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These datas are free for academic use only, please contact me for any other use. Anopheles gambiae see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_4868#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 3 consensus length = 1327 fasta sequence
[CCGCAGCGATACAAGAATAAGAATAAAAGTTAATGGAACAAAACGATGTAACCACACAACAAAAATCAAATACTTTGCACACACAGCTAAACACCGTAAAAGAAGAGCGGTCAAAAGACGCTTCCGGGGATTGCTAACTATTGTATTATTTACAGAAACTTTTAATAATGCAGTACGAATAAAAATACACTTTCACACTAAGCATCTTATAAACCATCCCACTCATTCATTCATTCTCAAAATCCATAAGCAACGTAATGGTTGCGAAGACTCTTGGGCGAAAACACACAGACACTGGCAAATATTGTTAAAAGTATAAAACATATGAGCTAAAAGAGAACCTAATAGTTATTCCTTACTGGCATTTAAAGCAACAGGTGCGCAATATGCACAATTAAAAACACAAATTACACAATAAAAGCTACAAAACAACTATTGGACTGTGCTGGGTAGAGAGTACTGCTGGATAGCTAAGTGGGTATACAGAAGTTTTTTTTAATTTAAACGGCAAAACATGGGACAACAAGCACAATTTAAATAAACAAAAGAATTATAGAACAGGTAATAAATGTAGTCTTACTTCATAATTGCTTTTATCAGTTTGATTATCGCAAAAACAAAACACACTTTCAGTTTGCTTCACACAGGTGTGTGTTGAGTCCATACTCTCCCACCAAAAGATTTCCAAACTATTAACGTTTTCACGAATACAAAGATTTCAGAAGATGTAGCTAGGGTTTCAATAACTTCTTCCATCTTGTCATATTTGTTATGATTTTTTTCAGTAAGGTCTATAATATCGAATTTAACGTCAATTGACGAATTCACAAGCATCTTCTTAACTGCTAATGTCTAATGGAAAGTCTTTACTCATTTGATAGTTTTAGGAGCTAGGGATTGTTTTATACCAAAATTATATGTATTTTAAGAACAGGCAGCTAGGTAATAGTTTCTTTCGCTCTCTTGTTTATAATAAAAGAGTTGTGTAGATATATATTAAGAATGAGTTTGTTCGAAACCAACGATATGTATGAATGATTTAACGTATAAATTAAAACTCACTTTGCGCGTGGTTAACGAGAATCTATCGGAAAAAAATGTTATGTTAGTCCAATAGACCAGTACAAAAGGGTACGTAGTAGTGACAACAAACTGTTTGCTCTCATCGTGTTGATGAGTTTTACCATCTCTATGGCCTTCGTGTAACGTACCCTAGAGCGCAGTAACATGAAACTTTCTATTTGATTTGAGAAAATGAACAAAATGCGATCGTAGAAGATGAACACATTATTAACCAGCGTCCAACAACGAGGCATGCACGAACTCA]
[+] EMBL BM653585 [CCGCAGCGATACAAGAATAAGAATAAAAGTTAATGGAACAAAACGATGTAACCACACAACAAAAATCAAATACTTTGCACACACAGCTAAACACCGTAAAAGAAGAGCGGTCAAAAGACGCTTCCGGGGATTGCTAACTATTGTATTATTTACAGAAACTTTTAATAATGCAGTACGAATAAAAATACACTTTCACACTAAGCATCTTATAAACCATCCCACTCATTCATTCATTCTCAAAATCCATAAGCAACGTAATGGTTGCGAAGACTCTTGGGCGAAAACACACAGACACTGGCAAATATTGTTAAAAGTATAAAACATATGAGCTAAAAGAGAACCTAATAGTTATTCCTTACTGGCATTTAAAGCAACAGGTGCGCAATATGCACAATTAAAAACACAAATTACACAATAAAAGCTACAAAACAACTATTGGACTGTGCTGGGTAGAGAGTACTGCTGGATAGCTAAGTGGGTATACAGAAGTTTTTTTTAATTTAAACGGCAAAACATGGGACAACAAGCACAATTTAAATAAACAAAAGAATTATAGAACAGGTAATAAATGTAGTCTTACTTCATAATTGCTTTTATCAGTTTGATTAT ]
[+] EMBL BM589122 [ ccgGAAACTTTTAATAATGCAGTACGAATAAAAATACACTTTCACACTAAGCATCTTATAAACCATCCCACTCATTCATTCATTCTCAAAATCCATAAGCAACGTAATGGTTGCGAAGACTCTTGGGCGAAAACACACAGACACTGGCAAATATTGTTAAAAGTATAAAACATATGAGCTAAAAGAGAACCTAATAGTTATTCCTTACTGGCATTTAAAGCAACAGGTGCGCAATATGCACAATTAAAAACACAAATTACACAATAAAAGCTACAAAACAACTATTGGACTGTGCTGGGTAGAGAGTACTGCTGGATAGCTAAGTGGGTATACAGAAGTTTTTTTTAATTTAAACGGCAAAACATGGGACAACAAGCACAATTTAAATAAACAAAAGAATTATAGAACAGGTAATAAATGTAGTCTTACTTCATAATTGCTTTTATCAGTTTGATTATCGCAAAAACAAAACACACTTTCAGTTTGCTTCACACAGGTGTGTGTTGAGTCCATACTCTCCCACCAAAAGATTTCCAAACTATTAACGTTTTCACGAATACAAAGATTTCAGAAGATGTAGCTAGGGTTTCAATAACTTCTTCCATCTTGTCATATTTGTTATGATTTTTTTCAGTAAGGTCTATAATATCGAATTT ]
[+] EMBL BX627729 [ CCATACTCTCCCACCAAAAGATTTCCAAACTATTAACGTTTTCACGAATACAAAGATTTCAGAAGATGTAGCTAGGGTTTCAATAACTTCTTCCATCTTGTCATATTTGTTATGATTTTTTTCAGTAAGGTCTATAATATCGAATTTAACGTCAATTGACGAATTCACAAGCATCTTCTTAACTGCTAATGTCTAATGGAAAGTCTTTACTCATTTGATAGTTTTAGGAGCTAGGGATTGTTTTATACCAAAATTATATGTATTTTAAGAACAGGCAGCTAGGTAATAGTTTCTTTCGCTCTCTTGTTTATAATAAAAGAGTTGTGTAGATATATATTAAGAATGAGTTTGTTCGAAACCAACGATATGTATGAATGATTTAACGTATAAATTAAAACTCACTTTGCGCGTGGTTAACGAGAATCTATCGGAAAAAAATGTTATGTTAGTCCAATAGACCAGTACAAAAGGGTACGTAGTAGTGACAACAAACTGTTTGCTCTCATCGTGTTGATGAGTTTTACCATCTCTATGGCCTTCGTGTAACGTACCCTAGAGCGCAGTAACATGAAACTTTCTATTTGATTTGAGAAAATGAACAAAATGCGATCGTAGAAGATGAACACATTATTAACCAGCGTCCAACAACGAGGCATGCACGAACTCA]
consensusID : consensus_4868#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 683 fasta sequence
[CAGAATCCCCGAGGCATCTGGTCATATTTGTTATGATTTTTTTCAGTAAGGTCTATAATATCGAATTTAACGTCAATTGACGAATTCACAAGCATCTTCTTAACTGCTAATGTCTAATGGAAAGTCTTTACTCATTTGATAGTTTTAGGAGCTAGGGATTGTTTTATACCAAAATTATATGTATTTTAAGAACAGGCAGCTATGTAATAGTTTCTTTCGCTCTCTTGTTTATAATAAAAGAGTTGTGTAGATATATATTAAGAATGAGTTTGTTCGAAACCAACGATATGTATGAATGATTTAACGTATAAATTAAAACTCACTTTGCGCGTGGTTAACGAGAATCGATCGGAAAAAAATGTTATGTTAGTCCAATAGACCAGTACAAAAGGGTACGTAGTAGTGACAACAAACTGTTTGCTCTCATCGTGTTGATGAGTTTTACCATCTCTATGGCCTTCGTGTAACGTACCCTAGAGCGCAGTAACATGAAACTTTCTATTTGATTTGAGAAAATGAACAAAATGCGATCGTAAACGATGAACACATTATTAACAAGCGTCCAACAACGAGGCATGCACGAACTCATAATCTATTTATGCAGAAGCTTTGAAAAGCAAACACAAAACTCACTTAATAAGTAATCTATCAAACAAACAAACAAAAAACAAAACAAACACAAT]
[+] EMBL AL932465 [CAGAATCCCCGAGGCATCTGGTCATATTTGTTATGATTTTTTTCAGTAAGGTCTATAATATCGAATTTAACGTCAATTGACGAATTCACAAGCATCTTCTTAACTGCTAATGTCTAATGGAAAGTCTTTACTCATTTGATAGTTTTAGGAGCTAGGGATTGTTTTATACCAAAATTATATGTATTTTAAGAACAGGCAGCTATGTAATAGTTTCTTTCGCTCTCTTGTTTATAATAAAAGAGTTGTGTAGATATATATTAAGAATGAGTTTGTTCGAAACCAACGATATGTATGAATGATTTAACGTATAAATTAAAACTCACTTTGCGCGTGGTTAACGAGAATCGATCGGAAAAAAATGTTATGTTAGTCCAATAGACCAGTACAAAAGGGTACGTAGTAGTGACAACAAACTGTTTGCTCTCATCGTGTTGATGAGTTTTACCATCTCTATGGCCTTCGTGTAACGTACCCTAGAGCGCAGTAACATGAAACTTTCTATTTGATTTGAGAAAATGAACAAAATGCGATCGTAAACGATGAACACATTATTAACAAGCGTCCAACAACGAGGCATGCACGAACTCATAATCTATTTATGCAGAAGCTTTGAAAAGCAAACACAAAACTCACTTAATAAGTAATCTATCAAACAAACAAACAAAAAACAAAACAAACACAAT]
consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment
consensus_4868#0 CCGCAGCGATACAAGAATAAGAATAAAAGTTAATGGAACAAAACGATGTAACCACACAAC 60
consensus_4868#1 ------------------------------------------------------------
consensus_4868#0 AAAAATCAAATACTTTGCACACACAGCTAAACACCGTAAAAGAAGAGCGGTCAAAAGACG 120
consensus_4868#1 ------------------------------------------------------------
consensus_4868#0 CTTCCGGGGATTGCTAACTATTGTATTATTTACAGAAACTTTTAATAATGCAGTACGAAT 180
consensus_4868#1 ------------------------------------------------------------
consensus_4868#0 AAAAATACACTTTCACACTAAGCATCTTATAAACCATCCCACTCATTCATTCATTCTCAA 240
consensus_4868#1 ------------------------------------------------------------
consensus_4868#0 AATCCATAAGCAACGTAATGGTTGCGAAGACTCTTGGGCGAAAACACACAGACACTGGCA 300
consensus_4868#1 ------------------------------------------------------------
consensus_4868#0 AATATTGTTAAAAGTATAAAACATATGAGCTAAAAGAGAACCTAATAGTTATTCCTTACT 360
consensus_4868#1 ------------------------------------------------------------
consensus_4868#0 GGCATTTAAAGCAACAGGTGCGCAATATGCACAATTAAAAACACAAATTACACAATAAAA 420
consensus_4868#1 ------------------------------------------------------------
consensus_4868#0 GCTACAAAACAACTATTGGACTGTGCTGGGTAGAGAGTACTGCTGGATAGCTAAGTGGGT 480
consensus_4868#1 ------------------------------------------------------------
consensus_4868#0 ATACAGAAGTTTTTTTTAATTTAAACGGCAAAACATGGGACAACAAGCACAATTTAAATA 540
consensus_4868#1 ------------------------------------------------------------
consensus_4868#0 AACAAAAGAATTATAGAACAGGTAATAAATGTAGTCTTACTTCATAATTGCTTTTATCAG 600
consensus_4868#1 ------------------------------------------------------------
consensus_4868#0 TTTGATTATCGCAAAAACAAAACACACTTTCAGTTTGCTTCACACAGGTGTGTGTTGAGT 660
consensus_4868#1 ------------------------------------------------------------
consensus_4868#0 CCATACTCTCCCACCAAAAGATTTCCAAACTATTAACGTTTTCACGAATACAAAGATTTC 720
consensus_4868#1 ------------------------------------------------------------
consensus_4868#0 AGAAGATGTAGCTAGGGTTTCAATAACTTCTTC-CATCTTGTCATATTTGTTATGATTTT 779
consensus_4868#1 --------------------CAGAATCCCCGAGGCATCTGGTCATATTTGTTATGATTTT 40
** * * * ***** ********************
consensus_4868#0 TTTCAGTAAGGTCTATAATATCGAATTTAACGTCAATTGACGAATTCACAAGCATCTTCT 839
consensus_4868#1 TTTCAGTAAGGTCTATAATATCGAATTTAACGTCAATTGACGAATTCACAAGCATCTTCT 100
************************************************************
consensus_4868#0 TAACTGCTAATGTCTAATGGAAAGTCTTTACTCATTTGATAGTTTTAGGAGCTAGGGATT 899
consensus_4868#1 TAACTGCTAATGTCTAATGGAAAGTCTTTACTCATTTGATAGTTTTAGGAGCTAGGGATT 160
************************************************************
consensus_4868#0 GTTTTATACCAAAATTATATGTATTTTAAGAACAGGCAGCTAGGTAATAGTTTCTTTCGC 959
consensus_4868#1 GTTTTATACCAAAATTATATGTATTTTAAGAACAGGCAGCTATGTAATAGTTTCTTTCGC 220
****************************************** *****************
consensus_4868#0 TCTCTTGTTTATAATAAAAGAGTTGTGTAGATATATATTAAGAATGAGTTTGTTCGAAAC 1019
consensus_4868#1 TCTCTTGTTTATAATAAAAGAGTTGTGTAGATATATATTAAGAATGAGTTTGTTCGAAAC 280
************************************************************
consensus_4868#0 CAACGATATGTATGAATGATTTAACGTATAAATTAAAACTCACTTTGCGCGTGGTTAACG 1079
consensus_4868#1 CAACGATATGTATGAATGATTTAACGTATAAATTAAAACTCACTTTGCGCGTGGTTAACG 340
************************************************************
consensus_4868#0 AGAATCTATCGGAAAAAAATGTTATGTTAGTCCAATAGACCAGTACAAAAGGGTACGTAG 1139
consensus_4868#1 AGAATCGATCGGAAAAAAATGTTATGTTAGTCCAATAGACCAGTACAAAAGGGTACGTAG 400
****** *****************************************************
consensus_4868#0 TAGTGACAACAAACTGTTTGCTCTCATCGTGTTGATGAGTTTTACCATCTCTATGGCCTT 1199
consensus_4868#1 TAGTGACAACAAACTGTTTGCTCTCATCGTGTTGATGAGTTTTACCATCTCTATGGCCTT 460
************************************************************
consensus_4868#0 CGTGTAACGTACCCTAGAGCGCAGTAACATGAAACTTTCTATTTGATTTGAGAAAATGAA 1259
consensus_4868#1 CGTGTAACGTACCCTAGAGCGCAGTAACATGAAACTTTCTATTTGATTTGAGAAAATGAA 520
************************************************************
consensus_4868#0 CAAAATGCGATCGTAGAAGATGAACACATTATTAACCAGCGTCCAACAACGAGGCATGCA 1319
consensus_4868#1 CAAAATGCGATCGTAAACGATGAACACATTATTAACAAGCGTCCAACAACGAGGCATGCA 580
*************** * ****************** ***********************
consensus_4868#0 CGAACTCA---------------------------------------------------- 1327
consensus_4868#1 CGAACTCATAATCTATTTATGCAGAAGCTTTGAAAAGCAAACACAAAACTCACTTAATAA 640
********
consensus_4868#0 -------------------------------------------
consensus_4868#1 GTAATCTATCAAACAAACAAACAAAAAACAAAACAAACACAAT 683
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| Copyright Wed Dec 3 12:11:56 CET 2003 Hubert Wassner (hubert.wassner@noos.fr) | ||||