cluster # 4866

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Anopheles gambiae
cluster # 4866 cluster # 4866 Sequences # 4 consensus # 2

see consensus multiple alignment with clustalw

Direct access to contigs :

consensus_4866#0 length = 972 sequences # 3

consensus_4866#1 length = 218 sequences # 1

consensusID : consensus_4866#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 3
consensus length = 972
fasta sequence

                              [CCGAACGAGGCAACACGTACGTGTTCGGCCCGTCGTGAGCAAAAATGGTGAACCACCGTATTCCTTCGGTCTTCTCCAAGACCTACGTTACTCCCCGTCGTCCGTTCGAAAAGCCACGTCTCGATGCGGAATTGAAGATTATTGGCCAGTACGGCCTGCGTAACAAGCGTGAGGTATGGCGTGTGAAGTACACGCTTGCCAAGATCCGCAAGGCTGCTCGTGAGTTGCTCACGCTGGAAGAGAAGGATGAGAAGCGCCTGTTCCAAGGTAACGCCCTGCTGCGTCGTCTGGTTCGCATCGGTGTGCTGGATGAGTCCCGCATGAAGCTCGATTACGTGCTCGGCTTGAGAATTGAGGATTTCCTTGAGCGCCGTCTGCAGACCCAGGTGTTCAAGCTGGGATTAGCCAAGTCGTACCATCACGCTCGCGTTCTGATCCGCCAGCGTCACATTCGTTCTCTAGAGAGATTTTGCGCTGGCCCCGTGCCGCCGCAAATGATCGTGAGTGCCACTTAGAATCAGAAGGGTCGCAAGATTTTTCGGTTTCTAACGCCTCACATACATACGTACACACGAAAAACAAGTTCAGTGACACGGCTTTACTTGTACGATGAAGCAGTTTCCTGGTTGGTCACCAACGCGC---ATTGGCGATCATTGGATCTATTCACTGCAAGAATAAGCCATTAAGAACTTGATGATTCGTGCTGAAACGTACTCGCCGATCCATGGAAGCAAGAATCAGATGTATTTCTTCCACATGCGCGATGCAGCGATGCATTGAGGATCACTGGAAGGTTTTACTGTTGTATCGATTCGGAACGAGTGTCCGCAAGCAGGTCGTGAACGTTCCTTCGTTCATCGTCCGTCTGGATTCGCAGAAGCACATCGACTTCTCGCTGAAGTCGCCCTTCGGTGGTGGCCGTCCGGGTCGCGTCAAGAGGAAGAACCTGAAGAAGGGCCAGGGTGGCGGCGG]

[+] EMBL BM596454             [CCGAACGAGGCAACACGTACGTGTTCGGCCCGTCGTGAGCAAAAATGGTGAACCACCGTATTCCTTCGGTCTTCTCCAAGACCTACGTTACTCCCCGTCGTCCGTTCGAAAAGCCACGTCTCGATGCGGAATTGAAGATTATTGGCCAGTACGGCCTGCGTAACAAGCGTGAGGTATGGCGTGTGAAGTACACGCTTGCCAAGATCCGCAAGGCTGCTCGTGAGTTGCTCACGCTGGAAGAGAAGGATGAGAAGCGCCTGTTCCAAGGTAACGCCCTGCTGCGTCGTCTGGTTCGCATCGGTGTGCTGGATGAGTCCCGCATGAAGCTCGATTACGTGCTCGGCTTGAGAATTGAGGATTTCCTTGAGCGCCGTCTGCAGACCCAGGTGTTCAAGCTGGGATTAGCCAAGTCGTACCATCACGCTCGCGTTCTGATCCGCCAGCGTCACATTCGTTCTCTAGAGAGATTTTGCGCTGGCCCCGTGCCGCCGCAAATGATCGTGAGTGCCACTTAGAATCAGAAGGGTCGCAAGATTTTTCGGTTTCTAACGCCTCACATACATACGTACACACGAAAAACAAGTTCAGTGACACGGCTTTACTTGTACGATGAAGCAGTTTCCTGGTTGGTCACCAACGCGCATTATTGGCGATCATTGGATCTATT                                                                                                                                                                                                                                                                                                                    ]
[+] EMBL BX602196             [  cAACGAGGCAACACGTACGTGTTCGGCCCGTCGTGAGCAAAAATGGTGAACCACCGTATTCCTTCGGTCTTCTCCAAGACCTACGTTACTCCCCGTCGTCCGTTCGAAAAGCCACGTCTCGATGCGGAATTGAAGATTATTGGCCAGTACGGCCTGCGTAACAAGCGTGAGGTATGGCGTGTGAAGTACACGCTTGCCAAGATCCGCAAGGCTGCTCGTGAGTTGCTCACGCTGGAAGAGAAGGATGAGAAGCGCCTGTTCCAAGGTAACGCCCTGCTGCGTCGTCTGGTTCGCATCGGTGTGCTGGATGAGTCCCGCATGAAGCTCGATTACGTGCTCGGCTTGAGAATTGAGGATTTCCTTGAGCGCCGTCTGCAGACCCAGGTGTTCAAGCTGGGATTGGCCAAGTCGTACCATCACGCCCGCGTTCTGATCCGCCAGCGTCACATTCGTTCTCTAGAGAGATTTTGCGCTGGCCCCGTGCCGCCGCAAATGATCGTGAGTGCCACTTAGAATCAGAAGGGTCGCAAGATTTTTCGGTTTCTAACGCCTCACATACATACGTACACACGAAAAACAAGTTCAGTGACACGGCTTTACTTGTACGATGAAGCAGTTTCCTGGTTGGTCACCAACGCGC   ATTGGCGATCATTGGATCTATTCACTGCAAGAATAAGCCATTAAGAACTTGATGATTCGTGCTGAAACGTACTCGCCGATCCATGGAAGCAAGAATCAGATGTATTTCTTCCACATGCGCGATGCAGCGATGCA                                                                                                                                                                                                    ]
[+] EMBL BM655896             [                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                          ccGGTCGCAAGATTTTTCGGTTTCTAACGCCTCACATACATACGTACACACGAAAAACAAGTTCAGTGACACGGCTTTACTTGTACGATGAAGCAGTTTCCTGGTTGGTCACCAACGCGC   ATTGGCGATCATTGGATCTATTCACTGCAAGAATAAGCCATTAAGAACTTGATGATTCGTGCTGAAACGTACTCGCCGATCCATGGAAGCAAGAATCAGATGTATTTCTTCCACATGCGCGATGCAGCGATGCATTGAGGATCACTGGAAGGTTTTACTGTTGTATCGATTCGGAACGAGTGTCCGCAAGCAGGTCGTGAACGTTCCTTCGTTCATCGTCCGTCTGGATTCGCAGAAGCACATCGACTTCTCGCTGAAGTCGCCCTTCGGTGGTGGCCGTCCGGGTCGCGTCAAGAGGAAGAACCTGAAGAAGGGCCAGGGTGGCGGCGG]




>consensus_4866#0
CCGAACGAGGCAACACGTACGTGTTCGGCCCGTCGTGAGCAAAAATGGTGAACCACCGTA
TTCCTTCGGTCTTCTCCAAGACCTACGTTACTCCCCGTCGTCCGTTCGAAAAGCCACGTC
TCGATGCGGAATTGAAGATTATTGGCCAGTACGGCCTGCGTAACAAGCGTGAGGTATGGC
GTGTGAAGTACACGCTTGCCAAGATCCGCAAGGCTGCTCGTGAGTTGCTCACGCTGGAAG
AGAAGGATGAGAAGCGCCTGTTCCAAGGTAACGCCCTGCTGCGTCGTCTGGTTCGCATCG
GTGTGCTGGATGAGTCCCGCATGAAGCTCGATTACGTGCTCGGCTTGAGAATTGAGGATT
TCCTTGAGCGCCGTCTGCAGACCCAGGTGTTCAAGCTGGGATTAGCCAAGTCGTACCATC
ACGCTCGCGTTCTGATCCGCCAGCGTCACATTCGTTCTCTAGAGAGATTTTGCGCTGGCC
CCGTGCCGCCGCAAATGATCGTGAGTGCCACTTAGAATCAGAAGGGTCGCAAGATTTTTC
GGTTTCTAACGCCTCACATACATACGTACACACGAAAAACAAGTTCAGTGACACGGCTTT
ACTTGTACGATGAAGCAGTTTCCTGGTTGGTCACCAACGCGCATTGGCGATCATTGGATC
TATTCACTGCAAGAATAAGCCATTAAGAACTTGATGATTCGTGCTGAAACGTACTCGCCG
ATCCATGGAAGCAAGAATCAGATGTATTTCTTCCACATGCGCGATGCAGCGATGCATTGA
GGATCACTGGAAGGTTTTACTGTTGTATCGATTCGGAACGAGTGTCCGCAAGCAGGTCGT
GAACGTTCCTTCGTTCATCGTCCGTCTGGATTCGCAGAAGCACATCGACTTCTCGCTGAA
GTCGCCCTTCGGTGGTGGCCGTCCGGGTCGCGTCAAGAGGAAGAACCTGAAGAAGGGCCA
GGGTGGCGGCGG

consensusID : consensus_4866#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 218
fasta sequence

                              [CCGCGGACGCGTGGGGTGAAGTGAAAACGGTGCTCGGTCTCTCGGTGCTCTATCTTCTTTGCCTAAAGTAAAAGAAAAAATTTCCAAGATGCCGTTCAAGAGTATTAAGGCCCGTCAGATCTTCGACTCCCGTGGCAACCCGACCGTCGAGGTTGACCTGGTCACCGACCTGGGACTGTTCCGTGCTGCCGTCCCGTCTGGCGCGTCCACCGGCGTCC]

[+] EMBL BM612043             [CCGCGGACGCGTGGGGTGAAGTGAAAACGGTGCTCGGTCTCTCGGTGCTCTATCTTCTTTGCCTAAAGTAAAAGAAAAAATTTCCAAGATGCCGTTCAAGAGTATTAAGGCCCGTCAGATCTTCGACTCCCGTGGCAACCCGACCGTCGAGGTTGACCTGGTCACCGACCTGGGACTGTTCCGTGCTGCCGTCCCGTCTGGCGCGTCCACCGGCGTCC]




>consensus_4866#1
CCGCGGACGCGTGGGGTGAAGTGAAAACGGTGCTCGGTCTCTCGGTGCTCTATCTTCTTT
GCCTAAAGTAAAAGAAAAAATTTCCAAGATGCCGTTCAAGAGTATTAAGGCCCGTCAGAT
CTTCGACTCCCGTGGCAACCCGACCGTCGAGGTTGACCTGGTCACCGACCTGGGACTGTT
CCGTGCTGCCGTCCCGTCTGGCGCGTCCACCGGCGTCC

consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_4866#0      CCGAACGAGGCAACACGTACGTGTTCGGCCCGTCGTGAGCAAAAATGGTGAACCACCGTA 60
consensus_4866#1      ------------------------------------------------------------
                                                                                  

consensus_4866#0      TTCCTTCGGTCTTCTCCAAGACCTACGTTACTCCCCGTCGTCCGTTCGAAAAGCCACGTC 120
consensus_4866#1      ------------------------------------------------------------
                                                                                  

consensus_4866#0      TCGATGCGGAATTGAAGATTATTGGCCAGTACGGCCTGCGTAACAAGCGTGAGGTATGGC 180
consensus_4866#1      --------------------------------------------CCGCG-GACGCGTGGG 15
                                                                    *** ** *  *** 

consensus_4866#0      GTGTGAAGTACACGCTTGCCAAGATCCGCAAGGCTGCTCGTGAGTTGCTCACGCTGGAAG 240
consensus_4866#1      GTGAAGTGAAAACGGT-GCTCGGTCTCTCGGTGCTCTATCTTCTTTGCCTAAAGTAAAAG 74
                      ***    * * *** * **   *   * *   ***     *   ****  *   *  ***

consensus_4866#0      AGAAGGATGAGAAGCGCCTGTTCCAAGGTAACGCCCTGCTGCGTCGTCTGGTTCGCATCG 300
consensus_4866#1      AAAAAATTTCCAAGATGCCGTTCAAGAGTA-----TTAAGGC-CCGTCAGAT---CTTCG 125
                      * **   *   ***   * **** *  ***      *   **  **** * *   * ***

consensus_4866#0      GTGTGCTGGATGAGTCCCGCATGAAGCTCGATTACGTGCTCGGCTTGAGAATTGAGGATT 360
consensus_4866#1      ACTCCCGTGGCAACCCGACCGTCGAGGTTGACCTGGTCACCGACCTGGGACTG------T 179
                           *  *   *  *   * *  ** * **    **   ** * ** ** *       *

consensus_4866#0      TCCTTGAGCGCCGTCTGCAGACCCAGGTGTTCAAGCTGGGATTAGCCAAGTCGTACCATC 420
consensus_4866#1      TCCGTGC-TGCCGTC--CCGTCTGGCGCGTCCA--CCGGCGTCC---------------- 218
                      *** **   ******  * * *    * ** **  * **  *                  

consensus_4866#0      ACGCTCGCGTTCTGATCCGCCAGCGTCACATTCGTTCTCTAGAGAGATTTTGCGCTGGCC 480
consensus_4866#1      ------------------------------------------------------------
                                                                                  

consensus_4866#0      CCGTGCCGCCGCAAATGATCGTGAGTGCCACTTAGAATCAGAAGGGTCGCAAGATTTTTC 540
consensus_4866#1      ------------------------------------------------------------
                                                                                  

consensus_4866#0      GGTTTCTAACGCCTCACATACATACGTACACACGAAAAACAAGTTCAGTGACACGGCTTT 600
consensus_4866#1      ------------------------------------------------------------
                                                                                  

consensus_4866#0      ACTTGTACGATGAAGCAGTTTCCTGGTTGGTCACCAACGCGCATTGGCGATCATTGGATC 660
consensus_4866#1      ------------------------------------------------------------
                                                                                  

consensus_4866#0      TATTCACTGCAAGAATAAGCCATTAAGAACTTGATGATTCGTGCTGAAACGTACTCGCCG 720
consensus_4866#1      ------------------------------------------------------------
                                                                                  

consensus_4866#0      ATCCATGGAAGCAAGAATCAGATGTATTTCTTCCACATGCGCGATGCAGCGATGCATTGA 780
consensus_4866#1      ------------------------------------------------------------
                                                                                  

consensus_4866#0      GGATCACTGGAAGGTTTTACTGTTGTATCGATTCGGAACGAGTGTCCGCAAGCAGGTCGT 840
consensus_4866#1      ------------------------------------------------------------
                                                                                  

consensus_4866#0      GAACGTTCCTTCGTTCATCGTCCGTCTGGATTCGCAGAAGCACATCGACTTCTCGCTGAA 900
consensus_4866#1      ------------------------------------------------------------
                                                                                  

consensus_4866#0      GTCGCCCTTCGGTGGTGGCCGTCCGGGTCGCGTCAAGAGGAAGAACCTGAAGAAGGGCCA 960
consensus_4866#1      ------------------------------------------------------------
                                                                                  

consensus_4866#0      GGGTGGCGGCGG 972
consensus_4866#1      ------------