These datas are free for academic use only, please contact me for any other use. Anopheles gambiae see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_4933#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 2 consensus length = 543 fasta sequence [CCGCGGAATCTGTTTGTTTGTTTTTTTTTAGACAAACTCCGTAATGCACAGGATGCATGCGC----AAAAAAAACACGAACGAGTTGACCGTTCGCGCAAGTTTATATTTATAACAATTAGCTTCATACGACAGGACGACGGGACGATGGGTCACCGGGAAAAAG-GCACACACACACAGCGACTAGGGCCCTAAACGAACTGATATTCCGATAACGTAAAAGTGGGTAGGGGGGGGGGGGGCAAACAATTTTGGGTGATTGAAATCAATGTGGCGATGTGTGCAGTAGTGAGCAAAGTTAGTGAGCCGCATGGCATGGCAGCAAACTTTGAAACCCTTCCGCAAGAAAAAAGAAACAATTAATTAACGAATGGCAGACATAGAAATTACCGCAAAAAAAAACAAGACTTCACTTACAGCAAATAAAATAGTCGATCATCAAAATTCGGTTTAGCTTGTAGCATGGTTTTTGGCAAGGAGCTACACAGTAAAGTCACATAAATGCAGAGATGATAAAACTTATGGCAAAATTCATTACTATCATTACG] [+] EMBL BM635210 [CCGCGGAATCTGTTTGTTTGTTTTTTTTTAGACAAACTCCGTAATGCACAGGATGCATGCGC AAAAAAAACACGAACGAGTTGACCGTTCGCGCAAGTTTATATTTATAACAATTAGCTTCATACGACAGGACGACGGGACGATGGGTCACCGGGAAAAAG GCACACACACACAGCGACTAGGGCCCTAAACGAACTGATATTCCGATAACGTAAAAGTGGGTAGGGGGGGGGGGGGCAAACAATTTTGGGTGATTGAAATCAATGTGGCGATGTGTGCAGTAGTGAGCAAAGTTAGTGAGCCGCATGGCATGGCAGCAAACTTTGAAACCCTTCCGCAAGAAAAAAGAAACAATTAATTAACGAATGGCAGACATAGAAATTACCGCAAAAAAAAACAAGACTTCACTTACAGCAAATAAAATAGTCGATCATCAAAATTCGGTTTAGCTTGTAGCATGGTTTTTGGCAAGGAGCTACACAGTAAAGTCACATAAATGCAGAGATGATAAAACTTATGGCAAAATTCATTACTATCATTACG] [+] EMBL AGA281082 [ TTTTTTTTAGACAAACTCCGTAATGCACAGGATGCATGCGCAAAAAAAAAAAACACGAACGAGTTGACCGTTCGCGCAAGTTTATATTTATAACAATTAGCTTCATACGACAGGACGACGGGACGATGGGTCACCGGGAAAAGGCACACACACACACAGCGACTAGGGCCCT AACGAACTGATATTCCGATAACGATAAAGTGGGTA GGGGGGGCAAACAATTTTGGGTGATTGAAATCCATGTGGCGATGCGTGCAGTAATGAGCAGAGTTAGTGAGCC ] consensusID : consensus_4933#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 497 fasta sequence [CCGCCCACGCGTCCGCCCACGCGTCCGAATTTTGGGTGATTGAAATCGATGTGGCGATGCGTGCAGTAGTGAGCAGAGTTAGTGAGCCGCCATCCATCCTACTCATGGCAGCAAACTTTGAACCCCTTCCGTAAGAAAAAGAAACAAGTAATTAACGAATGGCAGACATACAAATTACCGCAAAAAAACAAGAGTTCACTTACAGCAAATAAAATAGTCGATCATCAAAATTCGGTTTAGCTTGTAGCATGGTTTTTGGCAAGGAGCTACACAGTAAAGTCACATAAATGCAGTTGATAAAACTTATGGCAAAATTCATTACTATCATTACGATAAAAAGAAATGAAGAAAACAACATTAAACTACGGCCGCCACTATACTCTCACCAAAATCAAACTAATCGTATGACAAAGTAACACACATTAGCAGCAGGCGGGCGCACGACAACTTGTACCGAGAAGAGGAGGTGTACCGGTGCAAAGGGCAGCAACGGTCAT] [+] EMBL BM585345 [CCGCCCACGCGTCCGCCCACGCGTCCGAATTTTGGGTGATTGAAATCGATGTGGCGATGCGTGCAGTAGTGAGCAGAGTTAGTGAGCCGCCATCCATCCTACTCATGGCAGCAAACTTTGAACCCCTTCCGTAAGAAAAAGAAACAAGTAATTAACGAATGGCAGACATACAAATTACCGCAAAAAAACAAGAGTTCACTTACAGCAAATAAAATAGTCGATCATCAAAATTCGGTTTAGCTTGTAGCATGGTTTTTGGCAAGGAGCTACACAGTAAAGTCACATAAATGCAGTTGATAAAACTTATGGCAAAATTCATTACTATCATTACGATAAAAAGAAATGAAGAAAACAACATTAAACTACGGCCGCCACTATACTCTCACCAAAATCAAACTAATCGTATGACAAAGTAACACACATTAGCAGCAGGCGGGCGCACGACAACTTGTACCGAGAAGAGGAGGTGTACCGGTGCAAAGGGCAGCAACGGTCAT] consensusID : consensus_4933#2 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 344 fasta sequence [AGCTTCATACGACAGGACGACGGGACGATGGGTCACCGGGAAAAGGCACACACACACACAGCGACTAGGGCCCTAACGAACTGATATTCCGATAACGATAAAGTGGGTAGGGGGGGCAAACAATTTTGGGTGATTGAAATCGATGTGGCGATGCGTGCAGTAGTGAGCAGAGTTAGTGAGCCGCCATCCATCCTACTCATGGCAGCAAACTTTGAACCCCTTCCGTAAGAAAAAGAAACAAGTAATTAACGAATGGCAGACATACAAATTACCGCAAAAAAACAAGAGTTCACTTACAGCAAATAAAATAGTCGATCATCAAAATTCGGTTTAGCTTGTAGCAT] [-] EMBL AGA282710 [AGCTTCATACGACAGGACGACGGGACGATGGGTCACCGGGAAAAGGCACACACACACACAGCGACTAGGGCCCTAACGAACTGATATTCCGATAACGATAAAGTGGGTAGGGGGGGCAAACAATTTTGGGTGATTGAAATCGATGTGGCGATGCGTGCAGTAGTGAGCAGAGTTAGTGAGCCGCCATCCATCCTACTCATGGCAGCAAACTTTGAACCCCTTCCGTAAGAAAAAGAAACAAGTAATTAACGAATGGCAGACATACAAATTACCGCAAAAAAACAAGAGTTCACTTACAGCAAATAAAATAGTCGATCATCAAAATTCGGTTTAGCTTGTAGCAT] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_4933#0 CCGCGGAATCTGTTTGTTTGTTTTTTTTTAGACAAACTCCGTAATGCACAGGATGCATGC 60 consensus_4933#2 ------------------------------------------------------------ consensus_4933#1 ------------------------------------------------------------ consensus_4933#0 GCAAAAAAAACACGAACGAGTTGACCGTTCGCGCAAGTTTATATTTATAACAATTAGCTT 120 consensus_4933#2 -------------------------------------------------------AGCTT 5 consensus_4933#1 ------------------------------------------------------------ consensus_4933#0 CATACGACAGGACGACGGGACGATGGGTCACCGGGAAAAAG-GCACACACACACAGCGAC 179 consensus_4933#2 CATACGACAGGACGACGGGACGATGGGTCACCGGGAAAAGGCACACACACACACAGCGAC 65 consensus_4933#1 ------------------------------------------------------------ consensus_4933#0 TAGGGCCCTAAACGAACTGATATTCCGATAACGTAAAAGTGGGTAGGGGGGGGGGGGGCA 239 consensus_4933#2 TAGGGCCCTAA-CGAACTGATATTCCGATAACGATAAAGTGGGTAGGGGGGG------CA 118 consensus_4933#1 ------------------------CCGCCCACGCGTCCGCCCACGCGTCCG--------- 27 *** *** * * * consensus_4933#0 AACAATTTTGGGTGATTGAAATCAATGTGGCGATGTGTGCAGTAGTGAGCAAAGTTAGTG 299 consensus_4933#2 AACAATTTTGGGTGATTGAAATCGATGTGGCGATGCGTGCAGTAGTGAGCAGAGTTAGTG 178 consensus_4933#1 ---AATTTTGGGTGATTGAAATCGATGTGGCGATGCGTGCAGTAGTGAGCAGAGTTAGTG 84 ******************** *********** *************** ******** consensus_4933#0 AGCCGC-ATGG--------CATGGCAGCAAACTTTGAAACCCTTCCGCAAGAAAAAAGAA 350 consensus_4933#2 AGCCGCCATCCATCCTACTCATGGCAGCAAACTTTGAACCCCTTCCGTAAGAAAAA-GAA 237 consensus_4933#1 AGCCGCCATCCATCCTACTCATGGCAGCAAACTTTGAACCCCTTCCGTAAGAAAAA-GAA 143 ****** ** ******************* ******** ******** *** consensus_4933#0 ACAATTAATTAACGAATGGCAGACATAGAAATTACCGCAAAAAAAAACAAGACTTCACTT 410 consensus_4933#2 ACAAGTAATTAACGAATGGCAGACATACAAATTACCGCAAAAAA--ACAAGAGTTCACTT 295 consensus_4933#1 ACAAGTAATTAACGAATGGCAGACATACAAATTACCGCAAAAAA--ACAAGAGTTCACTT 201 **** ********************** **************** ****** ******* consensus_4933#0 ACAGCAAATAAAATAGTCGATCATCAAAATTCGGTTTAGCTTGTAGCATGGTTTTTGGCA 470 consensus_4933#2 ACAGCAAATAAAATAGTCGATCATCAAAATTCGGTTTAGCTTGTAGCAT----------- 344 consensus_4933#1 ACAGCAAATAAAATAGTCGATCATCAAAATTCGGTTTAGCTTGTAGCATGGTTTTTGGCA 261 ************************************************* consensus_4933#0 AGGAGCTACACAGTAAAGTCACATAAATGCAGAGATGATAAAACTTATGGCAAAATTCAT 530 consensus_4933#2 ------------------------------------------------------------ consensus_4933#1 AGGAGCTACACAGTAAAGTCACATAAATGCAGT--TGATAAAACTTATGGCAAAATTCAT 319 consensus_4933#0 TACTATCATTACG----------------------------------------------- 543 consensus_4933#2 ------------------------------------------------------------ consensus_4933#1 TACTATCATTACGATAAAAAGAAATGAAGAAAACAACATTAAACTACGGCCGCCACTATA 379 consensus_4933#0 ------------------------------------------------------------ consensus_4933#2 ------------------------------------------------------------ consensus_4933#1 CTCTCACCAAAATCAAACTAATCGTATGACAAAGTAACACACATTAGCAGCAGGCGGGCG 439 consensus_4933#0 ---------------------------------------------------------- consensus_4933#2 ---------------------------------------------------------- consensus_4933#1 CACGACAACTTGTACCGAGAAGAGGAGGTGTACCGGTGCAAAGGGCAGCAACGGTCAT 497 |
Copyright Wed Dec 3 12:11:56 CET 2003 Hubert Wassner (hubert.wassner@noos.fr) | ||||