These datas are free for academic use only, please contact me for any other use. Anopheles gambiae see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_4852#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 2 consensus length = 963 fasta sequence [GGGCAATGATCGAACAGCAACAGCAAATGACGCACCAGCGCCTTTGCACGTCAATAAAGATGCGAGGAGAAAATCCTTACATCTCGATGACACGCTGACCGGTCTTGTTGGTCTTGTCGAGGAAGTCGGCGAACTCCTGGTACGGGGTCTTGTTCAGCGGCAGAACCTTCCACAAGTCCGGCGTCAGGAAGGCGTACGTCTTGGCAATGGCGGCGTACGTGGCCTTCGCGAAGTTACCGAGCGTGGTCGTGGAACCACGGGTGGTGGTATAGCAATCGTCAATACCAGCCATCTGCAGCAGCTTCTTCGGAACCGGGGCAGAAACGATGCCGGTACCACGCGGACCGGAATCAGACGCACCAAAACGGAACCGCACTTGCCGCTGACCTTGCACGGTACGGTGTGAGGGCGACCTAGGTATAGCGGGATGAGACGCCGGGCTGCAGAAGCAGACTCCAACGGATCTCAGAGGGTTGTTAGGCCCGCTAGCTTCCGAACACCTAATGGGTTTGAGAAGCGCTATCAGCTCGGATTGGCTACGACCTTAGAGGCGTTCAGGCATAATCCAGCGGATGTAGCGTCATACCAAAGTCCGGTCGGACTAGTATTGAGCCAGTGGTCCGTACCTGTGGTTCCTCTCGTACTGCACAGGAATTCCGTTAAGATAGCGACTATAAGCACACACCAGTGGGGTAAAACTAACCTGTCTCACGACGGTCTAAACCCAGCTCACGTTCCCTTGAAAGGGTGAACAATCCTACGCTTGGTGAATTTTGCTTCACAATGATAGGAAGAGCCGACATCGAAGGATCAAAAAGCCACGTCGCTATGAACGCTTGGCGGCCACAAGCCAGTTATCCCTGTGGTAACTTTTCTGACACCTCTTGCTAAAAACTCGTTATAACCAAAAGGATCGTAAGGCCAAGCTTTCGCTGTACTTCACACCCAGACCGATGTGACCGT] [+] EMBL CNS09KV1 [GGGCAATGATCGAACAGCAACAGCAAATGACGCACCAGCGCCTTTGCACGTCAATAAAGATGCGAGGAGAAAATCCTTACATCTCGATGACACGCTGACCGGTCTTGTTGGTCTTGTCGAGGAAGTCGGCGAACTCCTGGTACGGGGTCTTGTTCAGCGGCAGAACCTTCCACAAGTCCGGCGTCAGGAAGGCGTACGTCTTGGCAATGGCGGCGTACGTGGCCTTCGCGAAGTTACCGAGCGTGGTCGTGGAACCACGGGTGGTGGTATAGCAATCGTCAATACCAGCCATCTGCAGCAGCTTCTTCGGAACCGGGGCAGAAACGATGCCGGTACCACGCGGACCGGAATCAGACGCACCAAAACGGAACCGCACTTGCCGCTGACCTTGCACGGTACGGTGTGAGGGCGACCTAGGTATAGCGGGATGAGACGCCGGGCTGCAGAAGCAGACTCCAACGGATCTCAGAGGGTTGTTAGGCCCGCTAGCTTCCGAACACCTAATGGGTTTGAGAAGCGCTATCAGCTCGGATTGGCTACGACCTTAGAGGCGTTCAGGCATAATCCAGCGGATGTAGCGTCATACCAAAGTCCGGTCGGACTAGTATTGAGCCAGTGGTCCGTACCTGTGGTTCCTCTCGTACTGCACAGGAATTCCGTTAAGATAGCGACTATAAGCACACACCAGTGGGGTAAAACTAACCTGTCTCACGACGGTCTAAACCCAGCTCACGTTCCCTTGAAAGGGTGAACAATCCTACGCTTGGTGAATTTTGCTTCACAATGATAGGAAGAGCCGACATCGAAGGATCAAAAAGCCACGTCGCTATGAACGCTTGGCGGCCACAAGCCAGTTATCCCTGTGGTAA ] [-] EMBL CNS09KV0 [ GCACCAGAACGGAACCGCACTTGCCGCTGACCTTGCACGGTACGGTGTGAGGGCGACCTAGGTATAGCGGGATGAGACGCCGGGCTGCAGAAGCAGACTCCAACGGATCTCAGAGGGTTGTTAGGCCCGCTAGCTTCCGAACACCTAATGGGTTTGAGAAGCGCTATCAGCTCGGATTGGCTACGACCTTAGAGGCGTTCAGGCATAATCCAGCGGATGTAGCGTCATACCAAAGTCCGGTCGGACTAGTATTGAGCCAGTGGTCCGTACCTGTGGTTCCTCTCGTACTGCACAGGAATTCCGTTAAGATAGCGACTATAAGCACACACCAGTAGGGTAAAACTAACCTGTCTCACGACGGTCTAAACCCAGCTCACGTTCCCTTGAAAGGGTGAACAATCCTACGCTTGGTGAATTTTGCTTCACAATGATAGGAAGAGCCGACATCGAAGGATCAAAAAGCCACGTCGCTATGAACGCTTGGCGGCCACAAGCCAGTTATCCCTGTGGTAACTTTTCTGACACCTCTTGCTAAAAACTCGTTATAACCAAAAGGATCGTAAGGCCAAGCTTTCGCTGTACTTCACACCCAGACCGATGTGACCGT] consensusID : consensus_4852#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 651 fasta sequence [CCGCCCACGCGTCCGCCCACGCGTCCGGTTCGACGAATTGTCAACCGCGGATTGGAGCAGCAGCAGCAGCAGCGGCAGAGAAGCAAGCGCGCACCTTTATCCGCAACATCTGTTGTGTTGCGCATTTCGCGTGTGTGTGTGCAAGTAGGTGGCAGTTTTTGCAAGTTCGTGGCTGGTCTGGTATCCGTTCCCAGGATACAGCACACACGGCGCTGATCCTCTCGAGCTGAGCAGAGCAGTAGGCTGTGAAGGAAATTCGCTTTTCCTTCCGGTGTCCCAAACGCTTGCCTGGAAGGTTGATAGAAAACGACGTGTACCACCATCACCGAGGGCGTAAAATATACTAAAACCGAAGAAAGATGGCCCCTAACGCAACGGTGGAGGCAACCGGTGTGCTGAACGAGCTGGACGCCGAAACGATCGACGGCGGACTGGCGAAGGATGTGACGCCGCTGAAGCGTGCCGAGAAGCGCAAGATCAAGCTGGTCTGGAGAAATGTGATTGCCTTCGGTTACCTTCATCTGGCCGCCGTGTACGGCGCCTTTCTAATGCTGACATCCGCCCGGCTCTACACCATCGCGTTCGCATTCGTGTTGTACGTCGTGTCCGGACTGGGACATTACGGCTGGCGCGCATCGTCTGTGGGCCCAT] [+] EMBL BM607286 [CCGCCCACGCGTCCGCCCACGCGTCCGGTTCGACGAATTGTCAACCGCGGATTGGAGCAGCAGCAGCAGCAGCGGCAGAGAAGCAAGCGCGCACCTTTATCCGCAACATCTGTTGTGTTGCGCATTTCGCGTGTGTGTGTGCAAGTAGGTGGCAGTTTTTGCAAGTTCGTGGCTGGTCTGGTATCCGTTCCCAGGATACAGCACACACGGCGCTGATCCTCTCGAGCTGAGCAGAGCAGTAGGCTGTGAAGGAAATTCGCTTTTCCTTCCGGTGTCCCAAACGCTTGCCTGGAAGGTTGATAGAAAACGACGTGTACCACCATCACCGAGGGCGTAAAATATACTAAAACCGAAGAAAGATGGCCCCTAACGCAACGGTGGAGGCAACCGGTGTGCTGAACGAGCTGGACGCCGAAACGATCGACGGCGGACTGGCGAAGGATGTGACGCCGCTGAAGCGTGCCGAGAAGCGCAAGATCAAGCTGGTCTGGAGAAATGTGATTGCCTTCGGTTACCTTCATCTGGCCGCCGTGTACGGCGCCTTTCTAATGCTGACATCCGCCCGGCTCTACACCATCGCGTTCGCATTCGTGTTGTACGTCGTGTCCGGACTGGGACATTACGGCTGGCGCGCATCGTCTGTGGGCCCAT] consensusID : consensus_4852#2 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 221 fasta sequence [TGAACTACTACAACTAACATTAGAAATGGATNAGGAAATATGNATACCCGTGAAATATGTGAAAATGTTACAACAAGAGTACTTACAACCTGGTCTACTCCATCCCGTCTTATTCCTTATACCGTGCTGTTCTCTTAATGAAGCTCACGACACGTGCTCCCTCTTTTGCCTGTCGCTGCGTGCCATAGGAAACTCGCGTGCGAGGGCAAAAACTCAGTGTN] [+] EMBL BX619342 [TGAACTACTACAACTAACATTAGAAATGGATNAGGAAATATGNATACCCGTGAAATATGTGAAAATGTTACAACAAGAGTACTTACAACCTGGTCTACTCCATCCCGTCTTATTCCTTATACCGTGCTGTTCTCTTAATGAAGCTCACGACACGTGCTCCCTCTTTTGCCTGTCGCTGCGTGCCATAGGAAACTCGCGTGCGAGGGCAAAAACTCAGTGTN] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_4852#1 ------------------------------------------------------------ consensus_4852#2 ------------------------------------------------------------ consensus_4852#0 GGGCAATGATCGAACAGCAACAGCAAATGACGCACCAGCGCCTTTGCACGTCAATAAAGA 60 consensus_4852#1 ------------------------------------------------------------ consensus_4852#2 ------------------------------------------------------------ consensus_4852#0 TGCGAGGAGAAAATCCTTACATCTCGATGACACGCTGACCGGTCTTGTTGGTCTTGTCGA 120 consensus_4852#1 ----------------------------CCGCCCACGCGTCCGCCCACGCGTCCGGTTCG 32 consensus_4852#2 ------------------------------------------------------------ consensus_4852#0 GGAAGTCGGCGAACTCCTGGTACGGGGTCTTGTTCAGCGGCAGAACCTTCCACAAGTCCG 180 consensus_4852#1 ACGAATTGTCAACCGCGGATTGGAGCAGCAGCAGCAGCAGCGGCAGAGAAGCAAGCGCGC 92 consensus_4852#2 ---------------TGAACTACTACAAC--TAACATTAGAAATGGATNAGGAAATATGN 43 consensus_4852#0 GCGT-CAGGAAGGCGTACGTCTTGGCAATGGCGGCGTACGTGGCCTTCGCGAAGTTACCG 239 ** * * * * consensus_4852#1 ACCTTTATCCGCAACATCTGTTGTGTTGCGCATTTCGCGTGTGTGTGTGCAAGTAG---G 149 consensus_4852#2 A----TACCCGTGAAATATGTGAAAATGT---TACAACAAGAGTACTTACAACCTG---G 93 consensus_4852#0 AGCG-TGGTCGTGGAACCACGGGTGGTGG---TATAGCAATCGTCAATACCAGCCATCTG 295 * * ** * ** * * ** * * * * consensus_4852#1 TGGCAGTTTTTGCAAGTTCGTGGCTGGTCTGGTATCCGTTCC--------CAGGATACAG 201 consensus_4852#2 TC-TACTCCATCCCGTCTTATTCCTTATACCGTG-CTGTTCT--------CTTAATGAAG 143 consensus_4852#0 CAGCAGCTTCTTCGGAACCGGGGCAGAAACGATGCCGGTACCACGCGGACCGGAATCAGA 355 * * * * * * ** * * ** consensus_4852#1 CACAC-ACGGCGCTGATCCTCTCGA-GCTGAGCA-GAGCAGTAGGCTGTGAAGGAAATTC 258 consensus_4852#2 CTCAC-GACACGTGCTCCCTCTTTT-GCCTGTC----GCTGCGTGCCAT--AGGAAACTC 195 consensus_4852#0 CGCACCAAAACGGAACCGCACTTGCCGCTGACCTTGCACGGTACGGTGTGAGGGCGACCT 415 * *** ** * ** ** * * * * * ** * consensus_4852#1 GCTTTTCCTTC---------CGGTGTCCCAAACGCTTGCCTGGAAGGTTGATAGAAAACG 309 consensus_4852#2 GCGTGCGAGGG---------CAAAAACTCAG-TGTN------------------------ 221 consensus_4852#0 AGGTATAGCGGGATGAGACGCCGGGCTGCAGAAGCAGACTCCAACGGATCTCAGAGGGTT 475 * * ** * consensus_4852#1 ACGTGTACCACCATCA-CCGAGGGCGTAAAATATACTAAAACCGAAGAAAGATGGCCCCT 368 consensus_4852#2 ------------------------------------------------------------ consensus_4852#0 GTTAGGCCCGCTAGCTTCCGAACACCTAATGGGTTTGAGAAGCGCTATCAGCTCGGATTG 535 consensus_4852#1 AACGCAACGGTGGAGGCAACCGGTGT--GCTGAACGAGCTGGACGCCGAAACGATCGACG 426 consensus_4852#2 ------------------------------------------------------------ consensus_4852#0 GCTACGACCTTAGAGGCGTTCAGGCATAATCCAGCGGATGTAGCGTCATACCAAAGTCCG 595 consensus_4852#1 G-CGGACTGGCGAAGGATGTGACGCC---GCTGAAGCGTGCCGAGAAGCGCAAGATCAAG 482 consensus_4852#2 ------------------------------------------------------------ consensus_4852#0 GTCGGACTAGTATTGAGCCAGTGGTCCGTACCTGTGGTTCCTCTCGTACTGCACAGGAAT 655 consensus_4852#1 CTGGTCTGGAGAAATGTGATTGCCTTCGGTTACCTTCATCTGGCCGCCGTGTACGGCGCC 542 consensus_4852#2 ------------------------------------------------------------ consensus_4852#0 TCCGTTAAGATAGCGACTATAAGCACACACCAGTGGGGTAAAACTAACCTGTCTCACGAC 715 consensus_4852#1 TTTCTAATGCTGACATCCGCCCGGCTCTACACCATCGCGTTCGCATTCGTGTTGTACGTC 602 consensus_4852#2 ------------------------------------------------------------ consensus_4852#0 GGTCTAAACCCAGCTCACGTTCCCTTGAAAGGGTGAACAATCCTACGCTTGGTGAATTTT 775 consensus_4852#1 GTGTCCGGACTGGGACATTACGGCTGGCGCGCATCGTCTGTGGGCCCAT----------- 651 consensus_4852#2 ------------------------------------------------------------ consensus_4852#0 GCTTCACAATGATAGGA--AGAGCCGACATCGAAGGATCAAAAAGCCACGTCGCTATGAA 833 consensus_4852#1 ------------------------------------------------------------ consensus_4852#2 ------------------------------------------------------------ consensus_4852#0 CGCTTGGCGGCCACAAGCCAGTTATCCCTGTGGTAACTTTTCTGACACCTCTTGCTAAAA 893 consensus_4852#1 ------------------------------------------------------------ consensus_4852#2 ------------------------------------------------------------ consensus_4852#0 ACTCGTTATAACCAAAAGGATCGTAAGGCCAAGCTTTCGCTGTACTTCACACCCAGACCG 953 consensus_4852#1 ---------- consensus_4852#2 ---------- consensus_4852#0 ATGTGACCGT 963 |
Copyright Wed Dec 3 12:11:56 CET 2003 Hubert Wassner (hubert.wassner@noos.fr) | ||||