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These datas are free for academic use only, please contact me for any other use. Anopheles gambiae see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_4912#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 3 consensus length = 875 fasta sequence
[CCGCATCCATCCATAGCGGTCTTTCCAGAGCGGGAAACGGCGAGGGATAGTGCTTCATTCGTGCGAGTGTGTGTGTGAGAGAGAGAGAGAGAGTAGGAAGAAAAATGGGTCAAGCTGCGAGCCAGGAGGATGCGGAACAGGGTGGCGGCCAGGCCGGCGGCGGCGAGGAGGAGGAGGACGACGATGGAGGCATCATCCCGATGCGCTCGGATCGCTTCCTGGTGACGGACAGTGAAATTGCGTGCGAGGAGGCGGCACGATTGACGGCCGACACACAGGAATATACATCGCCGGACGATGACGATGGAGGGTGCGAGTACCACGATATGCCGCCCCCACCGGACGGAGGATACGGCTGGGTGATCGTATTCGCCTCGTTTATGTGCAACATGATCGTGGACGGCATCGCGTACACGTTCGGCGTGTTCCTGAACGAGTTCGTGGTGTACTTCGGCGAGGGCAAGGGTACGGTGGCCTGGGTGGGCAGCTTGCTCAGCGGTATGTA-CCTGAGCGCC-GGTCCGGTTGTGTCCGCGCTGGCCAACAAGTACGGCTG-CCGGGCGGTGGTGTATCGCGGGCAGCATCATCTCCT-GCGCGGCGTTTGCGCTCAGCACGCTCAGCACCTCCGTGACGATGCTGATGCTCACGTACGGCGTGAT-GGGCGGCA-TCGGGTTCGGGCTGATCTATCTGCCCGCGGTCGTGGCCGTCGGGTACTACTTCGAAACGAAGCGCTCGCTCGCCACCGGCATTGCCGTGTGCGGGTCCGGGTTCGGCACGTTCGCGTTCGCACCGCTCGCGAACATGCTGCTGGAAAACTTTGACTGGAAAAACTCCAACCTCATCCTGGCCGGGCTGATACTGAACTGTGCCGTGTTTGG]
[+] EMBL BM616740 [CCGCATCCATCCATAGCGGTCTTTCCAGAGCGGGAAACGGCGAGGGATAGTGCTTCATTCGTGCGAGTGTGTGTGTGAGAGAGAGAGAGAGAGTAGGAAGAAAAATGGGTCAAGCTGCGAGCCAGGAGGATGCGGAACAGGGTGGCGGCCAGGCCGGCGGCGGCGAGGAGGAGGAGGACGACGATGGAGGCATCATCCCGATGCGCTCGGATCGCTTCCTGGTGACGGACAGTGAAATTGCGTGCGAGGAGGCGGCACGATTGACGGCCGACACACAGGAATATACATCGCCGGACGATGACGATGGAGGGTGCGAGTACCACGATATGCCGCCCCCACCGGACGGAGGATACGGCTGGGTGATCGTATTCGCCTCGTTTATGTGCAACATGATCGTGGACGGCATCGCGTACACGTTCGGCGTGTTCCTGAACGAGTTCGTGGTGTACTTCGGCGAGGGCAAGGGTACGGTGGCCTGGGTGGGCAGCTTGCTCAGCGGTATGTA CCTGAGCGCC GGTCCGGTTGTGTCCGCGCTGGCCAACAAGTACGGCTG CCGGGCGGTGGTGTATCGCGGGCAGCATCATCTCCT GCGCGGCGTTTGCGCTCAGCACGCTCAGCACCTCCGTGACGATGCTGATGCTCACGTACGGCGTGATGGGGCGGCA TCGGGTTCGGGCTGATCTATCTGCC ]
[+] EMBL BM591431 [ ccgCAGGAGGATGCGGAACAGGGTGGCGGCCAGGCCGGCGGCGGCGAGGAGGAGGAGGACGACGATGGAGGCATCATCCCGATGCGCTCGGATCGCTTCCTGGTGACGGACAGTGAAATTGCGTGCGAGGAGGCGGCACGATTGACGGCCGACACACAGGAATATACATCGCCGGACGATGACGATGGAGGGTGCGAGTACCACGATATGCCGCCCCCACCGGACGGAGGATACGGCTGGGTGATCGTATTCGCCTCGTTTATGTGCAACATGATCGTGGACGGCATCGCGTACACGTTCGGCGTGTTCCTGAACGAGTTCGTGGTGTACTTCGGCGAGGGCAAGGGTACGGTGGCCTGGGTGGGCAGCTTGCTCAGCGGTATGTACCCTGAGCGCCGGGTCCGGTTGTGTCCGCGCTGGCCAACAAGTACGGCTGCCCGGGCGGTGGTGTATCGCGGGCAGCATCATCTCCTGGCGCGGCGTTTGCGCTCAGCACGCTCAGCACCTCCGTGACGATGCTGATGCTCACGTACGGCGTGAT GGGCGGCATTCGGGTTCGGGCTGATCTATCTGCCCGCGGTCGT ]
[-] EMBL AGA280520 [ TGTACTTCGGCGAGGGCAAGGGTACGGTGGCCTGGGTGGGCAGCTTGCTCAGCGGTATGTA CCTGAGCGCC GGTCCGGTTGTGTCCGCGCTGGCCAACAAGTACGGCTG CCGGGCGGT GTGTATCGCGGGCAGCATCATCTCCT GCGCGGCGTTTGCGCTCAGCACGCTCAGCACCTCCGTGACGATGCTGATGCTCACGTACGGCGTGAT GGGTGGCA TCGGGTTCGGGCTGATCTATCTGCCCGCGGTCGTGGCCGTCGGGTACTACTTCGAAACGAAGCGCTCGCTCGCCACCGGCATTGCCGTGTGCGGGTCCGGGTTCGGCACGTTCGCGTTCGCACCGCTCGCGAACATGCTGCTGGAAAACTTTGACTGGAAAAACTCCAACCTCATCCTGGCCGGGCTGATACTGAACTGTGCCGTGTTTGG]
consensusID : consensus_4912#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 583 fasta sequence
[CCGGTTGCGTACCGATACACCATACTGTACAGTACAATACGCGACGGGTCGGGTTTAGTGTCTCCCGGTCTGAGCTCTGCTAGTAATACGGTGTAACCGCCCTGCGAACGCATCCGCATACTGTGCGTTCGGCCCGGCCGGGTGTGGGTGACTACCAAGTTCACTTTCGCATGTGCGATCAGTGTGGTGTGGATTGGGGTTTTGGGAAACGTAGATCAAGCGATTCCCCGGGCATTCTAGGTTGCTCTTAGTGATGTGTGAGGTTCAATAAGGTGTGAAATTGAAATAGTGGTGCTAGAGTTCCGTTTCGTCTTCACATAGCTTGGATTATAAGTTCGTGTAGCAGCGTGCAACAGTGTGTCCAGTGCCAACCATGACCAGTAAAGCGAGCAAAACCACGACGGACAGTGAAATTGCGTGCGAGGAGGCGGCACGATTGACGGCCGACACACAGGAATATACATCGCCGGACGATGACGATGGAGGGTGCGAGTACCACGATATGCCGCCCCCACCGGACGGAGGATACGGCTGGGTGATCGTATTCGCCTCGTTTATGTGCAACATGATCGTGGACGGCATC]
[+] EMBL BM628639 [CCGGTTGCGTACCGATACACCATACTGTACAGTACAATACGCGACGGGTCGGGTTTAGTGTCTCCCGGTCTGAGCTCTGCTAGTAATACGGTGTAACCGCCCTGCGAACGCATCCGCATACTGTGCGTTCGGCCCGGCCGGGTGTGGGTGACTACCAAGTTCACTTTCGCATGTGCGATCAGTGTGGTGTGGATTGGGGTTTTGGGAAACGTAGATCAAGCGATTCCCCGGGCATTCTAGGTTGCTCTTAGTGATGTGTGAGGTTCAATAAGGTGTGAAATTGAAATAGTGGTGCTAGAGTTCCGTTTCGTCTTCACATAGCTTGGATTATAAGTTCGTGTAGCAGCGTGCAACAGTGTGTCCAGTGCCAACCATGACCAGTAAAGCGAGCAAAACCACGACGGACAGTGAAATTGCGTGCGAGGAGGCGGCACGATTGACGGCCGACACACAGGAATATACATCGCCGGACGATGACGATGGAGGGTGCGAGTACCACGATATGCCGCCCCCACCGGACGGAGGATACGGCTGGGTGATCGTATTCGCCTCGTTTATGTGCAACATGATCGTGGACGGCATC]
consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment
consensus_4912#0 CCGCATCCATCCATAGCGGTCTTTCCAGAGCGGGAAACGGCGAGGGATAGTGCTTCATTC 60
consensus_4912#1 ------------------------------------------------------------
consensus_4912#0 GTGCGAGTGTGTGTGTGAGAGAGAGAGAGAGAGTAGGAAGAAAAATGGGTCAAGCTGCGA 120
consensus_4912#1 ------------------------------------------------------------
consensus_4912#0 GCCAGGAGGATGCGGAACAGGGTGGCGGCCAGGCCGGCGGCGGCGAGGAGGAGGAGGACG 180
consensus_4912#1 ------------------------------------------------------------
consensus_4912#0 ACGATGGAGGCATCATCCCGATGCGCTCGGATCGCTTCCTGGTGACGGACAGTGAAATTG 240
consensus_4912#1 ------------------------------------------------------------
consensus_4912#0 CGTGCGAGGAGGCGGCACGATTGACGGCCGACACACAGGAATATACATCGCCGGACGATG 300
consensus_4912#1 ----------------CCGGTTGCGTACCGATACACCATACTGTACAGTACAATACG-CG 43
** *** **** **** * * **** * *** *
consensus_4912#0 ACGATGGAGGGTGCGAGTACCACGATATGC-CGCCCCCACCGGACGGAGGATACGGCTGG 359
consensus_4912#1 ACGGGTCGGGTTTAGTGTCTCCCGGTCTGAGCTCTGCTAGTAATACGGTGTAACCGCCCT 103
*** ** * * ** * ** * ** * * * * * * ** **
consensus_4912#0 GTGATCGTATTCGCCTCGTTTATGTGCAACATGATCGTGGACGGCATCGCGTACACGTTC 419
consensus_4912#1 GCGAACGCATCCGCATACTGTGCGTTCGGCCCGGCCGGGTGTGG-GTGACTACCAAGTTC 162
* ** ** ** *** * * * ** * * * ** * ** * * ** ****
consensus_4912#0 GGCGTGTTCCTGAACGAGTT-CGTGGTGTACTTCGGCGAGGGCAAGGGTACGGTGGCCTG 478
consensus_4912#1 A-CTTTCGCATGTGCGATCAGTGTGGTGTGGATTGG---GGTTTTGGGAAACGTAGATCA 218
* * * ** *** ******* * ** ** *** * ** *
consensus_4912#0 GGTGGGCAGCTTGCTCAGCGGTATGTACCTGAGCGCCGGTCCGGTTGTGTCCGCGCTGGC 538
consensus_4912#1 AGCGA-----TTCCCCGG----GCATTCTAGGTTGCTCTTAGTGATGTGTGAG-GTTCAA 268
* * ** * * * * * * ** * * ***** * * *
consensus_4912#0 CAACAAGTACGGCTGCCGGGCGGTGGTGTATCGCGGGCAGCATCATCTCCTGCGCGGCGT 598
consensus_4912#1 TAAGGTGTGAAATTG--AAATAGTGGTGC-TAGAGTTCCGTTTCGTCTTC-ACATAGCTT 324
** ** ** ****** * * * * * ** *** * * ** *
consensus_4912#0 TTGCGCTCAGCACGCTCAGCACCTCCGTGACGATG---CTGATGCT---CACGTACGGCG 652
consensus_4912#1 GGATTATAAGTTCGTGTAGCAGCGT-GCAACAGTGTGTCCAGTGCCAACCATGACCAGTA 383
* ** ** **** * * ** ** * *** ** * * *
consensus_4912#0 TGATGGGCGGCATCGGGTTCGGGCTGATCTATCTGCCCGCGGTCGTGGCCGTCGGGTACT 712
consensus_4912#1 AAGCGAGCAAAACCACGAC--GGACAGTGAAATTGCGTGCGAG-GAGGCGGCACGATTGA 440
* ** * * * ** * * *** *** * *** * * *
consensus_4912#0 ACTTCGAAACGAAGCGCTCGCTCGCCACCGG-CATTGCCGTGTGCGGGTCCGGGTTCGGC 771
consensus_4912#1 CGGCCGACACACAGGAAT-ATACATCGCCGGACGATGACGATGGAGGGTGCGAGTACCAC 499
*** ** ** * * * **** * ** ** * **** ** ** * *
consensus_4912#0 ACGTTCGCGTTCGCACCGCTCGCGAACATGCTGCTGGAAAAC----TTTGACTGGAAAAA 827
consensus_4912#1 GATATGCCGCCCCCACCGGACG-GAGGATACGGCTGGGTGATCGTATTCGCCTCGTTTAT 558
* ** * ***** ** ** ** * ***** * ** * ** * *
consensus_4912#0 CTCCAACCTCATCCTGGCCGGGCTGATACTGAACTGTGCCGTGTTTGG 875
consensus_4912#1 GTGCAACATGATCGTGGACGGCATC----------------------- 583
* **** * *** *** *** *
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| Copyright Wed Dec 3 12:11:56 CET 2003 Hubert Wassner (hubert.wassner@noos.fr) | ||||