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Anopheles gambiae
cluster # 4903 cluster # 4903       Sequences # 4       consensus # 2


see consensus multiple alignment with clustalw

Direct access to contigs :
consensus_4903#0 length = 812 sequences # 1  
consensus_4903#1 length = 762 sequences # 3  

consensusID : consensus_4903#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 812
fasta sequence
                              [CGAGCAGAACCGGCTCGAGTTTGCGGTGTAGATACTCGAGCAGGGCTTCTACACGGTGCCGGTGTACAAGCAGCGCGAACCGACGCCCCCGCCCGACTACCTCGCCGCGGAGCGGGCGATGATGCCGGGCCCGATGGACATCGGGGACGACGCGCTCCGGCCGATCACGAGCAGCGAGTGCCGGTTTCTGGTGCGCTTCCTCTACCAGCTCAGCAGCAAGCTGAACGTGATGTTCGGCGACGACCTGCAGCGGCTGTGGCACCGGGACGGGCTCGTCGGCCGGCTGGCGCGCCGCACGCTCGAGCCGCCCACCACCATCTCGGAGTTTACCCGCATGCCGATCTGCACGCACGGCTCGAAAACGCTCGTTCGGACGAAGGTGGGCCCGCGCATCAGCCTGCGCTTTCTTGCCTCCTACACCTCGATCGTCACCGTCAGCTGCTCGTTCCTGGCCGGCTACCTTTTGTTCGGCACGCCGAGCTACGGCTTTATCGCCCTGCTGCTGGTGGCGTTCCTGTACATACTGGTCAAACCGGAAGGCAAGGCAAAGCACCGCACGCCCTAGCGCACTTCGAGTGAGGCGGGGGGTCTGGGCGATTTCCTGTATATTTACTTTTTATAAGTACCAAATGCCAATGGTACCAACGCGTGCATGGAAGGAATTGGCATAGATTATATTTAGACCATATGCTAAGCGAGGTAGAACGAGCGCAGTAAACCAATCGAATGCTCTGTGTGTACGCGTGTGTGTTGCCATCGTTGTCCGTGCGTCAGATGCGTGGAAGCTCACCTGTGTGCAGTTCTTCTGCACC]

[+] EMBL BX606162             [CGAGCAGAACCGGCTCGAGTTTGCGGTGTAGATACTCGAGCAGGGCTTCTACACGGTGCCGGTGTACAAGCAGCGCGAACCGACGCCCCCGCCCGACTACCTCGCCGCGGAGCGGGCGATGATGCCGGGCCCGATGGACATCGGGGACGACGCGCTCCGGCCGATCACGAGCAGCGAGTGCCGGTTTCTGGTGCGCTTCCTCTACCAGCTCAGCAGCAAGCTGAACGTGATGTTCGGCGACGACCTGCAGCGGCTGTGGCACCGGGACGGGCTCGTCGGCCGGCTGGCGCGCCGCACGCTCGAGCCGCCCACCACCATCTCGGAGTTTACCCGCATGCCGATCTGCACGCACGGCTCGAAAACGCTCGTTCGGACGAAGGTGGGCCCGCGCATCAGCCTGCGCTTTCTTGCCTCCTACACCTCGATCGTCACCGTCAGCTGCTCGTTCCTGGCCGGCTACCTTTTGTTCGGCACGCCGAGCTACGGCTTTATCGCCCTGCTGCTGGTGGCGTTCCTGTACATACTGGTCAAACCGGAAGGCAAGGCAAAGCACCGCACGCCCTAGCGCACTTCGAGTGAGGCGGGGGGTCTGGGCGATTTCCTGTATATTTACTTTTTATAAGTACCAAATGCCAATGGTACCAACGCGTGCATGGAAGGAATTGGCATAGATTATATTTAGACCATATGCTAAGCGAGGTAGAACGAGCGCAGTAAACCAATCGAATGCTCTGTGTGTACGCGTGTGTGTTGCCATCGTTGTCCGTGCGTCAGATGCGTGGAAGCTCACCTGTGTGCAGTTCTTCTGCACC]


>consensus_4903#0 CGAGCAGAACCGGCTCGAGTTTGCGGTGTAGATACTCGAGCAGGGCTTCTACACGGTGCC GGTGTACAAGCAGCGCGAACCGACGCCCCCGCCCGACTACCTCGCCGCGGAGCGGGCGAT GATGCCGGGCCCGATGGACATCGGGGACGACGCGCTCCGGCCGATCACGAGCAGCGAGTG CCGGTTTCTGGTGCGCTTCCTCTACCAGCTCAGCAGCAAGCTGAACGTGATGTTCGGCGA CGACCTGCAGCGGCTGTGGCACCGGGACGGGCTCGTCGGCCGGCTGGCGCGCCGCACGCT CGAGCCGCCCACCACCATCTCGGAGTTTACCCGCATGCCGATCTGCACGCACGGCTCGAA AACGCTCGTTCGGACGAAGGTGGGCCCGCGCATCAGCCTGCGCTTTCTTGCCTCCTACAC CTCGATCGTCACCGTCAGCTGCTCGTTCCTGGCCGGCTACCTTTTGTTCGGCACGCCGAG CTACGGCTTTATCGCCCTGCTGCTGGTGGCGTTCCTGTACATACTGGTCAAACCGGAAGG CAAGGCAAAGCACCGCACGCCCTAGCGCACTTCGAGTGAGGCGGGGGGTCTGGGCGATTT CCTGTATATTTACTTTTTATAAGTACCAAATGCCAATGGTACCAACGCGTGCATGGAAGG AATTGGCATAGATTATATTTAGACCATATGCTAAGCGAGGTAGAACGAGCGCAGTAAACC AATCGAATGCTCTGTGTGTACGCGTGTGTGTTGCCATCGTTGTCCGTGCGTCAGATGCGT GGAAGCTCACCTGTGTGCAGTTCTTCTGCACC



consensusID : consensus_4903#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 3
consensus length = 762
fasta sequence
                              [GGCACCGGGACGGGCTCGTCGGCCGGCTGGCGCGCCGCACGCTCGAGCCGCCCACCACCATCTCGGAGTTTACCCGCATGCCGATCTGCACGCACGGCTCGAAAACGCTCGTACGGACGAAGGTGGGCCCGCGCATCAGCCTGCGCTTTCTTGCCTCCTACACCTCGATCGTCACCGTCAGCTGCTCGTTCCTGGCCGGCTACCTTTTGTTCGGCACGCCGAGCTACGGCTTTATCGCCCTGCTGCTGGTGGCGTTCCTGTACATACTGGTCAAACCGGAAGGCAAGGCAAAGCACCGCACGCCCTAGCGCACTTCGGGTGAGGCGGGGGGTTTGGGCGATTTCCTGTATATTTACTTTTTATAAGTACCAAATGCCAATGGTACCAACGCGTGCATGGAAGGAATTGGCATAGATTATATTTAGACCATATGCTAAGCTAGGTAGAACGAGCGCAGTAAACCAATCGAATGCTCTGTGTGTACGCGTGTGTGTTGCCATCGTTGTCCGTGCGTCAGATGCGTGGAAGCTCACCTAACGCCGCGCCACAAAGCAAATCACAAGCTGTGTGCAGTTCTTCTGCACCTTAGGATAGAAAGGGAAAATTATAGTATATTTACTTCGTTAGTAAAATATTCAAACAAAACCTTTGAGCCTGTTTACGTTGAATTTAATTTTCACGAACTGAATTATTCACCATTGTACAATAGTTCACTGAGCAATAGTTTCTTCAGGTTAAATAAAAATAAACCCTGAAAAAAAA]

[+] EMBL BX614657             [GGCACCGGGACGGGCTCGTCGGCCGGCTGGCGCGCCGCACGCTCGAGCCGCCCACCACCATCTCGGAGTTTACCCGCATGCCGATCTGCACGCACGGCTCGAAAACGCTCGTACGGACGAAGGTGGGCCCGCGCATCAGCCTGCGCTTTCTTGCCTCCTACACCTCGATCGTCACCGTCAGCTGCTCGTTCCTGGCCGGCTACCTTTTGTTCGGCACGCCGAGCTACGGCTTTATCGCCCTGCTGCTGGTGGCGTTCCTGTACATACTGGTCAAACCGGAAGGCAAGGCAAAGCACCGCACGCCCTAGCGCACTTCGGGTGAGGCGGGGGGTTTGGGCGATTTCCTGTATATTTACTTTTTATAAGTACCAAATGCCAATGGTACCAACGCGTGCATGGAAGGAATTGGCATAGATTATATTTAGACCATATGCTAAGCTAGGTAGAACGAGCGCAGTAAACCAATCGAATGCTCTGTGTGTACGCGTGTGTGTTGCCATCGTTGTCCGTGCGTCAGATGCGTGGAAGCTCACCTAACGCCGCGCCACAAAGCAAATCACAAGCTGTGT                                                                                                                                                                                                 ]
[+] EMBL BX614352             [        GACGGGCTCGTCGGCCGGCTGGCGCGCCGCACGCTCGAGCCGCCCACCACCATCTCGGAGTTTACCCGCATGCCGATCTGCACGCACGGCTCGAAAACGCTCGTACGGACGAAGGTGGGCCCGCGCATCAGCCTGCGCTTTCTTGCCTCCTACACCTCGATCGTCACCGTCAGCTGCTCGTTCCTGGCCGGCTACCTTTTGTTCGGCACGCCGAGCTACGGCTTTATCGCCCTGCTGCTGGTGGCGTTCCTGTACATACTGGTCAAACCGGAAGGCAAGGCAAAGCACCGCACGCCCTAGCGCACTTCGGGTGAGGCGGGGGGTTTGGGCGATTTCCTGTATATTTACTTTTTATAAGTACCAAATGCCAATGGTACCAACGCGTGCATGGAAGGAATTGGCATAGATTATATTTAGACCATATGCTAAGCTAGGTAGAACGAGCGCAGTAAACCAATCGAATGCTCTGTGTGTACGCGTGTGTGTTGCCATCGTTGTCCGTGCGTCAGATGCGTGGAAGCTCACCTAACGCCGCGCCA                                                                                                                                                                                                                       ]
[-] EMBL AGA280274            [                                                                                                                                                                                                                                                                                                                                                                                                                AGGAATTGGCATAGATTATATTTGGCCCATATGCTAAGCGAGGTAGAACGAGCGCAGTAAACCAATCGAATGCTCTGTGTGTACGCGTGTGTGTTGCCATCGTTGTCCGTGCGTCAGATGCGTGGAAGCTCACCTAACGCCGCGCCACAAAGCAAATCACAAGCTGTGTGCAGTTCTTCTGCACCTTAGGATAGAAAGGGAAAATTATAGTATATTTACTTCGTTAGTAAAATATTCAAACAAAACCTTTGAGCCTGTTTACGTTGAATTTAATTTTCACGAACTGAATTATTCACCATTGTACAATAGTTCACTGAGCAATAGTTTCTTCAGGTTAAATAAAAATAAACCCTGAAAAAAAA]


>consensus_4903#1 GGCACCGGGACGGGCTCGTCGGCCGGCTGGCGCGCCGCACGCTCGAGCCGCCCACCACCA TCTCGGAGTTTACCCGCATGCCGATCTGCACGCACGGCTCGAAAACGCTCGTACGGACGA AGGTGGGCCCGCGCATCAGCCTGCGCTTTCTTGCCTCCTACACCTCGATCGTCACCGTCA GCTGCTCGTTCCTGGCCGGCTACCTTTTGTTCGGCACGCCGAGCTACGGCTTTATCGCCC TGCTGCTGGTGGCGTTCCTGTACATACTGGTCAAACCGGAAGGCAAGGCAAAGCACCGCA CGCCCTAGCGCACTTCGGGTGAGGCGGGGGGTTTGGGCGATTTCCTGTATATTTACTTTT TATAAGTACCAAATGCCAATGGTACCAACGCGTGCATGGAAGGAATTGGCATAGATTATA TTTAGACCATATGCTAAGCTAGGTAGAACGAGCGCAGTAAACCAATCGAATGCTCTGTGT GTACGCGTGTGTGTTGCCATCGTTGTCCGTGCGTCAGATGCGTGGAAGCTCACCTAACGC CGCGCCACAAAGCAAATCACAAGCTGTGTGCAGTTCTTCTGCACCTTAGGATAGAAAGGG AAAATTATAGTATATTTACTTCGTTAGTAAAATATTCAAACAAAACCTTTGAGCCTGTTT ACGTTGAATTTAATTTTCACGAACTGAATTATTCACCATTGTACAATAGTTCACTGAGCA ATAGTTTCTTCAGGTTAAATAAAAATAAACCCTGAAAAAAAA



consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_4903#0      CGAGCAGAACCGGCTCGAGTTTGCGGTGTAGATACTCGAGCAGGGCTTCTACACGGTGCC 60
consensus_4903#1      ------------------------------------------------------------
                                                                                  

consensus_4903#0      GGTGTACAAGCAGCGCGAACCGACGCCCCCGCCCGACTACCTCGCCGCGGAGCGGGCGAT 120
consensus_4903#1      ------------------------------------------------------------
                                                                                  

consensus_4903#0      GATGCCGGGCCCGATGGACATCGGGGACGACGCGCTCCGGCCGATCACGAGCAGCGAGTG 180
consensus_4903#1      ------------------------------------------------------------
                                                                                  

consensus_4903#0      CCGGTTTCTGGTGCGCTTCCTCTACCAGCTCAGCAGCAAGCTGAACGTGATGTTCGGCGA 240
consensus_4903#1      ------------------------------------------------------------
                                                                                  

consensus_4903#0      CGACCTGCAGCGGCTGTGGCACCGGGACGGGCTCGTCGGCCGGCTGGCGCGCCGCACGCT 300
consensus_4903#1      -----------------GGCACCGGGACGGGCTCGTCGGCCGGCTGGCGCGCCGCACGCT 43
                                       *******************************************

consensus_4903#0      CGAGCCGCCCACCACCATCTCGGAGTTTACCCGCATGCCGATCTGCACGCACGGCTCGAA 360
consensus_4903#1      CGAGCCGCCCACCACCATCTCGGAGTTTACCCGCATGCCGATCTGCACGCACGGCTCGAA 103
                      ************************************************************

consensus_4903#0      AACGCTCGTTCGGACGAAGGTGGGCCCGCGCATCAGCCTGCGCTTTCTTGCCTCCTACAC 420
consensus_4903#1      AACGCTCGTACGGACGAAGGTGGGCCCGCGCATCAGCCTGCGCTTTCTTGCCTCCTACAC 163
                      ********* **************************************************

consensus_4903#0      CTCGATCGTCACCGTCAGCTGCTCGTTCCTGGCCGGCTACCTTTTGTTCGGCACGCCGAG 480
consensus_4903#1      CTCGATCGTCACCGTCAGCTGCTCGTTCCTGGCCGGCTACCTTTTGTTCGGCACGCCGAG 223
                      ************************************************************

consensus_4903#0      CTACGGCTTTATCGCCCTGCTGCTGGTGGCGTTCCTGTACATACTGGTCAAACCGGAAGG 540
consensus_4903#1      CTACGGCTTTATCGCCCTGCTGCTGGTGGCGTTCCTGTACATACTGGTCAAACCGGAAGG 283
                      ************************************************************

consensus_4903#0      CAAGGCAAAGCACCGCACGCCCTAGCGCACTTCGAGTGAGGCGGGGGGTCTGGGCGATTT 600
consensus_4903#1      CAAGGCAAAGCACCGCACGCCCTAGCGCACTTCGGGTGAGGCGGGGGGTTTGGGCGATTT 343
                      ********************************** ************** **********

consensus_4903#0      CCTGTATATTTACTTTTTATAAGTACCAAATGCCAATGGTACCAACGCGTGCATGGAAGG 660
consensus_4903#1      CCTGTATATTTACTTTTTATAAGTACCAAATGCCAATGGTACCAACGCGTGCATGGAAGG 403
                      ************************************************************

consensus_4903#0      AATTGGCATAGATTATATTTAGACCATATGCTAAGCGAGGTAGAACGAGCGCAGTAAACC 720
consensus_4903#1      AATTGGCATAGATTATATTTAGACCATATGCTAAGCTAGGTAGAACGAGCGCAGTAAACC 463
                      ************************************ ***********************

consensus_4903#0      AATCGAATGCTCTGTGTGTACGCGTGTGTGTTGCCATCGTTGTCCGTGCGTCAGATGCGT 780
consensus_4903#1      AATCGAATGCTCTGTGTGTACGCGTGTGTGTTGCCATCGTTGTCCGTGCGTCAGATGCGT 523
                      ************************************************************

consensus_4903#0      GGAAGCTCACCT------------------------------GTGTGCAGTTCTTCTGCA 810
consensus_4903#1      GGAAGCTCACCTAACGCCGCGCCACAAAGCAAATCACAAGCTGTGTGCAGTTCTTCTGCA 583
                      ************                              ******************

consensus_4903#0      CC---------------------------------------------------------- 812
consensus_4903#1      CCTTAGGATAGAAAGGGAAAATTATAGTATATTTACTTCGTTAGTAAAATATTCAAACAA 643
                      **                                                          

consensus_4903#0      ------------------------------------------------------------
consensus_4903#1      AACCTTTGAGCCTGTTTACGTTGAATTTAATTTTCACGAACTGAATTATTCACCATTGTA 703
                                                                                  

consensus_4903#0      -----------------------------------------------------------
consensus_4903#1      CAATAGTTCACTGAGCAATAGTTTCTTCAGGTTAAATAAAAATAAACCCTGAAAAAAAA 762
                                                                                 




Copyright Wed Dec 3 12:11:56 CET 2003 Hubert Wassner    (hubert.wassner@noos.fr)