cluster # 4887

These datas are free for academic use only, please contact me for any other use.

Anopheles gambiae
cluster # 4887 cluster # 4887 Sequences # 4 consensus # 2

see consensus multiple alignment with clustalw

Direct access to contigs :

consensus_4887#0 length = 654 sequences # 2

consensus_4887#1 length = 634 sequences # 2

consensusID : consensus_4887#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 2
consensus length = 654
fasta sequence

                              [GGTGCGTACCCTACCCAAAACCCCTGAATGGAGCTGTACTACAACATTGTGTCGCCGCCGTGCCAGAGCGTGCTGCTCGTGGGCAAAAAACTGGGCATCACGTTCGACCTAAAGGAAGTGAATCCTCATCTCCCGGAAGTGCGCGAACAGTTGCGGAAGTTCAATCCCCAACACACCATACCGACGTTCATTGAGGATGGACACGTCATTTGGGAGTCGTACGCGATCGCCATCTATCTGGTGGAGAAGTACGGCAATGGTGACGATTCGCTCTACCCGCGTGATCCGAAGGTACGGTCCGTCGTGAACCAACGGCTGTTCTTCGACAATGGTCTAATGTTCAAGAGTGCCATCGAATACGTGGAGTGTATTTTGAAGAAAAAGCTCGAACCAACGGAAGAAATGCAGCAGCGGCTGAAGAAAGCGCTTGGATTGTTGGAGTCGTTCGTGAAGGAGCGAGCGTTCGTCGCCAGCGATCATCTAACGATCGCCGATATCTGTCTGCTGAGCAGTGTGACACTGCTAACCGGCATCAAGTACGATCTGGCCACCTTCCCGGGCATTACGGNCTGGGTCGCTCGTGTTACCGGTGAGCTTTCCGGACTACNGCGAGTTCCACAAGGAGCTGTACGAGAAGAGCATGGAGTACATTAA]

[+] EMBL BX625131             [GGTGCGTACCCTACCCAAAACCCCTGAATGGAGCTGTACTACAACATTGTGTCGCCGCCGTGCCAGAGCGTGCTGCTCGTGGGCAAAAAACTGGGCATCACGTTCGACCTAAAGGAAGTGAATCCTCATCTCCCGGAAGTGCGCGAACAGTTGCGGAAGTTCAATCCCCAACACACCATACCGACGTTCATTGAGGATGGACACGTCATTTGGGAGTCGTACGCGATCGCCATCTATCTGGTGGAGAAGTACGGCAATGGTGACGATTCGCTCTACCCGCGTGATCCGAAGGTACGGTCCGTCGTGAACCAACGGCTGTTCTTCGACAATGGTCTAATGTTCAAGAGTGCCATCGAATACGTGGAGTGTATTTTGAAGAAAAAGCTCGAACCAACGGAAGAAATGCAGCAGCGGCTGAAGAAAGCGCTTGGATTGTTGGAGTCGTTCGTGAAGGAGCGAGCGTTCGTCGCCAGCGATCATCTAACGATCGCCGATATCTGTCTGCTGAGCAGTGTGACACTGCTAACCGGCATCAAGTACGATCTGGCCACCTTCCCGGGCATTACGGNCTGGGTCGCTCGTGTTACCGGTGAGCTTTCCGGACTACNGCGAGTTCCACAAGGAGCTGTACGAGAAGAGCATG           ]
[+] EMBL AF515527             [                                    TACTACAACATTGTGTCGCCGCCGTGCCAGAGCGTGCTGCTCGTGGGCAAAAAGCTGGGCATCACGTTCGACCTAAAGGAAGTGAATCCTCATCTCCCGGAAGTGCGCGAACAGTTGCGGAAGTTCAATCCCCAACACACCATCCCGACGTTCATTGAGGATGGACACGTCATTTGGGAGTCGTACGCGATCGCCATCTATCTGGTGGAGAAGTACGGCAATGGCGACGATGCGCTCTACCCGCGTGGTCCGAAGGTTCGGTCCGTCGTGAACCAACGGCTGTTCTTCGACAATGGCCTTATGTTCAAGAGTGCCATCGAGTACGTGGAGTGTATTTTGAAGAAAAAGCTCGAACCAACGGAAGAAATGCAGCAGCGGCTGAAGAAAGCGCTTGGATTGTTGGAGTCGTTCGTGAAGGAGCGAGCGTTCGTCGCCAGCGATCATCTAACGATCGCCGATATCTGTCTGCTGAGCAGTGTGACGCTGCTAACCGGCATCAAGTACGATCTGGCCGCCTTCCCGGGCATTACGGCCTGGGTCGCTCGTGTTACCGGTGAGC TTCCGGACTACGGCGAGTTCCACAAGGAGCTGTACGAGAAGAGCATGGAGTACATTAA]




>consensus_4887#0
GGTGCGTACCCTACCCAAAACCCCTGAATGGAGCTGTACTACAACATTGTGTCGCCGCCG
TGCCAGAGCGTGCTGCTCGTGGGCAAAAAACTGGGCATCACGTTCGACCTAAAGGAAGTG
AATCCTCATCTCCCGGAAGTGCGCGAACAGTTGCGGAAGTTCAATCCCCAACACACCATA
CCGACGTTCATTGAGGATGGACACGTCATTTGGGAGTCGTACGCGATCGCCATCTATCTG
GTGGAGAAGTACGGCAATGGTGACGATTCGCTCTACCCGCGTGATCCGAAGGTACGGTCC
GTCGTGAACCAACGGCTGTTCTTCGACAATGGTCTAATGTTCAAGAGTGCCATCGAATAC
GTGGAGTGTATTTTGAAGAAAAAGCTCGAACCAACGGAAGAAATGCAGCAGCGGCTGAAG
AAAGCGCTTGGATTGTTGGAGTCGTTCGTGAAGGAGCGAGCGTTCGTCGCCAGCGATCAT
CTAACGATCGCCGATATCTGTCTGCTGAGCAGTGTGACACTGCTAACCGGCATCAAGTAC
GATCTGGCCACCTTCCCGGGCATTACGGNCTGGGTCGCTCGTGTTACCGGTGAGCTTTCC
GGACTACNGCGAGTTCCACAAGGAGCTGTACGAGAAGAGCATGGAGTACATTAA

consensusID : consensus_4887#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 2
consensus length = 634
fasta sequence

                              [ATGGAGCTGTACTACAACATTGTGTCGCCGCCGTGCCAGAGCGTGCTGCTCGTGGGCAAAAAGCTGGGCATCACGTTCGACCTGAAGGAAGTGAATCCTCATCTCCCGGAAGTGCGCGAACAGTTGCGGAAGGTTAGTGGGGCAACGGAAACGGGGAACGCCGAACGAATGTGCGCTTCATTAAGCTTCAATTAATCATTGGCCGCTCTGTGTTACCGCCCTTTAGTTCAATCCCCAACACACCATACCGACGTTCATTGAGGATGGACACGTCATTTGGGAGTCGTACGCGATCGCCATCTATCTGGTGGAGAAGTACGGCAATGGCGACGATGCGCTCTACCCGCGCGATCCGAAGGTACGGTCCGTCGTGAACCAACGGCTGTTCTTCGACAATGGCCTTATGTTCAAGAGTGCCATCGAGTACGTGGAGTGTATTTTGAAGAAAAAGCTCGAACCAACGGAAGAAATGCAGCAGCGGCTGAAGAAAGCGCTTGGATTGTTGGAGTCGTTCGTGAAGGAGCGAGCGTTCGTCGCCAGCGATCATCTAACGATCGCCGATATCTGTCTGCTGAGCAGTGTGACACTGCTAACCGGCATCAAGTACGATCTGGGCCACCTTCCCCGGGCATTA]

[+] EMBL BX620189             [ATGGAGCTGTACTACAACATTGTGTCGCCGCCGTGCCAGAGCGTGCTGCTCGTGGGCAAAAAGCTGGGCATCACGTTCGACCTGAAGGAAGTGAATCCTCATCTCCCGGAAGTGCGCGAACAGTTGCGGAAGGTTAGTGGGGCAACGGAAACGGGGAACGCCGAACGAATGTGCGCTTCATTAAGCTTCAATTAATCATTGGCCGCTCTGTGTTACCGCCCTTTAGTTCAATCCCCAACACACCATACCGACGTTCATTGAGGATGGACACGTCATTTGGGAGTCGTACGCGATCGCCATCTATCTGGTGGAGAAGTACGGCAATGGCGACGATGCGCTCTACCCGCGCGATCCGAAGGTACGGTCCGTCGTGAACCAACGGCTGTTCTTCGACAATGGCCTTATGTTCAAGAGTGCCATCGAGTACGTGGAGTGTATTTTGAAGAAAAAGCTCGAACCAACGGAAGAAATGCAGCAGCGGCTGAAGAAAGCGCTTGGATTGTTGGAGTCGTTCGTGAAGGAGCGAGCGTTCGTCGCCAGCGATCATCTAACGATCGCCGATATCTGTCTGCTGAGCAGTGTGACACTGCTAACCGGCATCAAGTACGATCTGGGCCACCTTCCCCGGGCATTA]
[+] EMBL BX613169             [                                                                                                                                                                                                                                                                                                                                                                                                                                           GTGGAGGGTATTTTGAAGAAAAAGCTCGAACCAACGGAAGAAATGCAGCAGCGGCCGAAGAAAGCGCGTGGATTGTTGGAGTCGTTCGTGAAGGAGCGAGCGTTCGTCGCCAGCGATCATC                                                                                      ]




>consensus_4887#1
ATGGAGCTGTACTACAACATTGTGTCGCCGCCGTGCCAGAGCGTGCTGCTCGTGGGCAAA
AAGCTGGGCATCACGTTCGACCTGAAGGAAGTGAATCCTCATCTCCCGGAAGTGCGCGAA
CAGTTGCGGAAGGTTAGTGGGGCAACGGAAACGGGGAACGCCGAACGAATGTGCGCTTCA
TTAAGCTTCAATTAATCATTGGCCGCTCTGTGTTACCGCCCTTTAGTTCAATCCCCAACA
CACCATACCGACGTTCATTGAGGATGGACACGTCATTTGGGAGTCGTACGCGATCGCCAT
CTATCTGGTGGAGAAGTACGGCAATGGCGACGATGCGCTCTACCCGCGCGATCCGAAGGT
ACGGTCCGTCGTGAACCAACGGCTGTTCTTCGACAATGGCCTTATGTTCAAGAGTGCCAT
CGAGTACGTGGAGTGTATTTTGAAGAAAAAGCTCGAACCAACGGAAGAAATGCAGCAGCG
GCTGAAGAAAGCGCTTGGATTGTTGGAGTCGTTCGTGAAGGAGCGAGCGTTCGTCGCCAG
CGATCATCTAACGATCGCCGATATCTGTCTGCTGAGCAGTGTGACACTGCTAACCGGCAT
CAAGTACGATCTGGGCCACCTTCCCCGGGCATTA

consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_4887#0      GGTGCGTACCCTACCCAAAACCCCTGAATGGAGCTGTACTACAACATTGTGTCGCCGCCG 60
consensus_4887#1      ---------------------------ATGGAGCTGTACTACAACATTGTGTCGCCGCCG 33
                                                 *********************************

consensus_4887#0      TGCCAGAGCGTGCTGCTCGTGGGCAAAAAACTGGGCATCACGTTCGACCTAAAGGAAGTG 120
consensus_4887#1      TGCCAGAGCGTGCTGCTCGTGGGCAAAAAGCTGGGCATCACGTTCGACCTGAAGGAAGTG 93
                      ***************************** ******************** *********

consensus_4887#0      AATCCTCATCTCCCGGAAGTGCGCGAACAGTTGCGGAAG--------------------- 159
consensus_4887#1      AATCCTCATCTCCCGGAAGTGCGCGAACAGTTGCGGAAGGTTAGTGGGGCAACGGAAACG 153
                      ***************************************                     

consensus_4887#0      ------------------------------------------------------------
consensus_4887#1      GGGAACGCCGAACGAATGTGCGCTTCATTAAGCTTCAATTAATCATTGGCCGCTCTGTGT 213
                                                                                  

consensus_4887#0      -------------TTCAATCCCCAACACACCATACCGACGTTCATTGAGGATGGACACGT 206
consensus_4887#1      TACCGCCCTTTAGTTCAATCCCCAACACACCATACCGACGTTCATTGAGGATGGACACGT 273
                                   ***********************************************

consensus_4887#0      CATTTGGGAGTCGTACGCGATCGCCATCTATCTGGTGGAGAAGTACGGCAATGGTGACGA 266
consensus_4887#1      CATTTGGGAGTCGTACGCGATCGCCATCTATCTGGTGGAGAAGTACGGCAATGGCGACGA 333
                      ****************************************************** *****

consensus_4887#0      TTCGCTCTACCCGCGTGATCCGAAGGTACGGTCCGTCGTGAACCAACGGCTGTTCTTCGA 326
consensus_4887#1      TGCGCTCTACCCGCGCGATCCGAAGGTACGGTCCGTCGTGAACCAACGGCTGTTCTTCGA 393
                      * ************* ********************************************

consensus_4887#0      CAATGGTCTAATGTTCAAGAGTGCCATCGAATACGTGGAGTGTATTTTGAAGAAAAAGCT 386
consensus_4887#1      CAATGGCCTTATGTTCAAGAGTGCCATCGAGTACGTGGAGTGTATTTTGAAGAAAAAGCT 453
                      ****** ** ******************** *****************************

consensus_4887#0      CGAACCAACGGAAGAAATGCAGCAGCGGCTGAAGAAAGCGCTTGGATTGTTGGAGTCGTT 446
consensus_4887#1      CGAACCAACGGAAGAAATGCAGCAGCGGCTGAAGAAAGCGCTTGGATTGTTGGAGTCGTT 513
                      ************************************************************

consensus_4887#0      CGTGAAGGAGCGAGCGTTCGTCGCCAGCGATCATCTAACGATCGCCGATATCTGTCTGCT 506
consensus_4887#1      CGTGAAGGAGCGAGCGTTCGTCGCCAGCGATCATCTAACGATCGCCGATATCTGTCTGCT 573
                      ************************************************************

consensus_4887#0      GAGCAGTGTGACACTGCTAACCGGCATCAAGTACGATCTGG-CCACCTTCCC-GGGCATT 564
consensus_4887#1      GAGCAGTGTGACACTGCTAACCGGCATCAAGTACGATCTGGGCCACCTTCCCCGGGCATT 633
                      ***************************************** ********** *******

consensus_4887#0      ACGGNCTGGGTCGCTCGTGTTACCGGTGAGCTTTCCGGACTACNGCGAGTTCCACAAGGA 624
consensus_4887#1      A----------------------------------------------------------- 634
                      *                                                           

consensus_4887#0      GCTGTACGAGAAGAGCATGGAGTACATTAA 654
consensus_4887#1      ------------------------------