These datas are free for academic use only, please contact me for any other use. Anopheles gambiae see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_4861#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 3 consensus length = 1001 fasta sequence [GGATTCG-AGGGTGGTGCTGACAAGGTGTTGGCTGCGTGTAGCTATTTTTTGCGCCCAAATTCCCCTCTCAACTTTATCTGTGCAAGCAGCTGAACAAAGCGATGAAGGGCATGGGCACGGACGAGGACACGCTGATCGAGGTGCTGGCCCCGCAGACGAACGAGGAGGTGAAGAAGATCGTCGACTGCTACGAGGAGATGTACGGCCGGCCGCTGGCCGAGCATCTGTGCAGCGAGACGGACGGTAGCTTCCGCCGACTGCTGACCATGATCATTGTCGGTGCCCGTGACGCGCAGGGCACGGTCGATGCGGACCTGGCCGTCGAGCAGGCGAACAG-CTGTACGATGCGGGCGAGGGCAAGCTCGGCACGGACGAGGAAGTGTTCTACAAGATACTGGCGCACGCCTCCTTCGACCAGCTCGAGATTGTGTTCGAGGAGTACAAGAAGCTGTCCGGCCAAACGATCGAGCAGGCGATGAAGAGTGAGCTGAGCGGGGAGCTTTATGATGCGCTCAGCGCGATCGTGGAGTGCGTCCAGATGGCACCGCACTTCTTTGCCAAGCGGCTGCACAAAGCGATGGATGGGGCGGGCACGGATGATGAGAAGCTGATCCGGATCATTGTGTCGCGGTCGGAGATCGATCTGCAGAACGTGAAGGATGAGTTCGAGCAGATGTACAACAAGACGCTGCTGAGCGCCGTAAGGAACGAATGTTCCGGCGACTACAAGCGTGCTCTCTGCGCACTGATCGGCGGTGCCTAAACACCTGTAACACGAAAGGCAAATGTTTTTGAATCTCATATATACATCACAAAACATAATTTTGAAACGAGCCAACGATATTTATGTACCGCACTACTACGCGTACGTTTGCGAGCAAAACGGAAAGCTGGGAAGGGCTTTCGCTATTTACTATGGTAGAAGTTCAGGAACTTCCTTGAGCATGGTGGCCTTTTGGGTGAGCGATTAGCCTGGCGCATTCTTCAATGTTGCAGCCTTA] [+] EMBL CNS09JQ8 [GGATTCG AGGGTGGTGCTGACAAGGTGTTGGCTGCGTGTAGCTATTTTTTGCGCCCAAATTCCCCTCTCAACTTTATCTGTGCAAGCAGCTGAACAAAGCGATGAAGGGCATGGGCACGGACGAGGACACGCTGATCGAGGTGCTGGCCCCGCAGACGAACGAGGAGGTGAAGAAGATCGTCGACTGCTACGAGGAGATGTACGGCCGGCCGCTGGCCGAGCATCTGTGCAGCGAGACGGACGGTAGCTTCCGCCGACTGCTGACCATGATCATTGTCGGTGCCCGTGACGCGCAGGGCACGGTCGATGCGGACCTGGCCGTCGAGCAGGCGAACAG CTGTACGATGCGGGCGAGGGCAAGCTCGGCACGGACGAGGAAGTGTTCTACAAGATACTGGCGCACGCCTCCTTCGACCAGCTCGAGATTGTGTTCGAGGAGTACAAGAAGCTGTCCGGCCAAACGATCGAGCAGGCGATGAAGAGTGAGCTGAGCGGGGAGCTTTATGATGCGCTCAGCGCGATCGTGGAGTGCGTCCAGATGGCACCGCACTTCTTTGCCAAGCGGCTGCACAAAGCGATGGATGGGGCGGGCACGGATGATGAGAAGCTGATCCGGATCATTGTGTCGCGGTCGGAGATCGATCTGCAGAACGTGAAGGATGAGTTCGAGCAGATGTACAACAAGACGCTGCTGAGCGCCGTAAGGAACGAATGTTCCGGCGACTACAAGCGTGCTCTCTGCGCACTGATCGGCGGTGCCTAAACACCTGTAACACGAAAGGCAAATGTTTTTGAATCTCATATATACATCACAAAACATAATTTTGAAACGAGCCAACGATATTTATGTACCGCACTACTACGCGTACGTTTGCGAGCAAAACGGAAAGCTGGGAAGGGCTTTCGCTATTTACTATGGTAGAAGTTCAGGAACTTCCTTGAGCATGGTGGCCTTTTGGGTGAGCGATTAGCCTGGCGCATTCTTCAATGTTGCAGCCTTA] [+] EMBL CNS099SD [ GATTCGTATTGTGGTGCTGACAAGGTGTTGGCTGCGTGTAGCTATTTTTTGCGCCCAAATTCCCCTCTCAACTTTATCTGTGCAAGCAGCTGAACAAAGCGATGAAGGGCATGGGCACGGACGAGGACACGCTGATCGAGGTGCTGGCCCCGCAGACGAACGAGGAGGTGAAGAAGATCGTCGACTGCTACGAGGAGATGTACGGCCGGCCGCTGGCCGAGCATCTGTGCAGCGAGACGGACGGTAGCTTCCGCCGACTGCTGACCATGATCATTGTCGGTGCCCGTGACGCGCAGGGCACGGTCGATGCGGACCTGGCCGTCGAGCAGGCGAACAG CTGTACGATGCGGGCGAGGGCAAGCTCGGCACGGACGAGGAAGTGTTCTACAAGATACTGGCGCACG CTCCTTCGACCAGCTCGAGATTGTGTTCGAGGAGTACAAGAAGCTGTCCGGCCAAACGATCGAGCAGGCGATGAAGAGTGAGCTGAGCGGGGAGCTTTATGAT ] [+] EMBL CNS09PWQ [ aAAGGTGTTGG TGCGTG AG TATTTTTTGCG CCAAATTCCCCTCTCAACTTTATCTGTGCAAGCAGCTGAACAAAGCGATGAAGGGCATGGGCACGGACGAGGACACGCTGATCGAGGTGCTGGCCCCGCAGACGAACGAGGAGGTGAAGAAGATCGTCGACTGCTACGAGGAGATGTACGGCCGGCCGCTGG CGAGCATCTGTGCAGCGAGACGGACGGTAGCTTCCGCCGACTGCTGACCATGATCATTGTCGGTGCCCGTGACGCGCAGGGCACGGTCGATGCGGACCTGGCCGTCGAGCAGGCGAACAGCCTGTACGATGCGGGCGAGGGCAAGCTCGGCACGGACGAGGAAGTGTTCTACAAGATACTGGCGCACGCCTCCTTCGACCAGCTCGAGATTGTGTTCGAGGAGTACAAGAAGCTGTCCGGCCAAACGATCGAGCAGGCGATGAAGAGTGAGCTGAGCGGGGAGCTTTATGATGCGCTCAG GCGATCGTGGAGTGCGTCCAGATGGCACCGCACTTCTTTGCCAAGCGGCTGCACAAAGCGATGGATGGGGCGGGCACGGATGATGAGAAGCTGATCCGGATCATTGTGTCGCGGTCGGAGATCGATCTGCAGAACGTGAAGGATGAGTTCGAGCAGATGTACAACAAGACGCTGCTGAGCGCCGTAAGGAACGAATGTTCCGGCGACTACAAGCGTGCTCTCTGCGCACTGATCGGCGGTGCCTAAACACCTGTAACACGAAAGGCAAATGTTTTTGAATCTCATATATACATCACAAAACATAATTTTGAAACG ] consensusID : consensus_4861#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 550 fasta sequence [CCGTTGACTTGCGGGGCTTACTCGATGGGGCTGTCGTTCCTTGCTGTCCGACAAACCGAACGATTCATAGGAGAAATCGGTCAATGCGGTGAAAACCAAGCCTGCTGCTCAGAAGCCGGCTCAGAAGAATGTGCTGCGCGGCAAAAATCCCATCAAGAAGAAGCGTGAGCACCTTCGGTATGGCATCGATTGCACCAACATCGCCGAGGACAACATCATGGATGTGGCCGACTTTGAAAAGTATCTGAAGGAGCGCTTTAAGGTAAACGGAAAGGCCGGCAACCTCGGCAGCAACGTGAGCTTCGAACGCCAGAAGATGAAGGTGTACGTCAACTCGGATGTGCATTTCTCCAAGCGCTACCTGAAGTACTTGACCAGGAAGTACTTGAAGAAGAACAGTCTCCGCGACTGGATCCGTGTTGTGTCCAACGATAAGGATTTGTACGAGCTGCGATACTTCCGAATCAGCTCGAACGACGACGATGAGGAAGAGAACGAGTAAACCAGAACTGCTGGAAGTGGTGAATGGTGCACTGTACTGGAGATTTGC] [+] EMBL BM598503 [CCGTTGACTTGCGGGGCTTACTCGATGGGGCTGTCGTTCCTTGCTGTCCGACAAACCGAACGATTCATAGGAGAAATCGGTCAATGCGGTGAAAACCAAGCCTGCTGCTCAGAAGCCGGCTCAGAAGAATGTGCTGCGCGGCAAAAATCCCATCAAGAAGAAGCGTGAGCACCTTCGGTATGGCATCGATTGCACCAACATCGCCGAGGACAACATCATGGATGTGGCCGACTTTGAAAAGTATCTGAAGGAGCGCTTTAAGGTAAACGGAAAGGCCGGCAACCTCGGCAGCAACGTGAGCTTCGAACGCCAGAAGATGAAGGTGTACGTCAACTCGGATGTGCATTTCTCCAAGCGCTACCTGAAGTACTTGACCAGGAAGTACTTGAAGAAGAACAGTCTCCGCGACTGGATCCGTGTTGTGTCCAACGATAAGGATTTGTACGAGCTGCGATACTTCCGAATCAGCTCGAACGACGACGATGAGGAAGAGAACGAGTAAACCAGAACTGCTGGAAGTGGTGAATGGTGCACTGTACTGGAGATTTGC] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_4861#0 GGATTCGAGGGTGGTGCTGACAAGGTGTTGGCTGCGTGTAGCTATTTTTTGCGCCCAAAT 60 consensus_4861#1 ------------------------------------------------------------ consensus_4861#0 TCCCCTCTCAACTTTATCTGTGCAAGCAGCTGAACAAAGCGATGAAGGGCATGGGCACGG 120 consensus_4861#1 ------------------------------------------------------------ consensus_4861#0 ACGAGGACACGCTGATCGAGGTGCTGGCCCCGCAGACGAACGAGGAGGTGAAGAAGATCG 180 consensus_4861#1 ------------------------------------------------------------ consensus_4861#0 TCGACTGCTACGAGGAGATGTACGGCCGGCCGCTGGCCGAGCATCTGTGCAGCGAGACGG 240 consensus_4861#1 ------------------------------------------------------------ consensus_4861#0 ACGGTAGCTTCCGCCGACTGCTGACCATGATCATTGTCGGTGCCCGTGACGCGCAGGGCA 300 consensus_4861#1 ------------------------------------------------------------ consensus_4861#0 CGGTCGATGCGGACCTGGCCGTCGAGCAGGCGAACAGCTGTACGATGCGGGCGAGGGCAA 360 consensus_4861#1 --------------------------------------------------CCGTTGACTT 10 ** * * consensus_4861#0 GCTCGGCACGGACGAGGAAGTGTTCTACAAGATACTGGCGCACGCCTCCTTCGACCAGCT 420 consensus_4861#1 GCGGGGCTTACTCGATGGGGC-TGTCGTTCCTTGCTGTCCGACAAACCGAACGATTCATA 69 ** *** *** * * * * *** * ** * *** consensus_4861#0 CGAGATTGTGTTCGAGGAGTACAAGAAGCTGTCCGGCCAAACGATCGAGCAGGCGATGAA 480 consensus_4861#1 GGAGAAATCGGTCAATGCG-GTGAAAACCAAGCCTGCTGCTCAG--AAGCCGGCTCAGAA 126 **** * ** * * * * ** * ** ** * *** *** *** consensus_4861#0 GAGTGAGCTGAGCGGGGAGCTTTATGATGCGCTCAGCGCGATCGTGGAGTGCGTCCAGAT 540 consensus_4861#1 GAATGTGCTGCGCGGCAAAAAT-----CCCATCAAGAAGAAGCGTGAGCACCTTCGGTAT 181 ** ** **** **** * * * ** * **** * ** ** consensus_4861#0 GGCACCGCACTTCTTTGCCAAGCGGCTGCACAAAGCGATGGATGGGGCGGGCACGGATGA 600 consensus_4861#1 GGCATCG-ATTGCACCAACATCGCCGAGGACAACATCATGGATGTGGCCGACTT---TGA 237 **** ** * * * ** * **** ******* *** * * *** consensus_4861#0 TGAGAAGCTGATCCGGATCATTGTGTCGCGGTCGGAGATCGATCTGCAGAACGTGAAGGA 660 consensus_4861#1 AAAGTATCTGA--AGGAGCGCTTTAAGGTAAACGGAAA--GGCCGGCA--ACCTCGGCAG 291 ** * **** *** * * * * **** * * * *** ** * consensus_4861#0 TGAGTTCGAGCAGATGTACAACAAGACGCTGCTGAGCGCCGTAAGGAACGAATGTTCCGG 720 consensus_4861#1 CAACGTGAGCTTCGAACGCCAGAAGATGAAGGTGTACGTCAACTCGGATGTGCATTTC-- 349 * * * * **** * * ** ** * * * * ** * consensus_4861#0 CGACTACAAGCGTGCTCTCTGCGCACTGATCGGCGGTGCCTAAACACCTGTAACACGAAA 780 consensus_4861#1 ----TCCAAGCGCTACCT----GAAGTACTTGACCAGG---AAGTACTTG-AAGAAGAAC 397 * ****** ** * * * * * * * ** ** ** ** * *** consensus_4861#0 GGCAAATGTTTTTGAATCTCATATATACATCACAAAACATAATTTTGAAACGAGCCAACG 840 consensus_4861#1 AGTCTCCGCGACTGGATC-CGTGT-TGTGTCCAACGATAAGGATTTGTA-CGAGCTG-CG 453 * * ** *** * * * * ** * * * **** * ***** ** consensus_4861#0 ATATTTATGTACCGCACTACTACGCGTACGTTTGCGAGCAAAACGGAAAGCTGGGAAGGG 900 consensus_4861#1 ATACTTCCGAATCA-GCTCGAACGACGACGATGAGGAAGAGAACGAGTAAACCAGAACTG 512 *** ** * * * ** *** *** * ** * **** * *** * consensus_4861#0 CTTTCGCTATTTACTATGGTAGAAGTTCAGGAACTTCCTTGAGCATGGTGGCCTTTTGGG 960 consensus_4861#1 CTGGAAGTGGTGAATGGTGCACTGTACTGGAGATTTGC---------------------- 550 ** * * * * * * * * ** * consensus_4861#0 TGAGCGATTAGCCTGGCGCATTCTTCAATGTTGCAGCCTTA 1001 consensus_4861#1 ----------------------------------------- |
Copyright Wed Dec 3 12:11:56 CET 2003 Hubert Wassner (hubert.wassner@noos.fr) | ||||