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These datas are free for academic use only, please contact me for any other use. Anopheles gambiae see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_4974#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 2 consensus length = 949 fasta sequence
[TACAATCACACACGCTTTTTCTTTCACACCGACACTCTGGCTCGTCGTTCCTTCAGCGCAGTACCGCTAGTTTCATCCCGTCTGTGTGCGTGTGTGTTTGCAAGGAGCTGTAGTTAAGATTTCATCCGTTTGCTTGTATAGATGCTGCAAACGTAAGGCCATTTTAGTTCACGTGCTATTTTTAAAACTATATATATACACACCGGTCGAAGGGATATATACATATAGAGATATAGAGTGGTAGGATGTATTAGCAAACCATAATTATGTGCCAATCCAGTTGTGTTAGATTTCTTTACTATTTCTTGGTTTTTATTAGATTTCATGTACATGTGTGTGCGTGCGTGTGTGTATGAGCCCCATTATACAATATGCCATAAGAAGGATGAGACAACAATTGTACAAAGTGGTAATAGTAGTAAATAGTACCGTTCATGTGGCCATTACGTAGGTTTTGTTTTTCTGTTTAATTTCTACACTCGATCGACACCGCGTTCTGCCGTGGTTTAGTACCTTTTTTGTAGCCAAGTGTTTTTTTAGATCGCATTACTTATACTTTACTGCAAACATTAAGGCTAGCAGGAGCGATAGCAAACTGGGCTAAGAAATTGCTCACACACACATCCGTGCACACATGCAACTTACATACCGGATGGTGGAATATTTATTGTATAGAATAGAGAGCCGAAAATAAGGAGAGGGGAGGAGAGAAAAGGGCCAGAGAGGAAAGGTGACAAAATGAAACTAGCATACCGATCAAAGCAATCGGTCCTCCCTTTACTTGTGTGTGTTCGTGTCGTTTGTGGTCGATCGCGGAGCAAAAACGTAGGAATGGCACCACACGCGTGAATCAGCGAAACCCATCATTACCGAGACGTGCAAGGCCGTGAGCGTGCGTGTGTGTGTATTTCTGACGTGCATAATGAAATAAACGTATTGTTTTTTGATA]
[+] EMBL CNS08J77 [TACAATCACACACGCTTTTTCTTTCACACCGACACTCTGGCTCGTCGTTCCTTCAGCGCAGTACCGCTAGTTTCATCCCGTCTGTGTGCGTGTGTGTTTGCAAGGAGCTGTAGTTAAGATTTCATCCGTTTGCTTGTATAGATGCTGCAAACGTAAGGCCATTTTAGTTCACGTGCTATTTTTAAAACTATATATATACACACCGGTCGAAGGGATATATACATATAGAGATATAGAGTGGTAGGATGTATTAGCAAACCATAATTATGTGCCAATCCAGTTGTGTTAGATTTCTTTACTATTTCTTGGTTTTTATTAGATTTCATGTACATGTGTGTGCGTGCGTGTGTGTATGAGCCCCATTATACAATATGCCATAAGAAGGATGAGACAACAATTGTACAAAGTGGTAATAGTAGTAAATAGTACCGTTCATGTGGCCATTACGTAGGTTTTGTTTTTCTGTTTAATTTCTACACTCGATCGACACCGCGTTCTGCCGTGGTTTAGTACCTTTTTTGTAGCCAAGTGTTTTTTTAGATCGCATTACTTATACTTTACTGCAAACATTAAGGCTAGCAGGAGCGATAGCAAACTGGGCTAAGAAATTGCTCACACACACATCCGTGCACACATGCAACTTACATACCGGATGGTGGAATATTTATTGTATAGAATAGAGAGCCGAAAATAAGGAGAGGGGAGGAGAGAAAAGGGCCAGAGAGGAAAGGTGACAAAATGAAACTAGCATACCGATCAAAGCAATCGGTCCTCCCTTTACTTGTGTGTGTTCG ]
[-] EMBL CNS08J78 [ AAACCATAATTATGTGCCAATCCAGTTGTGTTAGATTTCTTTACTATTTCTTGGTTTTTATTAGATTTCATGTACATGTGTGTGCGTGCGTGTGTGTATGAGCCCCATTATACAATATGCCATAAGAAGGATGAGACAACAATTGTACAAAGTGGTAATAGTAGTAAATAGTACCGTTCATGTGGCCATTACGTAGGTTTTGTTTTTCTGTTTAATTTCTAAACTCGATCGACACCG GTTCTGCCGTGGTTTAGTACCTTTTTTGTAGCCAAGTGTTTTTTTAGATCGCATTACTTATACTTTACTGCAAACATTAAGGCTAGCAGGAGCGATAGCAAACTGGGCTAAGAAATTGTTTAAAAAAACATCCGTGAAAACATGCAACTTACATACCGGATGGTGGAATATTTATTGTATAGAATAGAGAGCCGAAAATAAGGAGAGGGGAGGAGAGAAAAGGGCCAGAGAGGAAAGGTGACAAAATGAAACTAGCATACCGATCAAAGCAATCGGTCCTCCCTTTACTTGTGTGTGTGCGTGTCGTTTGTGGTCGATCGCGGAGCAAAAACGTAGGAATGGCACCACACGCGTGAATCAGCGAAACCCATCATTACCGAGACGTGCAAGGCCGTGAGCGTGCGTGTGTGTGTATTTCTGACGTGCATAATGAAATAAACGTATTGTTTTTTGATA]
consensusID : consensus_4974#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 617 fasta sequence
[ATGAGACAACAATTGTACAAAGTGGTAATAGTAGTAAATAGTACCGTTCATGTGGCCATTACGTAGGTTTTGTTTTTCTGTTTAATTTCTACACTCGATCGACACCGGTTCTGCCGTGGTTCAGTACCTTTTTTGTAGCCAAGTGTTTTTTTAGAGCGCAATACTTATACTTTACTGCAAACATTAAGGCTAGCAGGAGCGATAGCAAACTGGGCTAAGAAATTGCTCACACACACATACGTGCACACATACAACTTACATACCGGATGGTGGAATATTTATTGTATAGAATAGAGAGCCGAAAATAAGGAGAGGGAAGGAGAGAAAAGGGGAGAGCATGTGACAAAATGAAGCTAGCATACCGATCAAAGCAATCGGTCCTCCCTTTACTTGTGCGATGTACTTATTGGTTGAAAATTGGAACACAAATACACATCCATACACACACATCACTGAACCACTGAAACTAGCGTGGTAAATAGGCTGAGCGAATGGTGGGTGGATGGTAGGTTACGCACTCCAGTTTGTACGATACTTGTCTAGAATAAACTTCCCCCTCCCCGCTCTTTTCCGCTGATAAATATAAAACATTCAGACATGAAAGTGTGTGTGTGTGC]
[+] EMBL BX616337 [ATGAGACAACAATTGTACAAAGTGGTAATAGTAGTAAATAGTACCGTTCATGTGGCCATTACGTAGGTTTTGTTTTTCTGTTTAATTTCTACACTCGATCGACACCGGTTCTGCCGTGGTTCAGTACCTTTTTTGTAGCCAAGTGTTTTTTTAGAGCGCAATACTTATACTTTACTGCAAACATTAAGGCTAGCAGGAGCGATAGCAAACTGGGCTAAGAAATTGCTCACACACACATACGTGCACACATACAACTTACATACCGGATGGTGGAATATTTATTGTATAGAATAGAGAGCCGAAAATAAGGAGAGGGAAGGAGAGAAAAGGGGAGAGCATGTGACAAAATGAAGCTAGCATACCGATCAAAGCAATCGGTCCTCCCTTTACTTGTGCGATGTACTTATTGGTTGAAAATTGGAACACAAATACACATCCATACACACACATCACTGAACCACTGAAACTAGCGTGGTAAATAGGCTGAGCGAATGGTGGGTGGATGGTAGGTTACGCACTCCAGTTTGTACGATACTTGTCTAGAATAAACTTCCCCCTCCCCGCTCTTTTCCGCTGATAAATATAAAACATTCAGACATGAAAGTGTGTGTGTGTGC]
consensusID : consensus_4974#2 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 416 fasta sequence
[CAAGAATCCCGCNACGAGTGTACATANGGCATCTTTAGTTCCACNTCGCCTACTTCTTTAAAACTATATATATACATACACCGGTCGAAAGGATATATACATATAGAGATATAAAGTGGGTAGATGTATTAGCAAACCATAATTATGTGCCAATCCANGTTGTGTTAAGATTTCTTTACTAATTTCTTGGGTTTTTATTNAGATTTCACTGTACACTGGTGTGTGCGTGCGTGTGTTGTATGAGCCCCGGTGTATACACATATGCCATAAGGAAGGATGAGACAACAATTGTACCAAAGTGGTAATAGTAGTAAATAGTACCGTTCATGTGGGCATTACGTAGTTTTGTANTATTCTGTTTTAATTTCTATCAGCTCGATCGACACCGGGTTCTGCCGTGGTTCAGGTANCGTTTA]
[+] EMBL BX466467 [CAAGAATCCCGCNACGAGTGTACATANGGCATCTTTAGTTCCACNTCGCCTACTTCTTTAAAACTATATATATACATACACCGGTCGAAAGGATATATACATATAGAGATATAAAGTGGGTAGATGTATTAGCAAACCATAATTATGTGCCAATCCANGTTGTGTTAAGATTTCTTTACTAATTTCTTGGGTTTTTATTNAGATTTCACTGTACACTGGTGTGTGCGTGCGTGTGTTGTATGAGCCCCGGTGTATACACATATGCCATAAGGAAGGATGAGACAACAATTGTACCAAAGTGGTAATAGTAGTAAATAGTACCGTTCATGTGGGCATTACGTAGTTTTGTANTATTCTGTTTTAATTTCTATCAGCTCGATCGACACCGGGTTCTGCCGTGGTTCAGGTANCGTTTA]
consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment
consensus_4974#0 -------------------------TACAATCACACACGCTTTTTCTTTCACACCGACAC 35
consensus_4974#2 ------------------------------------------------------------
consensus_4974#1 ATGAGACAACAATTGTACAAAGTGGTAATAGTAGTAAATAGTACCGTTCATGTGGCCATT 60
consensus_4974#0 TCTGGCTCGTCGTTCCTTCAGCGCAGTACCGCTAGTTTCATCCCGTCTGTGTGCGTGTGT 95
consensus_4974#2 ------------------------------------------------------------
consensus_4974#1 ACGTAGGTTTTGTTTTTCTGTTTAATTTCTACACTCGATCGACACCGGTTCTGCCGTGGT 120
consensus_4974#0 GTTTGCAAGGAGCTGTAGTTAAGATTTCATCC----GTTTGCTTGTATAGAT-GCTGCA- 149
consensus_4974#2 -------------------CAAGA----ATCC----CGCNACGAGTGTACAT-ANGGCA- 31
consensus_4974#1 TCAGTACCTTTTTTGTAGCCAAGTGTTTTTTTAGAGCGCAATACTTATACTTTACTGCAA 180
*** * * ** * ***
consensus_4974#0 -AACGTAAGGCCATTTTAGT--TCACGTGCTA-TTTTTAAAACTATATATATACA--CAC 203
consensus_4974#2 -TCTTTAG-----TTCCACN--TCGCCTACT--TCTTTAAAACTATATATATACATACAC 81
consensus_4974#1 ACATTAAGGCTAGCAGGAGCGATAGCAAACTGGGCTAAGAAATTGCTCACACACACATAC 240
* * * * ** * *** * * * *** **
consensus_4974#0 CGGTCGAAGGGATATATACATATAGAGATATAGAGTG---GTAGGATGTATTAGCAAACC 260
consensus_4974#2 CGGTCGAAAGGATATATACATATAGAGATATAAAGTG---GGTAGATGTATTAGCAAACC 138
consensus_4974#1 GTGCACACATACAACTTACATACCGGATGGTGGAATATTTATTGTATAGAATAGAGAGCC 300
* * * ****** * * * * ** * *** * **
consensus_4974#0 ATAATTATGT---GCCAATCCAG-TTGTGTTA-GATTTCTTTACTA-TTT---CTTGG-T 310
consensus_4974#2 ATAATTATGT---GCCAATCCANGTTGTGTTAAGATTTCTTTACTAATTT---CTTGGGT 192
consensus_4974#1 GAAAATAAGGAGAGGGAAGGAGAGAAAAGGGGAGAGCATGTGACAAAATGAAGCTAGCAT 360
** ** * * ** * ** * ** * * ** * *
consensus_4974#0 TTTTATTA-GAT--TTCA-TGTACAT--GTGTGTGCG-TGCGTGTGT-GTATGAGCCCCA 362
consensus_4974#2 TTTTATTNAGAT--TTCACTGTACACTGGTGTGTGCG-TGCGTGTGTTGTATGAGCCCCG 249
consensus_4974#1 ACCGATCAAAGCAATCGGTCCTCCCTTTACTTGTGCGATGTACTTATTGGTTGAAAATTG 420
** * * * ****** ** * * * ***
consensus_4974#0 TTATACA---ATATG-CCATAAG-AAGGATGAGACAACAATTGTA-C-AAAGTGGTAATA 415
consensus_4974#2 GTGTATACACATATG-CCATAAGGAAGGATGAGACAACAATTGTA-CCAAAGTGGTAATA 307
consensus_4974#1 GAACACAAATACACATCCATACACACACATCACTGAACCACTGAAACTAGCGTGGTAAAT 480
* * * * ***** * ** * *** * ** * * * *******
consensus_4974#0 GTAGTAAAT-AGTACCGTTCATGTGG-CCATTACGTAGG----TTT-TGTTTTTCTGTTT 468
consensus_4974#2 GTAGTAAAT-AGTACCGTTCATGTGG-GCATTACGTAGT----TTTGTANTATTCTGTTT 361
consensus_4974#1 AGGCTGAGCGAATGGTGGGTGGATGGTAGGTTACGCACTCCAGTTTGTACGATACTTGTC 540
* * * * * *** ***** * *** * * ** *
consensus_4974#0 -AATTTCTAC--ACTCGATCGACACCGCGTTCTGCCGTGGTTTAG-TACCTTTTTTGTAG 524
consensus_4974#2 TAATTTCTATCAGCTCGATCGACACCGGGTTCTGCCGTGGTTCAGGTANCGTTTA----- 416
consensus_4974#1 TAGAATAAACT-TCCCCCTCCCCGCTCTTTTCCGCTGATAAATATAAAACATTCAGACAT 599
* * * * * ** * * *** ** * * * * **
consensus_4974#0 CCAAGTGTTTTTTTAGATCGCATTACTTATACTTTACTGCAAACATTAAGGCTAGCAGGA 584
consensus_4974#2 ------------------------------------------------------------
consensus_4974#1 GAAAGTGTGTGTGTGTGC------------------------------------------ 617
consensus_4974#0 GCGATAGCAAACTGGGCTAAGAAATTGCTCACACACACATCCGTGCACACATGCAACTTA 644
consensus_4974#2 ------------------------------------------------------------
consensus_4974#1 ------------------------------------------------------------
consensus_4974#0 CATACCGGATGGTGGAATATTTATTGTATAGAATAGAGAGCCGAAAATAAGGAGAGGGGA 704
consensus_4974#2 ------------------------------------------------------------
consensus_4974#1 ------------------------------------------------------------
consensus_4974#0 GGAGAGAAAAGGGCCAGAGAGGAAAGGTGACAAAATGAAACTAGCATACCGATCAAAGCA 764
consensus_4974#2 ------------------------------------------------------------
consensus_4974#1 ------------------------------------------------------------
consensus_4974#0 ATCGGTCCTCCCTTTACTTGTGTGTGTTCGTGTCGTTTGTGGTCGATCGCGGAGCAAAAA 824
consensus_4974#2 ------------------------------------------------------------
consensus_4974#1 ------------------------------------------------------------
consensus_4974#0 CGTAGGAATGGCACCACACGCGTGAATCAGCGAAACCCATCATTACCGAGACGTGCAAGG 884
consensus_4974#2 ------------------------------------------------------------
consensus_4974#1 ------------------------------------------------------------
consensus_4974#0 CCGTGAGCGTGCGTGTGTGTGTATTTCTGACGTGCATAATGAAATAAACGTATTGTTTTT 944
consensus_4974#2 ------------------------------------------------------------
consensus_4974#1 ------------------------------------------------------------
consensus_4974#0 TGATA 949
consensus_4974#2 -----
consensus_4974#1 -----
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| Copyright Wed Dec 3 12:11:56 CET 2003 Hubert Wassner (hubert.wassner@noos.fr) | ||||