cluster # 4954

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Anopheles gambiae
cluster # 4954 cluster # 4954 Sequences # 4 consensus # 2

see consensus multiple alignment with clustalw

Direct access to contigs :

consensus_4954#0 length = 783 sequences # 2

consensus_4954#1 length = 559 sequences # 2

consensusID : consensus_4954#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 2
consensus length = 783
fasta sequence

                              [TTTTTTTTTTTTTTTTTTTTTCTTTCTGCCACCGATATGTGTCTTACACGGCGGGGGTCGTTTTTATTTATTTATTTTTTTTACAGATCTATAAATAGTATTTGCCTGTGCTGCTTTATATCGTA-CCTTTTGCTCTGTACCGTCGTAAAGTATCGCACAGATAACAGATTTGCGTCGATCAAGAAGTCGATCGGTGGGCTAGGGGAAGCTACACTGTGCTGGCAGCTATCTCCAGATACTCCCTGGCCGCCTCGCACAGTGTCCGCACGCTGCGGCGCAGATAATCCGGCTCGTGGAACGCAAACGTGAGGCGCAGAAAGTGGCGCGCCTCCTTCGCGAAAGAGAACCGTACGCCGGGAATGGCGGAAACGCGATACTTCTCCAAACAGTACCGATTAAACTCGGCACAGTCGATGTGCGATGGGAAGCGGATCCACACGAAGTACCCGCCGTTCGGTTTGCGGAAGCTGCAGCCGGCGGGAAGGTGCGCCTGTAGCGTTTCCGCCATCGCGTCCAGCCGTGCGGCGTAGTTGGTGCGGTAGTGGTCCAGCTGTCGCCGTGCCAAGCCCATCTGGATGAGGGTGGCCACTACACCGCCGGTGTAGTTGTTGGCCGCACCTCCACTCATGAGCACTCCACTGGGGGGGGTGGGAAAAAAAGGAATTTGCATGCATTAAAATCATTCTCCTCAGATCCCAAAGCCCTTTTTGTAGGCGACGAACCGCAACACGGCCCCTCCTACCTGTTGCGGAATGCTTCGACACAGCGCGGAGGACACTCCAT]

[+] EMBL AGA281701            [TTTTTTTTTTTTTTTTTTTTTCTTTCTGCCACCGATATGTGTCTTACACGGCGGGGGTCGTTTTTATTTATTTATTTTTTTTACAGATCTATAAATAGTATTTGCCTGTGCTGCTTTATATCGTA CCTTTTGCTCTGTACCGTCGTAAAGTATCGCACAGATAACAGATTTGCGTCGATCAAGAAGTCGATCGGTGGGCTAGGGGAAGCTACACTGTGCTGGCAGCTATCTCCAGATACTCCCTGGCCGCCTCGCACAGTGTCCGCAC                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                   ]
[+] EMBL BX609101             [                                  ATATGTGTCTTACACGGCGGGGGTCGTTTTTATTTATTTATTTTTTTTACAGATCTATAAATAGTATTTGCCTGTGCTGCTTTATATCGTAGCCTTTTGCTCTGTACCGTCGTAAAGTATCGCACAGATAACATATTTGCGTCGATCAAGAAGTCGATCGGTGGGCTAGGGGAAGCTACACTGTGCTGGCAGCTATCTCCAGATACTCCCTGGCCGCCTCGCACAGTGTCCGCACGCTGCGGCGCAGATAATCCGGCTCGTGGAACGCAAACGTGAGGCGCAGAAAGTGGCGCGCCTCCTTCGCGAAAGAGAACCGTACGCCGGGAATGGCGGAAACGCGATACTTCTCCAAACAGTACCGATTAAACTCGGCACAGTCGATGTGCGATGGGAAGCGGATCCACACGAAGTACCCGCCGTTCGGTTTGCGGAAGCTGCAGCCGGCGGGAAGGTGCGCCTGTAGCGTTTCCGCCATCGCGTCCAGCCGTGCGGCGTAGTTGGTGCGGTAGTGGTCCAGCTGTCGCCGTGCCAAGCCCATCTGGATGAGGGTGGCCACTACACCGCCGGTGTAGTTGTTGGCCGCACCTCCACTCATGAGCACTCCACTGGGGGGGGTGGGAAAAAAAGGAATTTGCATGCATTAAAATCATTCTCCTCAGATCCCAAAGCCCTTTTTGTAGGCGACGAACCGCAACACGGCCCCTCCTACCTGTTGCGGAATGCTTCGACACAGCGCGGAGGACACTCCAT]




>consensus_4954#0
TTTTTTTTTTTTTTTTTTTTTCTTTCTGCCACCGATATGTGTCTTACACGGCGGGGGTCG
TTTTTATTTATTTATTTTTTTTACAGATCTATAAATAGTATTTGCCTGTGCTGCTTTATA
TCGTACCTTTTGCTCTGTACCGTCGTAAAGTATCGCACAGATAACAGATTTGCGTCGATC
AAGAAGTCGATCGGTGGGCTAGGGGAAGCTACACTGTGCTGGCAGCTATCTCCAGATACT
CCCTGGCCGCCTCGCACAGTGTCCGCACGCTGCGGCGCAGATAATCCGGCTCGTGGAACG
CAAACGTGAGGCGCAGAAAGTGGCGCGCCTCCTTCGCGAAAGAGAACCGTACGCCGGGAA
TGGCGGAAACGCGATACTTCTCCAAACAGTACCGATTAAACTCGGCACAGTCGATGTGCG
ATGGGAAGCGGATCCACACGAAGTACCCGCCGTTCGGTTTGCGGAAGCTGCAGCCGGCGG
GAAGGTGCGCCTGTAGCGTTTCCGCCATCGCGTCCAGCCGTGCGGCGTAGTTGGTGCGGT
AGTGGTCCAGCTGTCGCCGTGCCAAGCCCATCTGGATGAGGGTGGCCACTACACCGCCGG
TGTAGTTGTTGGCCGCACCTCCACTCATGAGCACTCCACTGGGGGGGGTGGGAAAAAAAG
GAATTTGCATGCATTAAAATCATTCTCCTCAGATCCCAAAGCCCTTTTTGTAGGCGACGA
ACCGCAACACGGCCCCTCCTACCTGTTGCGGAATGCTTCGACACAGCGCGGAGGACACTC
CAT

consensusID : consensus_4954#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 2
consensus length = 559
fasta sequence

                              [GAACGCAAACGTGAGGCGCAGAAAGTGGCGCGCCTCCTTCGCGAAAGAGAACCGTACGCCGGGAATGGCGGAAACGCGATACTTCTCCAAACAGTACCGATTAAACTCGGCACAGTCGATGTGCGATGGGAAGCGGATCCACACGAAGTACCCGCCGTTCGGTTTGCGGAAGCTGCAGCCGGCGGGAAGGTGCGCCTGTAGCGTTTCCGCCATCGCGTCCAGCCGTGCGGCGTAGTTGGTGCGGTAGTGGTCCAGCTGTCGCCGTGCCAAGCCCATCTGGATGAGGGTGGCCACTACACCGCCGGTGTAGTTGTTGGCCGCACCTCCACTCATGAGCACTCCACTGTTGCGGAATGCTTCGACACAGCGCGGAGGACACTCCATCCAGCCGAGCCGTATGCCGGGCGACAGGATCTTGGAGAAGGATCCGTTCGAGATCACGTTGCCGCGCAATCCCTCCACCCGGCCCAGGTCGGCGATGTCGCGCGCGAACAGGCGCTTTGGCGGTGGCGCGTCCGGATCAGCGTAGTGCAATAAATTGTACACGTCGTCACACGCA]

[-] EMBL BX611865             [GAACGCAAACGTGAGGCGCAGAAAGTGGCGCGCCTCCTTCGCGAAAGAGAACCGTACGCCGGGAATGGCGGAAACGCGATACTTCTCCAAACAGTACCGATTAAACTCGGCACAGTCGATGTGCGATGGGAAGCGGATCCACACGAAGTACCCGCCGTTCGGTTTGCGGAAGCTGCAGCCGGCGGGAAGGTGCGCCTGTAGCGTTTCCGCCATCGCGTCCAGCCGTGCGGCGTAGTTGGTGCGGTAGTGGTCCAGCTGTCGCCGTGCCAAGCCCATCTGGATGAGGGTGGCCACTACACCGCCGGTGTAGTTGTTGGCCGCACCTCCACTCATGAGCACTCCACTGTTGCGGAATGCTTCGACACAGCGCGGAGGACACTCCATCCAGCCGAGCCGTATGCCGGGCGACAGGATCTTGGAGAAGGATCCGTTCGAGATCACGTTGCCGCGCAATCCCTCCACCCGGCCCAGGTCGGCGATGTCGCGCGCGAACAGGCGCTTTGGCGGTGGCGCGTCCGGATCAGCGTAGTGCAATAAATTGTACACGTCGTCACACGCA]
[-] EMBL BX605336             [              GGCGCAGAAAGTGGCGCGCCTCCTTCGCGAAAGAGAACCGTACGCCGGGAATGGCGGAAACGCGATACTTCTCCAAACCGTACCGATTAAACTCGGCACCGTCGATGTGCGATGGGAAGCGGATCCACCCGAAGTACCCGCCGTTCGGTTTGCGGAAGCTGCAGCCGGCGGGAAGGTGCGCCTGTAGCGTTTCCGCCATCGCGTCCAGCCGTGCGGCGTAGTTGGTGCGGTAGTGGTCCAGC                                                                                                                                                                                                                                                                                                               ]




>consensus_4954#1
GAACGCAAACGTGAGGCGCAGAAAGTGGCGCGCCTCCTTCGCGAAAGAGAACCGTACGCC
GGGAATGGCGGAAACGCGATACTTCTCCAAACAGTACCGATTAAACTCGGCACAGTCGAT
GTGCGATGGGAAGCGGATCCACACGAAGTACCCGCCGTTCGGTTTGCGGAAGCTGCAGCC
GGCGGGAAGGTGCGCCTGTAGCGTTTCCGCCATCGCGTCCAGCCGTGCGGCGTAGTTGGT
GCGGTAGTGGTCCAGCTGTCGCCGTGCCAAGCCCATCTGGATGAGGGTGGCCACTACACC
GCCGGTGTAGTTGTTGGCCGCACCTCCACTCATGAGCACTCCACTGTTGCGGAATGCTTC
GACACAGCGCGGAGGACACTCCATCCAGCCGAGCCGTATGCCGGGCGACAGGATCTTGGA
GAAGGATCCGTTCGAGATCACGTTGCCGCGCAATCCCTCCACCCGGCCCAGGTCGGCGAT
GTCGCGCGCGAACAGGCGCTTTGGCGGTGGCGCGTCCGGATCAGCGTAGTGCAATAAATT
GTACACGTCGTCACACGCA

consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_4954#0      TTTTTTTTTTTTTTTTTTTTTCTTTCTGCCACCGATATGTGTCTTACACGGCGGGGGTCG 60
consensus_4954#1      ------------------------------------------------------------
                                                                                  

consensus_4954#0      TTTTTATTTATTTATTTTTTTTACAGATCTATAAATAGTATTTGCCTGTGCTGCTTTATA 120
consensus_4954#1      ------------------------------------------------------------
                                                                                  

consensus_4954#0      TCGTACCTTTTGCTCTGTACCGTCGTAAAGTATCGCACAGATAACAGATTTGCGTCGATC 180
consensus_4954#1      ------------------------------------------------------------
                                                                                  

consensus_4954#0      AAGAAGTCGATCGGTGGGCTAGGGGAAGCTACACTGTGCTGGCAGCTATCTCCAGATACT 240
consensus_4954#1      ------------------------------------------------------------
                                                                                  

consensus_4954#0      CCCTGGCCGCCTCGCACAGTGTCCGCACGCTGCGGCGCAGATAATCCGGCTCGTGGAACG 300
consensus_4954#1      -------------------------------------------------------GAACG 5
                                                                             *****

consensus_4954#0      CAAACGTGAGGCGCAGAAAGTGGCGCGCCTCCTTCGCGAAAGAGAACCGTACGCCGGGAA 360
consensus_4954#1      CAAACGTGAGGCGCAGAAAGTGGCGCGCCTCCTTCGCGAAAGAGAACCGTACGCCGGGAA 65
                      ************************************************************

consensus_4954#0      TGGCGGAAACGCGATACTTCTCCAAACAGTACCGATTAAACTCGGCACAGTCGATGTGCG 420
consensus_4954#1      TGGCGGAAACGCGATACTTCTCCAAACAGTACCGATTAAACTCGGCACAGTCGATGTGCG 125
                      ************************************************************

consensus_4954#0      ATGGGAAGCGGATCCACACGAAGTACCCGCCGTTCGGTTTGCGGAAGCTGCAGCCGGCGG 480
consensus_4954#1      ATGGGAAGCGGATCCACACGAAGTACCCGCCGTTCGGTTTGCGGAAGCTGCAGCCGGCGG 185
                      ************************************************************

consensus_4954#0      GAAGGTGCGCCTGTAGCGTTTCCGCCATCGCGTCCAGCCGTGCGGCGTAGTTGGTGCGGT 540
consensus_4954#1      GAAGGTGCGCCTGTAGCGTTTCCGCCATCGCGTCCAGCCGTGCGGCGTAGTTGGTGCGGT 245
                      ************************************************************

consensus_4954#0      AGTGGTCCAGCTGTCGCCGTGCCAAGCCCATCTGGATGAGGGTGGCCACTACACCGCCGG 600
consensus_4954#1      AGTGGTCCAGCTGTCGCCGTGCCAAGCCCATCTGGATGAGGGTGGCCACTACACCGCCGG 305
                      ************************************************************

consensus_4954#0      TGTAGTTGTTGGCCGCACCTCCACTCATGAGCACTCCACTG----GGGGGGGTGGGAAAA 656
consensus_4954#1      TGTAGTTGTTGGCCGCACCTCCACTCATGAGCACTCCACTGTTGCGGAATGCTTCGACAC 365
                      *****************************************    **   * *  ** * 

consensus_4954#0      AA-----AGGAATTTGCATGCATTAAAATCATTCTCC------TCAGATCCCAAAGCCCT 705
consensus_4954#1      AGCGCGGAGGACACTCCATCCAGCCGAGCCGTATGCCGGGCGACAGGATCTTGGAGAAGG 425
                      *      ****   * *** **    *  * *   **         ****    **    

consensus_4954#0      TTTTGTAGGCGACGA-ACCGCAACACGGCCCCTCCTACCTGTTGCGGAATGCTTCGACAC 764
consensus_4954#1      ATCCGTTCGAGATCACGTTGCCGCGCAATCCCTCCACCCGGCCCAGGTCGGCGATGTCGC 485
                       *  **  * **  *    **  * *   ******  ** *    **   **   * * *

consensus_4954#0      AGCGCGGA-GGACACTCCAT---------------------------------------- 783
consensus_4954#1      -GCGCGAACAGGCGCTTTGGCGGTGGCGCGTCCGGATCAGCGTAGTGCAATAAATTGTAC 544
                       ***** *  * * **                                            

consensus_4954#0      ---------------
consensus_4954#1      ACGTCGTCACACGCA 559