCGAAACTGCCAAGGGAATGCTGCCGGACCCGAAGAACACCTCCATCTTCGTCTCGTGGGCCATCGCACAGGTGGTGACGACGGCTTCCGGTATTATTTCGTATCCTTTCGATACCGTCAGACGACGCATGATGATGCAGTCTGGCCGTGCCAAGTCGGAGGTGATGTACAAGAACACGCTCAACTGCTGGGTCAAGATCGGCAAGCAGGAAGGTTCCGGCGCGTTCTTCAAGGGCGCTTTCTCGAACGTCCTGCGTGGTACTGGTGGCGCTCTGGTGCTCGTATTCTACGACGAAGTTAAGGCCCTGCTGGGTTAAGACGGGGAACAGCACGCACCTTAGTGTAATTAGTTATGTCCAGCCAGCCAGAACAGCAGCAGCAGCAGCAGTTACATCAACAACAACAACAACCATTATAACATCCAAATCAAAACACACTTACCGGTAGCGATCGG] consensusID : consensus_4848#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 915 fasta sequence [AATCGGCACGAGGTGAGCGATACACGATCCACCAAAACCAGCGTATATCGGCACACATCGCGCAGCTACCGGGAGCAAGTCGCTCCGATACAACCGCACCGATCGACTTTTCCGCGTCACCTCCATCAAGCAACCGCTCCAAGATGAACAAGCTACTCACCGGTGGACTACTGTTCCTGCTCGTGGCCGGCTCGCTCGTGTCCGGCTCGATGTTTGGCCCGTTCGGACCGTTCGGACCGGCCGCTCAGACTGCCGGGCGCAGTCGGCGGCTATCCGGGCGCGGTCGGAGGGTATCCGGGCGCGGTCGGCGGTTTGCCCATGTACCCGGGCCGTCCCGGCCTTGGACAGCTGCCCGTGTACCCGCCGGTCTACCCGGNCGCACCGATGATGNCCCCGACGCCGGCCATGCCGTACGCTTACGGTCGCGCCATGCCGGCGATGATGCCAGTTGCGGCCGCCCNACCGGCAGACAACCGTGCGCACCGTTGCCTCGAACACGCGACAGTGCCTGGGACGGATNTGGCATGTAGGACGACCATGCCCCGAAGGAATTCTGCAGCAGGCGCGCCCAGGAAGTGCAGGGCCGGCAGCGAGCAGGGCTTCTCACCNCCCNTGCAAAAACACCNCGCAATTTGCCTTAACCGAAACCTNAAACCCGGTGCTTCCCCCATACCCTTGGGCCAANANTTAACCAAAACGGCNCCCTTGCAAATTACGCCGCCTTCCANAGCATTAGCACCCACCCCGATTCCCTANGGAACCNCNCNCACACANACANACGCCGCTCCCTCTCTCTCCCACCCAAACACGCATACNCCGACAACTNCNCCTCTACCCCACCCCCACCCATNNCCCNCTACCGTTNTGCANCACGCCCCCCCNACCATCTGTCTTGTACTANCNACTGNCTTCNCC] [+] EMBL BX469224 [AATCGGCACGAGGTGAGCGATACACGATCCACCAAAACCAGCGTATATCGGCACACATCGCGCAGCTACCGGGAGCAAGTCGCTCCGATACAACCGCACCGATCGACTTTTCCGCGTCACCTCCATCAAGCAACCGCTCCAAGATGAACAAGCTACTCACCGGTGGACTACTGTTCCTGCTCGTGGCCGGCTCGCTCGTGTCCGGCTCGATGTTTGGCCCGTTCGGACCGTTCGGACCGGCCGCTCAGACTGCCGGGCGCAGTCGGCGGCTATCCGGGCGCGGTCGGAGGGTATCCGGGCGCGGTCGGCGGTTTGCCCATGTACCCGGGCCGTCCCGGCCTTGGACAGCTGCCCGTGTACCCGCCGGTCTACCCGGNCGCACCGATGATGNCCCCGACGCCGGCCATGCCGTACGCTTACGGTCGCGCCATGCCGGCGATGATGCCAGTTGCGGCCGCCCNACCGGCAGACAACCGTGCGCACCGTTGCCTCGAACACGCGACAGTGCCTGGGACGGATNTGGCATGTAGGACGACCATGCCCCGAAGGAATTCTGCAGCAGGCGCGCCCAGGAAGTGCAGGGCCGGCAGCGAGCAGGGCTTCTCACCNCCCNTGCAAAAACACCNCGCAATTTGCCTTAACCGAAACCTNAAACCCGGTGCTTCCCCCATACCCTTGGGCCAANANTTAACCAAAACGGCNCCCTTGCAAATTACGCCGCCTTCCANAGCATTAGCACCCACCCCGATTCCCTANGGAACCNCNCNCACACANACANACGCCGCTCCCTCTCTCTCCCACCCAAACACGCATACNCCGACAACTNCNCCTCTACCCCACCCCCACCCATNNCCCNCTACCGTTNTGCANCACGCCCCCCCNACCATCTGTCTTGTACTANCNACTGNCTTCNCC] consensusID : consensus_4848#2 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 695 fasta sequence [CCGCGGACGCGTGGGGGTCAAAGCAAGACCTACCAACGGGTGTGACTGTGTGAGTTTTTTGTTTTGTTTTTTTTTTGTGCATCGTATAGTGTTAGTGACCATCAACACAACAATCGCAAACCATGGCTGCCGCCTGCAAGATCGATCTGACGTTCGAGAATGGCCACAAAATGCCGGCCCTTGGTTTCGGAACCTGGCGGGCTCCGGACGAGGAGGTGGAGAAAGCACTGAACCAGGCGCTCGAGGCCGGCTATCGGCACATCGACTGTGCGCCGGTCTATCTGAACGAGCCAACGATCGGGCGCGTACTGCGCCAGTGGATCGACAGTGGCCGGGTGACGCGCGAGGAGCTCTTCATCGTCACCAAGTTGCCGCCGCATGGTACGCGGGCCGCAACGGTTGAGAAATTTCTTAAACGATCGTTGACCGATCTTCAGCTCGATTACGTCGATCTGTACCTGGTGCACGTCCCGTTTACCGTGCCCGAAGTGGACGGTCCCTTCCTGACCGACGACAATGGGGAAATCGTACTCGAAACCACGACGGACCATGTCAGCCTCTGGAAGGGCATGGAAGCGATCGCCGATGCCGGTCTGGCACGCAGCATAGGGCTATCGAATTTCAACCAGCGGCAAATACAGAGAGTGCTCGATAATTGCCGAATTAAGCCGGCCAACTTGCAGATTGAAAATCAC] [+] EMBL BM604905 [CCGCGGACGCGTGGGGGTCAAAGCAAGACCTACCAACGGGTGTGACTGTGTGAGTTTTTTGTTTTGTTTTTTTTTTGTGCATCGTATAGTGTTAGTGACCATCAACACAACAATCGCAAACCATGGCTGCCGCCTGCAAGATCGATCTGACGTTCGAGAATGGCCACAAAATGCCGGCCCTTGGTTTCGGAACCTGGCGGGCTCCGGACGAGGAGGTGGAGAAAGCACTGAACCAGGCGCTCGAGGCCGGCTATCGGCACATCGACTGTGCGCCGGTCTATCTGAACGAGCCAACGATCGGGCGCGTACTGCGCCAGTGGATCGACAGTGGCCGGGTGACGCGCGAGGAGCTCTTCATCGTCACCAAGTTGCCGCCGCATGGTACGCGGGCCGCAACGGTTGAGAAATTTCTTAAACGATCGTTGACCGATCTTCAGCTCGATTACGTCGATCTGTACCTGGTGCACGTCCCGTTTACCGTGCCCGAAGTGGACGGTCCCTTCCTGACCGACGACAATGGGGAAATCGTACTCGAAACCACGACGGACCATGTCAGCCTCTGGAAGGGCATGGAAGCGATCGCCGATGCCGGTCTGGCACGCAGCATAGGGCTATCGAATTTCAACCAGCGGCAAATACAGAGAGTGCTCGATAATTGCCGAATTAAGCCGGCCAACTTGCAGATTGAAAATCAC] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_4848#0 ATTTGTGCCTCCGAACGGTTAAGGCCCTCGACCGCGTGCTCCGCCGGGTTTTTCTTACAG 60 consensus_4848#1 ------------------------------------------------------------ consensus_4848#2 ------------------------------------------------------------ consensus_4848#0 TTGCTAGCGTCACCAGACCAGATCCATCGAAAATGACCAAGAAGGCTGATCCCTATG-GC 119 consensus_4848#1 -------------------------------AATCGGCACGAGG--TGAGCGATACACGA 27 consensus_4848#2 ------------------------------------------------------------ consensus_4848#0 TTCGCCAAGGATTTCCTGGCCGGTGGTATCTCTGCCGCTGTC-TCGAAAACGGCCGTAGC 178 consensus_4848#1 TCCACCAAAACCAGCGTA--TATCGGCACACATCGCGCAGCTACCGGGAGCAA--GTCGC 83 consensus_4848#2 ------------------------------------------------------------ consensus_4848#0 ACCGAT-CGAACGCGTCAAGCTGCTGCTCCAGGTCCAGGCTGCCTCCAAGCAGATCGCCG 237 consensus_4848#1 TCCGATACAACCGCACCGATCGACTTTTCCGCGTC---ACCTCCATCAAGCA-ACCGCTC 139 consensus_4848#2 ------------------------------------------------------CCGCGG 6 *** consensus_4848#0 TCGACAAGCAGTACAAGGGTATCGTCGATTGCTTCGTTCGCATCCCGAAGAGCAGGGAAT 297 consensus_4848#1 ----CAAGATGAACAAGCTACTCACCGGTGGACTACTGTTCCTGCTCGTGGCCGG---CT 192 consensus_4848#2 ACG-CGTGGGGGTCAAAGCAAG-ACCTACCAACGGGTGTGACTGTGTGAGTTTTTTGTTT 64 * * * *** * * * * * consensus_4848#0 CGGTGCCTTCTGGCGCGGTAACTTGGCCAACGTGATCCGTTACTTCCCGACCC-AGGCCC 356 consensus_4848#1 CGCTCGTGTCCGGCTCGATG-TTTGGCCCGTTCGGACCGTT-CGGACCGGCC----GCTC 246 consensus_4848#2 TGTTTTTTTTTTGTGCATCG-TATAGTGTTAGTGACCATCAACACAACAATCGCAAACCA 123 * * * * * * * * * * * * * consensus_4848#0 TGAACTTCGCGTTCAAGGATGTGTACAAACAGGTGTTCCTCGGCGGCGTCGACAAGAACA 416 consensus_4848#1 AGACTGCCGGGCGCAGTCG-GCGGCTATCCGGGCGCGGTCGGAGGGTATC--CGGGCGCG 303 consensus_4848#2 TGGCTGCCGCCTGCAA------GATCGATCTGACGTTCGAGAATGGC-----CACAAAAT 172 * ** ** * * * * ** * consensus_4848#0 CCCAGTT-CTGGCGCTACTTCCTGGGTAACCTCGGATCCGGCGGTGCCGCCGGTGC-CAC 474 consensus_4848#1 GTCGGCGGTTTGCCCATGTACCCGGGCCGTCCCGGCCTTGGACA-GCTGCCCGTGTACCC 362 consensus_4848#2 GCCGGCCCTTGGTTTCGGAACCTGGCGGGCTCCGGACGAGGAGGTGGAGAAAGCAC---- 228 * * * * ** ** *** ** * * * consensus_4848#0 GTCGCTCTGCTTCGTGAGTTCAACGGTCTGCTCGACTGTCTGAAGAAGACGGTCAAGTCG 534 consensus_4848#1 GCCGGTCTACCCGGNCGCACCGATGATGNCCCCGACG--CCGGCCATGCCGTACGCTTAC 420 consensus_4848#2 -TGAACCAGGCGCTCGAGGCCGGCTATCGGCACATCGA-CTG--TGCGCCGGTCTA-TCT 283 * * * * * * * * * ** * * consensus_4848#0 GACGGTATCAT-CGGTCTGTACCGTGGATTCAACGTGTCCGTTCAGGGTATCATCATCTA 593 consensus_4848#1 GGTCGCGCCATGCCGGCGATGATGCCAGTTGCGGCCGCCCNACCGGCAGACAACCGTG-- 478 consensus_4848#2 GAACGAGCCAA-CGATCGG-----------GCGCGTACTGCGCCAGTGGATCGACAGTGG 331 * * ** * * * * * * consensus_4848#0 TCGTGCGGCCTACTTCGGTTGCTTCGATACTGCCAAGGGAATG-CTGCCGGACCCGAAGA 652 consensus_4848#1 -CGCACCGT-TGCCTCGAACACG-CGACAGTGCCTGGGACGGATNTGGCATGTAGGACGA 535 consensus_4848#2 CCGGGTGACGCGCGAGGAGCTCTTCATCGTCACCAAG-------TTGCCGC-CGCATGGT 383 ** * * * * ** * ** * * consensus_4848#0 ACAC-CTCCATCTTCGTCTCGTGGGCCAT-CGCACAGGTGGTGACGA--CGGCTTCCGGT 708 consensus_4848#1 CCATGCCCCGAAGGAATTCTGCAGCAGGCGCGCCCAGGAAGTGCAGGGCCGGCAGCGAGC 595 consensus_4848#2 ACGCGGGCCGCAACGGT----TGAGAAAT-TTCTTAAACGATCGTTGACCGATCTTCAGC 438 * ** * * * * ** * consensus_4848#0 ATTATTTCGTATCCTTTCGATACCGTCAGACGACGCATGATGATGCAGTCTGGCCGTGCC 768 consensus_4848#1 AGGGCTTCTCACCNCCCN--TGCAAAAACACCNCGCAATTTGCCTTAACCGAAACCTN-- 651 consensus_4848#2 TCGATTACGTCGATCTGT---------ACCTGGTGCACGTCCCGTTTACCGTGCCC---- 485 * * * *** * * consensus_4848#0 AAGTCGGAGGTGATGTACAAGAACACGCTCGACTGCTGGGTCAAGATCGGCAAGCAGGAA 828 consensus_4848#1 AAACCCGGTGCTTCCCCCATACCCTTGGGCCAANANTTAACCAAAA-CGGCNCCCTTGCA 710 consensus_4848#2 GAAGTGGACGGTCCCTTCCTGACCGACGACAATGGGGAAATCGTACTCGAAACCACGACG 545 * * * * * * * * ** consensus_4848#0 GGTTCCGGCGCGTTCTTCAAGG---GCGCTTTCTCGAACGTCCTGCGTGGTACTGGTGGC 885 consensus_4848#1 AATTACGCCGCCTTCCANAGCATTAGCACCCACCCCGATTCCCTAN--GGAACCNCNCNC 768 consensus_4848#2 GACCATGTCAGCCTCTGGAAGG---GCATGGAAGCGATCGCC------GATGCCGGTCTG 596 * * ** * ** * * * * consensus_4848#0 GCTCTGGTGCTCGTATTCTACGACGAATTAAAGGCCCTGCTGGGTTAAGACGGGGAACAG 945 consensus_4848#1 ACACANACANACGCCGCTCCCTCTCTCTCCCA--CCCAAACACGCATACNCCGACAACTN 826 consensus_4848#2 GCACGCA-GCATAGGGCTATCGA--ATTTCAA---CCAGC--GGCAAATACAGAGAGT-- 646 * * * * * ** * * * * * consensus_4848#0 CACGC--ACCTTAGTGTAATTAGTTATGTCCAGCCAGCCAGAACAGCAGCAGCAGCAGCA 1003 consensus_4848#1 CNCCTCTACCCCACCCCCACCCATNNCCCNCTACCGTTNTGCANCACGCCCCCCCNACCA 886 consensus_4848#2 -------GCTCGATAATTGCCGAATTAAGCCGGCCAACTTGCAGATTGAAAATCAC---- 695 * * * ** * * consensus_4848#0 GTTACATCAACAACAACAACAACCATTATAACATCCAAATCAAAACACACTTACCGGTAG 1063 consensus_4848#1 TCTGTCTTG-TACTANCNACTGNCTTCNCC------------------------------ 915 consensus_4848#2 ------------------------------------------------------------ consensus_4848#0 CGATCGG 1070 consensus_4848#1 ------- consensus_4848#2 ------- |
Copyright Wed Dec 3 12:11:56 CET 2003 Hubert Wassner (hubert.wassner@noos.fr) | ||||