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These datas are free for academic use only, please contact me for any other use. Anopheles gambiae see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_4891#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 1107 fasta sequence
[CCCGCGGTTATTTTTTTTTTTTTCCGGTTNTTCAAATCCAATTGGTTTTGTTTCCAGTGTTTATTTTTCACACGACAACCAAGGGGTGACCTCTGTACAGAGATCGCCTTGGAGACTCCCGCGCTTGACGGGGGAAGTAGTATCGCCTACAATGTTCAGTTCCATACGCGGCCTTCTGCGCTATTAAAACCCTAACTTATTGTGATTACACCTCATATTNTGCTCGCTTCCCTATGCGTACATTATCACNGGTAATTCTTACAATTTAACAGAACAAGGGCGACACACCGTTCGTCCTACCCTCTCTATGTCTAGTCTGTCTGTACCGTCTGACCCATCCGCGATGGNNTAGCGTTNGGTAAATGTGTAATTCCGAANTAGGGACGGGGACTACCTAANTTGTNGTAACNCGGAAATATCATAGTAATTTTATTACNCCACTATATCNAGTACAACACAGGACAAAAATTGGTTTGGCCAATAGANNAACNGGGACAAGCGGCNAAAAGGGGCACATAGGCGTTANTAAAGGGAATAACTCNCACCTTTGTCGCTAAACTAACAAAATTGGCGTATCTACCCTNCTTAAATACCNTATAACTACCAAGACCAGANNCATACTANCTAGGACACNNGATNAGGATGGGNTCCCCGCNACACTAGGTNCGGCCAACCGGTAAAAAGGNACAAGAACAATAGCATCCTTAAAGCCNACGGAGCGATCANGGACTANAACNANGGACTCACACAACAGCCCTACATCGNAACCCGNNGGCCANAAAGGCATAACAANGGNCGAACCGACCAAACCCACCNNAACTACCCCAAANCAANCCCTACCCGCGGGTCANACCAACGCNACACACCAGGGACGAGNCNAGNAANAGGGAAGNANCCACNGGCAACAGCAAGANGGANGGCAAAACAAAGCANGCAAGGACGCACANCCCATCGGAGGCACAGGAAAANAAACAACGAAGCTGCGNAAAACATAACCNCAGGCAACTGCCAANCCAGCCCACGACGAGGAGCANGAACGAGCGGGACANAGAAATCCAGACANGGCCGGCCNGACATCAACACGCAAANACNCGGGGCCACCGGGGN]
[+] EMBL AL695276 [CCCGCGGTTATTTTTTTTTTTTTCCGGTTNTTCAAATCCAATTGGTTTTGTTTCCAGTGTTTATTTTTCACACGACAACCAAGGGGTGACCTCTGTACAGAGATCGCCTTGGAGACTCCCGCGCTTGACGGGGGAAGTAGTATCGCCTACAATGTTCAGTTCCATACGCGGCCTTCTGCGCTATTAAAACCCTAACTTATTGTGATTACACCTCATATTNTGCTCGCTTCCCTATGCGTACATTATCACNGGTAATTCTTACAATTTAACAGAACAAGGGCGACACACCGTTCGTCCTACCCTCTCTATGTCTAGTCTGTCTGTACCGTCTGACCCATCCGCGATGGNNTAGCGTTNGGTAAATGTGTAATTCCGAANTAGGGACGGGGACTACCTAANTTGTNGTAACNCGGAAATATCATAGTAATTTTATTACNCCACTATATCNAGTACAACACAGGACAAAAATTGGTTTGGCCAATAGANNAACNGGGACAAGCGGCNAAAAGGGGCACATAGGCGTTANTAAAGGGAATAACTCNCACCTTTGTCGCTAAACTAACAAAATTGGCGTATCTACCCTNCTTAAATACCNTATAACTACCAAGACCAGANNCATACTANCTAGGACACNNGATNAGGATGGGNTCCCCGCNACACTAGGTNCGGCCAACCGGTAAAAAGGNACAAGAACAATAGCATCCTTAAAGCCNACGGAGCGATCANGGACTANAACNANGGACTCACACAACAGCCCTACATCGNAACCCGNNGGCCANAAAGGCATAACAANGGNCGAACCGACCAAACCCACCNNAACTACCCCAAANCAANCCCTACCCGCGGGTCANACCAACGCNACACACCAGGGACGAGNCNAGNAANAGGGAAGNANCCACNGGCAACAGCAAGANGGANGGCAAAACAAAGCANGCAAGGACGCACANCCCATCGGAGGCACAGGAAAANAAACAACGAAGCTGCGNAAAACATAACCNCAGGCAACTGCCAANCCAGCCCACGACGAGGAGCANGAACGAGCGGGACANAGAAATCCAGACANGGCCGGCCNGACATCAACACGCAAANACNCGGGGCCACCGGGGN]
consensusID : consensus_4891#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 3 consensus length = 870 fasta sequence
[TTTTTTTTTTCCTCCGTTTTTCAAATCAATTGGTTTTGTTTCCAGTGTTTATTTTTCACACGACAACCAAGGGGTGACCTCTGTACAGAGATCGCCTTGGAGACTCCCGCGCTTGACGGGGGAAGTAGTATCGCCTACAATGTTCAGTTCCATACGCGGCCTTCTGCGCTATTAAAACCCTAACTTTTGTGATTCACCTCATATTGCTCGCTTCCCTTGCGTCATTTCACGGTAATTCTTACAATTTAAAGAAAAGGGCACCACCGTCGTCCTCCCTCTTTGTCTGTCTGTCCGTCCGTCTGACCCATCGCGATGATGGTGTAGTGGTATTCGATGGCGGGACTCTATGTGTACGGAATTCATGTATTTCTTCCCCTTTTGTTTTTGCAAATGGTTGCGATGTTCGGCAGGGAAAGGGAATGGTTTTTTGGTTCTCCTGCGCTAATAAATGCGTTCTCTCCATCTTCTCAGCCGCTTCGCTGTTTGTTGTGGTTCGTTTTGTTGCACGTTTTTGTCGTCATGCT-TAGCAGGCGTTGCTTACTGCTATAACCTTTGTTCGTGGAAAGGATTTTGTTCCCCACCCTTTCCATAGCTCCGGTTTCAACAAACGGCAAGAAGAGAGCAAAAGAGAGAGAGAGAGAGACACTGTTGAGACTCACAGAGTGCTTTACTTCTCGCTGCTACCGCCGCGGGCGATTTTGCGCAACATTCGATTGCCGCAGATGAACGTGAACAGGGCCAGCGGGATCAGGTAGCGGATCGTGTCGAACATGTTCAACCGCAGCCAGAAGATGCCAAACAGCACCAGGATAGCACCGAGCCCGAGATGGAACCCGATCGCACCGAGCGACAGCGGGAAGTTCTTCACGG]
[-] EMBL CF541682 [TTTTTTTTTTCCTCCGTTTTTCAAATCAATTGGTTTTGTTTCCAGTGTTTATTTTTCACACGACAACCAAGGGGTGACCTCTGTACAGAGATCGCCTTGGAGACTCCCGCGCTTGACGGGGGAAGTAGTATCGCCTACAATGTTCAGTTCCATACGCGGCCTTCTGCGCTATTAAAACCCTAACTTTTGTGATTCACCTCATATTGCTCGCTTCCCTTGCGTCATTTCACGGTAATTCTTACAATTTAAAGAAAAGGGCACCACCGTCGTCCTCCCTCTTTGTCTGTCTGTCTGTCCGTCTGACCCATCGCGATGATGGTGTAGTGGTATTCGATGGCGGGACTCTATGTGTACGGAATTCATGTATTTCTTCCCCTTTTGTTTTTGCAAATGGTTGCGATGTTCGGCAGGGAAAGGGAATGGTTTTTTGGTTCTCCTGCGCTAATAAATGCGTTCTCTCTATCTTCTCAGCCGCTTCtc ]
[-] EMBL BM603540 [ CCTCTTTGTCTGTCTGTCCGTCCGTCTGACCCATCGCGATGATGGTGTAGTGGTATTCGATGGCGGGACTCTATGTGTACGGAATTCATGTATTTCTTCCCCTTTTGTTTTTGCAAATGGTTGCGATGTTCGGCAGGGAAAGGGAATGGTTTTTTGGTTCTCCTGCGCTAATAAATGCGTTCTCTCCATCTTCTCAGCCGCTTCGCTGTTTGTTGTGGTTCGTTTTGTTGCACGTTTTTGTCGTCATGCT TAGCAGGCGTTGCTTACTGCTATAACCTTTGTTCGTGGAAAGGATTTTGTTCCCCACCCTTTCCATAGCTCCGGTTTCAACAAACGGCAAGAAGAGAGCAAAAGAGAGAGAGAGAGAGACACTGTTGAGACTCACAGAGTGCTTTACTTCTCGCTGCTACCGCCGCGGGCGATTTTGCGCAACATTCGATTGCCGCAGATGAACGTGAACAGGGCCAGCGGGATCAGGTAGCGGATCGTGTCGAACATGTTCAACCGCAGCCAGAAGATGCCAAACAGCACCAGGATAGCACCGAGCCCGAGATGGAACCCGATCGCACCGAGCGACAGCGGGAAGTTCTTCACGG]
[-] EMBL CF541784 [ tTGTNTGTCCGTGCGTCTGACCCATCGCGGTGATGGTGTGGTGGTATTCGATGGCGGGACTCTATGTGTACGGAATTCATGTATTTCTTCCCCTTTTGTTTTTGCAAATGGTTGCGATGTTCGGCAGGGAAAGGGAATGGTTTTTTGGTTCTCCTGCGCTAATAAATGCGTTCTCTCCATCTTCTCAGTCGCTTCGCTGTTTGTTGTGGTTCGTTTTGTTGCACGTTTTTGTCGTCATGCTCTAGCAGGCGTTGCTTACTGCTAAAACCTTTGTTCGTGGAAAGGATTTTGTTCCCCACCCTTTCCATAGCTCCGGTTTCAACAAACGGCGAG AG GAG AAAGAG G GAGAGAGAGACACTGTTGAGACTCACAGAGTGCTTTACTTCTCGCTGCTACCGCCGCGGGCGATTTTGCGCAACATTCGATTGCCGCAGATGAACGTAAACAGGGCCAGCGGGATCAGGTAGCGGATCGTGTCGAACATGTTCA ]
consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment
consensus_4891#0 CCCGCGGTTATTTTTTTTTTTTTCCGGTTNTTCAAATCCAATTGGTTTTGTTTCCAGTGT 60
consensus_4891#1 -----------TTTTTTTTTTCCTCCGTTTTTCAAATC-AATTGGTTTTGTTTCCAGTGT 48
********** * *** ******** *********************
consensus_4891#0 TTATTTTTCACACGACAACCAAGGGGTGACCTCTGTACAGAGATCGCCTTGGAGACTCCC 120
consensus_4891#1 TTATTTTTCACACGACAACCAAGGGGTGACCTCTGTACAGAGATCGCCTTGGAGACTCCC 108
************************************************************
consensus_4891#0 GCGCTTGACGGGGGAAGTAGTATCGCCTACAATGTTCAGTTCCATACGCGGCCTTCTGCG 180
consensus_4891#1 GCGCTTGACGGGGGAAGTAGTATCGCCTACAATGTTCAGTTCCATACGCGGCCTTCTGCG 168
************************************************************
consensus_4891#0 CTATTAAAACCCTAACTTATTGTGATTACACCTCATATTNTGCTCGCTTCCCTATGCGTA 240
consensus_4891#1 CTATTAAAACCCTAACTT-TTGTGATT-CACCTCATATT--GCTCGCTTCCCT-TGCGT- 222
****************** ******** *********** ************ *****
consensus_4891#0 CATTATCACNGGTAATTCTTACAATTTAACAGAACAAGGGCGACACACCGTTCGTCCTAC 300
consensus_4891#1 CATT-TCACGG-TAATTCTTACAATTTAA-AGAA-AAGGGCACCAC------CGTCGTCC 272
**** **** * ***************** **** ****** *** **** * *
consensus_4891#0 CCTCTCTATGTCTAGTCTGTCTGTACCGTCTGACCCATCC--GCGATGGNNTAGCGTTNG 358
consensus_4891#1 TCCCTCTTTGTCT-GTCTGTCCGT-CCGTCTGACCCATCGCGATGATGGTGTAGTGGTAT 330
* **** ***** ******* ** ************** ***** *** * *
consensus_4891#0 GTAAATGTGTAATTCCGAANTAGGGACGGGGACTACCTAANTTGTNGTAACNCGGAAATA 418
consensus_4891#1 TCGATGGCGGGACTCT---ATGTGTACGGAATTCATGTATTTCTTCCCCTTTTGTT--TT 385
* * * * ** * * **** * ** * * * *
consensus_4891#0 TCATAGTAATTTTATTACNCCACTATATCNAGTACAACACAGGACAAAAATTGGTTTG-G 477
consensus_4891#1 TGCAAATGGTTGCGATGTTCGGCAG----GGAAAGGGAATGGTTTTTTGGTTCTCCTGCG 441
* * * ** * * * * * * ** ** *
consensus_4891#0 CCAATAGANNAACNGGGACAAGCGGCNAAAAGGGGCACATAGGCGTTANTAAAGGGAATA 537
consensus_4891#1 CTAATAAATGCGTTCTCTCCATCTTCTCAGCCGCTTCGCTGTTTGTTGTGGTTCGTTTTG 501
* **** * * * * * * * * *** * *
consensus_4891#0 ACTCNCACCTTTGTCGCTAAACTAACAAAATTGGCGTATCTACCCTNCTTAAATACCNTA 597
consensus_4891#1 TTGCACGTTTTTGTCGTCATGCT--------TAGCAGGCGTTGCTTACTGCTATAACCTT 553
* * ******* * ** * ** * * * ** *** * *
consensus_4891#0 TAACTACCAAGACCAGANNCATACTANCTAGGACACNNGATNAGGATGGGNTCCCCGCNA 657
consensus_4891#1 TGTTCGTGGAAA---GGATTTTGTTCCC-----CACCCTTTCCATA----GCTCCGGTTT 601
* * * * * * * *** * * ** *
consensus_4891#0 CACTAGGTNCGGCCAACCGGTAAAAAGGNACAAGAACAATAGCATCCTTAAAGCCNACGG 717
consensus_4891#1 CAACAAACGGCAAGAAGAGAGCAAAAGAGAGAGAGAGAGAGACACTGTTGAGACTCACAG 661
** * ** * ***** * * * * ** ** * * ** *
consensus_4891#0 AGCGATCANGGACT-ANAACNANGGACTCACACAACA--GCCCTACATCGNAACCCGNNG 774
consensus_4891#1 AGTGCTTTACTTCTCGCTGCTACCGCCGCGGGCGATTTTGCGCAACATTCGATTGCCGCA 721
** * * ** * * * * * * * ** * **** * *
consensus_4891#0 GCCANAAAGGCATAACAANGGNCGAACCGACCAAACCCACCNNAACTACCCCAAANCAAN 834
consensus_4891#1 GATGAACGTGAACAGGGCCAGCGGGATCAGGTAG-CGGATCGTGTCGAA--CATGTTCAA 778
* * * * * * * * * * * * * * * ** *
consensus_4891#0 CCCTACCCGCGGGTCANACCAACGCNACACACCAGGGACGAGNCNAGNAANAGGGAAGNA 894
consensus_4891#1 CCGCAGCCAGAAGATGCCAAACAGCACCAGGATAGCACCGAGCCCGAGATGGAACCCGAT 838
** * ** * * ** ** ** **** * * *
consensus_4891#0 NCCACNG-GCAACAGCAAGANGGANGGCAAAACAAAGCANGCAAGGACGCACANCCCATC 953
consensus_4891#1 CGCACCGAGCGACAGCGGGAAGTTCTTCACGG---------------------------- 870
*** * ** ***** ** * **
consensus_4891#0 GGAGGCACAGGAAAANAAACAACGAAGCTGCGNAAAACATAACCNCAGGCAACTGCCAAN 1013
consensus_4891#1 ------------------------------------------------------------
consensus_4891#0 CCAGCCCACGACGAGGAGCANGAACGAGCGGGACANAGAAATCCAGACANGGCCGGCCNG 1073
consensus_4891#1 ------------------------------------------------------------
consensus_4891#0 ACATCAACACGCAAANACNCGGGGCCACCGGGGN 1107
consensus_4891#1 ----------------------------------
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| Copyright Wed Dec 3 12:11:56 CET 2003 Hubert Wassner (hubert.wassner@noos.fr) | ||||