These datas are free for academic use only, please contact me for any other use. Anopheles gambiae see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_4977#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 3 consensus length = 1071 fasta sequence [ACCTGCACCTTGCCCGCATTTTCGCTTCTAGCCATTGTGTTGTTCTATTGTTTTGCTTGCCGCACACCAACGCAACCACTAAAGCTTCAAACGTTCGATTCCGATGGCCGACTTTGATTTACCGCGAATGCGTTCGCTCGCACCGGAGCAGGACCCCGCCGTGCCGATTGCGTACGAGCACCGGCGATCACCCCCCATGGTCACCCACCACCAGGAAATGGATCTAATCGAAGTGCTCTGGAAGCAGGATGTCGATCTTGGCTTTACGCTCGCGAATGCGGGCCTTTCCAACGCACCGGAAGGGTCCAGCTCAACGTCAGCGGACACAGCATCTGCCACCGGCATAAAGTGCGACACCGAGGACGATTTGGAAAAGTTGAAGGTTTTGCTGGAGATAAAAAATGATAAGAATGCCGACTACGAAAAGAACCCCAATGCAGCGGACGAGAGCAGTCTGGTCGATCCTTGGGCANGACTGTCCTACACAATCGATACGGAAACAGGCGAGTACGTGCTGAACAGCTCGGACATAGATAACAGCTTGCCACCACCGTTGGCGGATCTGTTCCTGGAGGAAGGCCTAACGCTACCGGACCTTGGCGAAACAGTGGTTGACACCATTGCCGAAATCAAGCCTGACGACAGTGAGAGCGATCTGTCCGGACCGCCAGTCCAGGAGGAGCAGGAAATTGCCGAGGTAAAGCGCATCGAACAGGAGCTGCAGCAGGTGTCGGTGGGCGAGATTTGTCTCGGTGGTGGCAGTCGTGCTTCCGGCACGTCGAGTGCCGATCAGAACAGCAACTGCGAAGATACCGGCGAGATCCTCGACACGGAAACCGATTCCGCAGCCGCAGCGAACACGACGTCGTCCGACGCCGAAGGTCTCGAGGCCGAGCCGGTGACCGATGATCTAAAGGATCTGCTCTGCGACATGATGATACAAACGTCGTCCCACTTTCAACACACGCGCCAGAACACGCAAGGCTACGGCCATGGCGCCATGGGCAGCTTCCGACAAACGGCGACCGGTGGCGCTGGTTACCATCACCATCACCATCATCACCACCACCA] [+] EMBL AGA282377 [ACCTGCACCTTGCCCGCATTTTCGCTTCTAGCCATTGTGTTGTTCTATTGTTTTGCTTGCCGCACACCAACGCAACCACTAAAGCTTCAAACGTTCGATTCCGATGGCCGACTTTGATTTACCGCGAATGCGTTCGCTCGCACCGGAGCAGGACCCCGCCGTGCCGATTGCGTACGAGCACCGGCGATCACCCCCCATGGTCACCCACCACCAGGAAATGGATCTAATCGAAGTGCTCTGGAAGCAGGATGTCGATCTTGGCTTTACGCTCGCGAATGCGGGCCTTTCCAACGCACCGGAAGGGTCCAGCTCAACGTCAGCGGACACAGCATCTGCCACCGGCATAAAGTGCGACACCGAGGACGATTTGGAAAAGTTGAAGGTTTTGCTGGAGATAAAAAATGATAAGAATGCCGACTACGAAAAGAACCCCAATGCAGCGGACGAGAGCAGTCTGGTCGATCCTTGGGCANGACTGTCCTACACAATCGATACG ] [+] EMBL AGA282403 [ AAAAGAACCCCAATGCAGCGGACGAGAGCAGTCTGGTCGATCCTTGGGCAGGACTGTCCTACACAATCGATACGGAAACAGGCGAGTACGTGCTGAACAGCTCGGACATAGATAACAGCTTGCCACCACCGTTGGCGGATCTGTTCCTGGAGGAAGGCCTAACGCTACCGGACCTTGGCGAAACAGTGGTTGACACCATTGCCGAAATCAAGCCTGACGACAGTGAGAGCGATCTGTCCGGACCGCCAGTCCAGGAGGAGCAGGAAATTGCCGAGGTAAAGCGCATCGAACAGGAGCTGCAGCAGGTGTCGGTGGGCGAGATTTGTCTCGGTGGTGGCAGTCGTGCTTCCGGCACGTCGAGTGCCGATCAGAACAGCAACTGCGAAGATACCGGCGAGATCCTCGACACGGAAACCGATTCCGCAGCCGCAGCGA ] [+] EMBL AGA282853 [ ACAGCAACTGCGAAGATACCGGCGAGATCCTCGACACGGAAACCGATTCCGCAGCCGCAGCGAACACGACGTCGTCCGACGCCGAAGGTCTCGAGGCCGAGCCGGTGACCGATGATCTAAAGGATCTGCTCTGCGACATGATGATACAAACGTCGTCCCACTTTCAACACACGCGCCAGAACACGCAAGGCTACGGCCATGGCGCCATGGGCAGCTTCCGACAAACGGCGACCGGTGGCGCTGGTTACCATCACCATCACCATCATCACCACCACCA] consensusID : consensus_4977#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 774 fasta sequence [TCGTGTGTCCGAAAAACCGACCGCAACCTGCACCTTGCCCGCATTTTCGCTTCTAGCCATTGTGTTGTTCTATTGTTTTGCTTGCCGCACACCAACGCAACCACTAAAGCTTCAAACGTTCGATCCCGATGGCCGACTTTGATTTACCGCGAATGCGTTCGCTCGCACCGGAGCAGGACCCCGCCGTGCCGATTGCGTACGAGCACCGGCGATCACCCCCCATGGTCACCCACCACCAGAAATGCACGCAATTTGTTTTCATGGAATCGGCAGCCTAGAATAAAATGTCTCAATGTGCTCGTTTGCATCACCTGTTGCCTTTCGTCCGCTACCGGTACGTCACGTTTGACAGTAAATGACCGGTTTTGTTTACCGATTGAAACGTTCGCTCTTGCCTGTTAGCGATTTTAGACAATTGTTTTCGCATTTCTACTAATTCTGAGCAATTTTCTGAATATTACTGAACCACAAATAGTGAAAATAATAAGCAAATCCATATGATTTGCTGGCACGACCACTGTCGGTTAGCAACTGTCATATCAGCGATTCTTTTTTTCAAACACGCTCCAGCCAGTATTTGTGCAACCCGTTGCCACACAGCCCAAAAACCGCAAAAGCTGATGCAATACACAGCACCCGTTCTAGAACAATCGCGTCTAGTTTGTTTGTTTGCGGNTTATGCCAATGCCTCTGCCGTTTCATAAAAGTTGCGTATATTGCGTGNCCATCCCTTACAACAGTATTAGCAGCGCAGTTTGGTACGCGCNAATGCTT] [+] EMBL BX621939 [TCGTGTGTCCGAAAAACCGACCGCAACCTGCACCTTGCCCGCATTTTCGCTTCTAGCCATTGTGTTGTTCTATTGTTTTGCTTGCCGCACACCAACGCAACCACTAAAGCTTCAAACGTTCGATCCCGATGGCCGACTTTGATTTACCGCGAATGCGTTCGCTCGCACCGGAGCAGGACCCCGCCGTGCCGATTGCGTACGAGCACCGGCGATCACCCCCCATGGTCACCCACCACCAGAAATGCACGCAATTTGTTTTCATGGAATCGGCAGCCTAGAATAAAATGTCTCAATGTGCTCGTTTGCATCACCTGTTGCCTTTCGTCCGCTACCGGTACGTCACGTTTGACAGTAAATGACCGGTTTTGTTTACCGATTGAAACGTTCGCTCTTGCCTGTTAGCGATTTTAGACAATTGTTTTCGCATTTCTACTAATTCTGAGCAATTTTCTGAATATTACTGAACCACAAATAGTGAAAATAATAAGCAAATCCATATGATTTGCTGGCACGACCACTGTCGGTTAGCAACTGTCATATCAGCGATTCTTTTTTTCAAACACGCTCCAGCCAGTATTTGTGCAACCCGTTGCCACACAGCCCAAAAACCGCAAAAGCTGATGCAATACACAGCACCCGTTCTAGAACAATCGCGTCTAGTTTGTTTGTTTGCGGNTTATGCCAATGCCTCTGCCGTTTCATAAAAGTTGCGTATATTGCGTGNCCATCCCTTACAACAGTATTAGCAGCGCAGTTTGGTACGCGCNAATGCTT] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_4977#0 -------------------------ACCTGCACCTTGCCCGCATTTTCGCTTCTAGCCAT 35 consensus_4977#1 TCGTGTGTCCGAAAAACCGACCGCAACCTGCACCTTGCCCGCATTTTCGCTTCTAGCCAT 60 *********************************** consensus_4977#0 TGTGTTGTTCTATTGTTTTGCTTGCCGCACACCAACGCAACCACTAAAGCTTCAAACGTT 95 consensus_4977#1 TGTGTTGTTCTATTGTTTTGCTTGCCGCACACCAACGCAACCACTAAAGCTTCAAACGTT 120 ************************************************************ consensus_4977#0 CGATTCCGATGGCCGACTTTGATTTACCGCGAATGCGTTCGCTCGCACCGGAGCAGGACC 155 consensus_4977#1 CGATCCCGATGGCCGACTTTGATTTACCGCGAATGCGTTCGCTCGCACCGGAGCAGGACC 180 **** ******************************************************* consensus_4977#0 CCGCCGTGCCGATTGCGTACGAGCACCGGCGATCACCCCCCATGGTCACCCACCACCAGG 215 consensus_4977#1 CCGCCGTGCCGATTGCGTACGAGCACCGGCGATCACCCCCCATGGTCACCCACCACCAG- 239 *********************************************************** consensus_4977#0 AAATGGATCTAATCGAAGTGCTCTGGAAGCAGGATGTCGATCTTGGCTTTACGCTCGCGA 275 consensus_4977#1 AAATGCACGCAATTT--GTTTTCATGGAATCGG----CAGCCTAGAATAAAATGTCTC-A 292 ***** * *** ** ** * * ** * ** * * * ** * * consensus_4977#0 ATGCGGGCCTTTCCAACGCACCGGAAGGGTCCAGCTCAACGTCAGCGGACACAGCATCTG 335 consensus_4977#1 ATGTGCTCGTTTGCAT--CACCTGTTGCCTTTCGTCCGCTACCGGT--ACGTCACGTTTG 348 *** * * *** ** **** * * * * * * * ** * * ** consensus_4977#0 CCACCGGCATAAAGTGCGACACCGAGGACGATTTGGAAAAGTTGAAGGTTTTGCTGGAGA 395 consensus_4977#1 ACAGTA----AATGACCGGTTTTGTTTACCGATTGAAACGTTCGC---TCTTGCC----- 396 ** ** * ** * ** *** ** * * * **** consensus_4977#0 TAAAAAATGATAAGAATGCCGACTACGAAAAGAACCCCAATGCAGCGGACGAGAGCAGTC 455 consensus_4977#1 -------TGTTAGCGATTTTAG--ACAATTGTTTTCGCATTTCTACTAAT--------TC 439 ** ** ** ** * * ** * * * * ** consensus_4977#0 TGGTCGATCCT-TGGGCANGACTGTCCTACACAATCGATACGGAAACAGGCGAGTACGTG 514 consensus_4977#1 TGAGCAATTTTCTGAATATTACTGAACCACA-AATAGTGAAAATAATAAGCAAATCCATA 498 ** * ** * ** * **** * *** *** * * ** * ** * * * * consensus_4977#0 CTGAACAGCTCGGAC-ATAGATAACAGCTTGCCACCACCGT--TGGCGGATCTGTTCCTG 571 consensus_4977#1 -TGATTTGCTGGCACGACCACTGTCGGTTAGCAACTGTCATATCAGCGATTCTTTTTTTC 557 *** *** * ** * * * * * ** ** * * *** *** ** * consensus_4977#0 GAGGAAGGCCTAACGCTACCGGACCTTGGCGAAACAGTGGTTGACACCATTGCCGAAATC 631 consensus_4977#1 AAACACGCTCCAGCC------AGTATTTGTGCAAC-----------CCGTTGCCACAC-- 598 * * * * * * ** * * *** ** ***** * consensus_4977#0 AAGCCTGACGACAGTGAGAGC-GAT-CTGTCCGGACCGCCAGTCCAGGAGGAGCAGGAAA 689 consensus_4977#1 -AGCCCAAAAACCGCAAAAGCTGATGCAATACACAGCACCCGTTCTAGAACAATCG---- 653 **** * ** * * *** *** * * * * * ** ** * ** * * consensus_4977#0 TTGCCGAGGTAAAGCGCATCGAACAGGAGCTGCAGCAGGTGTCGGTGGGCGAGATTTGTC 749 consensus_4977#1 -CGTCTAGTTTGTTTGTTTGCGGNTTATGCCAATGCCTCTGCCGTTTCATAAAAGTTGCG 712 * * ** * * * ** ** ** ** * * * *** consensus_4977#0 TCGGTGGTGGCAGTCGTGCTTCCGGCACGTCGAGTGCCGATCAGAACAGCAACTGCGAAG 809 consensus_4977#1 TATATTGCGTGNCCATCCCTTACAACAGTATTAGCAGCG--CAGTTTGGTACGCGCNAAT 770 * * * * *** * ** ** ** *** * * ** ** consensus_4977#0 ATACCGGCGAGATCCTCGACACGGAAACCGATTCCGCAGCCGCAGCGAACACGACGTCGT 869 consensus_4977#1 GCTT-------------------------------------------------------- 774 consensus_4977#0 CCGACGCCGAAGGTCTCGAGGCCGAGCCGGTGACCGATGATCTAAAGGATCTGCTCTGCG 929 consensus_4977#1 ------------------------------------------------------------ consensus_4977#0 ACATGATGATACAAACGTCGTCCCACTTTCAACACACGCGCCAGAACACGCAAGGCTACG 989 consensus_4977#1 ------------------------------------------------------------ consensus_4977#0 GCCATGGCGCCATGGGCAGCTTCCGACAAACGGCGACCGGTGGCGCTGGTTACCATCACC 1049 consensus_4977#1 ------------------------------------------------------------ consensus_4977#0 ATCACCATCATCACCACCACCA 1071 consensus_4977#1 ---------------------- |
Copyright Wed Dec 3 12:11:56 CET 2003 Hubert Wassner (hubert.wassner@noos.fr) | ||||