cluster # 4984

These datas are free for academic use only, please contact me for any other use.

Anopheles gambiae
cluster # 4984 cluster # 4984 Sequences # 4 consensus # 3

see consensus multiple alignment with clustalw

Direct access to contigs :

consensus_4984#0 length = 856 sequences # 2

consensus_4984#1 length = 369 sequences # 1
consensus_4984#2 length = 330 sequences # 1

consensusID : consensus_4984#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 2
consensus length = 856
fasta sequence

                              [CCGGGAAACGAATTGCTGGGCGAAGAATCGATAGCATAAATAGGTTCTGTACCGTAAAAAGTGTTGTAATCATAAGAACAGACAATTAAACCCTATTGTAAGGCGAAAAACATAAGGCACGAACTAATGGGAAACGATCAACATCATACAAAGAGCAGGAAAGCATCAAGGGAGTGGAAGTGACCGAACCAACGGACAGAAAGAACCGTTGACTGGCTGTTAAATGTTCATTTCAATCTGTATATACACAGTTACAACAAAATGCGTCGTGTGAGAGTATTTGCAATTAAAGAGATACGCAGCAGCAGTAACAGCAGCAGCCGCGGCAACAGTCCTGCGTTGGAGTTAAGAATGAGCGATAGAGAGAGACAGAGAGAGAGAGAGAGAAAAAGTAACAATGAACAACAATGATCACCGCTTTGTAGGGATTTAGTAAAGCTATCAAATATAACAAATTTGACAAAATTGTGGTCATGCTAAGAAAGGGGGAAAAAGGAAGCACACAATTTACGCTATAAAGACACACCAGAACACACGAATTCCCCCACACCGGCAAACAATTCTAAACAAAAATCCTAGCCTTCATTTTCCGGTCTTCTTGGCGTGACAACAGTGTGCAGGTTAAAACAAAAAGTTCAATAGGAAATTTCGTTTATGTAGTTGGAAAGTACATAAGAGTGTGCATAGTGAAAAGCGCTTTAATACACCGGTTCAAATGAAGCGGAGTAATAAAAAAAGAAGCAAAACACGAACGATAGCAAGTAAAAGCGAATGCAAGAAACTATCAAAATACACTCACGCAAACACACACAGAAACACGCAGAAAGAGAAGGTGAAAGGAGAAGTAGAGGTTAGA]

[+] EMBL BM591279             [CCGGGAAACGAATTGCTGGGCGAAGAATCGATAGCATAAATAGGTTCTGTACCGTAAAAAGTGTTGTAATCATAAGAACAGACAATTAAACCCTATTGTAAGGCGAAAAACATAAGGCACGAACTAATGGGAAACGATCAACATCATACAAAGAGCAGGAAAGCATCAAGGGAGTGGAAGTGACCGAACCAACGGACAGAAAGAACCGTTGACTGGCTGTTAAATGTTCATTTCAATCTGTATATACACAGTTACAACAAAATGCGTCGTGTGAGAGTATTTGCAATTAAAGAGATACGCAGCAGCAGTAACAGCAGCAGCCGCGGCAACAGTCCTGCGTTGGAGTTAAGAATGAGCGATAGAGAGAGACAGAGAGAGAGAGAGAGAAAAAGTAACAATGAACAACAATGATCACCGCTTTGTAGGGATTTAGTAAAGCTATCAAATATAACAAATTTGACAAAATTGTGGTCATGCTAAGAAAGGGGGAAAAAGGAAGCACACAATTTACGCTATAAAGACACACCAGAACACACGAATTCCCCCACACCGGCAAACAATTCTAAACAAAAATCCTAGCCTTCATTTTCCGGTCTTCTTGGCGTGACAACAGTGTGCAGGTTAAAACAAAAAGTTCAATAGGAAATTTCGTTTATGTAGTTGGAAAGTACATAAGAGTGTGC                                                                                                                                                                             ]
[+] EMBL BM620395             [                                                                                                                                                                                                                       ccgGTTAAATGTTCATTTCAATCTGTATATACACAGTTACAACAAAATGCGTCGTGTGAGAGTATTTGCAATTAAAGAGATACGCAGCAGCAGTAACAGCAGCAGCCGCGGCAACAGTCCTGCGTTGGAGTTAAGAATGAGCGATAGAGAGAGACAGAGAGAGAGAGAGAGAAAAAGTAACAATGAACAACAATGATCACCGCTTTGTAGGGATTTAGTAAAGCTATCAAATATAACAAATTTGACAAAATTGTGGTCATGCTAAGAAAGGGGGAAAAAGGAAGCACACAATTTACGCTATAAAGACACACCAGAACACACGAATTCCCCCACACCGGCAAACAATTCTAAACAAAAATCCTAGCCTTCATTTTCCGGTCTTCTTGGCGTGACAACAGTGTGCAGGTTAAAACAAAAAGTTCAATAGGAAATTTCGTTTATGTAGTTGGAAAGTACATAAGAGTGTGCATAGTGAAAAGCGCTTTAATACACCGGTTCAAATGAAGCGGAGTAATAAAAAAAGAAGCAAAACACGAACGATAGCAAGTAAAAGCGAATGCAAGAAACTATCAAAATACACTCACGCAAACACACACAGAAACACGCAGAAAGAGAAGGTGAAAGGAGAAGTAGAGGTTAGA]




>consensus_4984#0
CCGGGAAACGAATTGCTGGGCGAAGAATCGATAGCATAAATAGGTTCTGTACCGTAAAAA
GTGTTGTAATCATAAGAACAGACAATTAAACCCTATTGTAAGGCGAAAAACATAAGGCAC
GAACTAATGGGAAACGATCAACATCATACAAAGAGCAGGAAAGCATCAAGGGAGTGGAAG
TGACCGAACCAACGGACAGAAAGAACCGTTGACTGGCTGTTAAATGTTCATTTCAATCTG
TATATACACAGTTACAACAAAATGCGTCGTGTGAGAGTATTTGCAATTAAAGAGATACGC
AGCAGCAGTAACAGCAGCAGCCGCGGCAACAGTCCTGCGTTGGAGTTAAGAATGAGCGAT
AGAGAGAGACAGAGAGAGAGAGAGAGAAAAAGTAACAATGAACAACAATGATCACCGCTT
TGTAGGGATTTAGTAAAGCTATCAAATATAACAAATTTGACAAAATTGTGGTCATGCTAA
GAAAGGGGGAAAAAGGAAGCACACAATTTACGCTATAAAGACACACCAGAACACACGAAT
TCCCCCACACCGGCAAACAATTCTAAACAAAAATCCTAGCCTTCATTTTCCGGTCTTCTT
GGCGTGACAACAGTGTGCAGGTTAAAACAAAAAGTTCAATAGGAAATTTCGTTTATGTAG
TTGGAAAGTACATAAGAGTGTGCATAGTGAAAAGCGCTTTAATACACCGGTTCAAATGAA
GCGGAGTAATAAAAAAAGAAGCAAAACACGAACGATAGCAAGTAAAAGCGAATGCAAGAA
ACTATCAAAATACACTCACGCAAACACACACAGAAACACGCAGAAAGAGAAGGTGAAAGG
AGAAGTAGAGGTTAGA

consensusID : consensus_4984#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 369
fasta sequence

                              [CCGGCGAAGAATCGATAGCATAAATAAGTTCTGTCCCGTAAAAAGTGTCGTAATCACAAGAACAGACAATTAAACCCTATCGTAAGGCGAAAAACATAAGGCACGAACTAATGGGAAACGATCAACATCATAGAAAGAGTAGGAAAGCATCAAAGGGTTGGAGGTGACCGAACCAACGGGCAGAAAAAAAACGTTGACTGGCTGTTAAATGTTCATTTAAATCTGTATATACACAGTTACAACAAAATGCGTCGTGTGAGAGTATTTGCAATTAAAGAGATACGCAGCAGCACCAGGAGCAACAGTAACAGCAGCAGCCGCGGCAACAGTCCTGCGTTGGAGTTAAGAATGAGCGATAGAGAGAGAGAG]

[+] EMBL BM624618             [CCGGCGAAGAATCGATAGCATAAATAAGTTCTGTCCCGTAAAAAGTGTCGTAATCACAAGAACAGACAATTAAACCCTATCGTAAGGCGAAAAACATAAGGCACGAACTAATGGGAAACGATCAACATCATAGAAAGAGTAGGAAAGCATCAAAGGGTTGGAGGTGACCGAACCAACGGGCAGAAAAAAAACGTTGACTGGCTGTTAAATGTTCATTTAAATCTGTATATACACAGTTACAACAAAATGCGTCGTGTGAGAGTATTTGCAATTAAAGAGATACGCAGCAGCACCAGGAGCAACAGTAACAGCAGCAGCCGCGGCAACAGTCCTGCGTTGGAGTTAAGAATGAGCGATAGAGAGAGAGAG]




>consensus_4984#1
CCGGCGAAGAATCGATAGCATAAATAAGTTCTGTCCCGTAAAAAGTGTCGTAATCACAAG
AACAGACAATTAAACCCTATCGTAAGGCGAAAAACATAAGGCACGAACTAATGGGAAACG
ATCAACATCATAGAAAGAGTAGGAAAGCATCAAAGGGTTGGAGGTGACCGAACCAACGGG
CAGAAAAAAAACGTTGACTGGCTGTTAAATGTTCATTTAAATCTGTATATACACAGTTAC
AACAAAATGCGTCGTGTGAGAGTATTTGCAATTAAAGAGATACGCAGCAGCACCAGGAGC
AACAGTAACAGCAGCAGCCGCGGCAACAGTCCTGCGTTGGAGTTAAGAATGAGCGATAGA
GAGAGAGAG

consensusID : consensus_4984#2
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 330
fasta sequence

                              [TTCAATAGGAAATTCCGTTTATGTAGGGGAAAGTACATAAGAGTGTGCATAGTGAAAAGCGCTTTAATACAAAGAAGCAAAACACGAACGATAGCAAGTAAAAGCGAATGCAAGAAACTATCAAAATACACTCACGCAAACACACACAGAAACACGCAAAAAGAGAAGGTGAAAGGAGAAGGAGAGGTTAGATTTAGAAGCGCAGAATTAGAATTGGGTAAAAATCGGTCAGAAATTATGATTTTTTATTATTTCTGTCTGTGTGACACAGAGAGAGAGAAGAAATAACGTTTTGTAAATATTATTGTACGGTAAAAGAAAGAAAACAAG]

[-] EMBL AGA282705            [TTCAATAGGAAATTCCGTTTATGTAGGGGAAAGTACATAAGAGTGTGCATAGTGAAAAGCGCTTTAATACAAAGAAGCAAAACACGAACGATAGCAAGTAAAAGCGAATGCAAGAAACTATCAAAATACACTCACGCAAACACACACAGAAACACGCAAAAAGAGAAGGTGAAAGGAGAAGGAGAGGTTAGATTTAGAAGCGCAGAATTAGAATTGGGTAAAAATCGGTCAGAAATTATGATTTTTTATTATTTCTGTCTGTGTGACACAGAGAGAGAGAAGAAATAACGTTTTGTAAATATTATTGTACGGTAAAAGAAAGAAAACAAG]




>consensus_4984#2
TTCAATAGGAAATTCCGTTTATGTAGGGGAAAGTACATAAGAGTGTGCATAGTGAAAAGC
GCTTTAATACAAAGAAGCAAAACACGAACGATAGCAAGTAAAAGCGAATGCAAGAAACTA
TCAAAATACACTCACGCAAACACACACAGAAACACGCAAAAAGAGAAGGTGAAAGGAGAA
GGAGAGGTTAGATTTAGAAGCGCAGAATTAGAATTGGGTAAAAATCGGTCAGAAATTATG
ATTTTTTATTATTTCTGTCTGTGTGACACAGAGAGAGAGAAGAAATAACGTTTTGTAAAT
ATTATTGTACGGTAAAAGAAAGAAAACAAG

consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_4984#0      CCGGGAAACGAATTGCTGGGCGAAGAATCGATAGCATAAATAGGTTCTGTACCGTAAAAA 60
consensus_4984#1      ----------------CCGGCGAAGAATCGATAGCATAAATAAGTTCTGTCCCGTAAAAA 44
consensus_4984#2      --------------------------------TTCAATAGGAAATTCCGT-TTATGTAGG 27
                                                        **  *  *  *** **    *  *  

consensus_4984#0      GTGTTGTAATCATAAGAACAGACAATTAAACCCTATTGTAAGGCGAAAAACATAAGGCAC 120
consensus_4984#1      GTGTCGTAATCACAAGAACAGACAATTAAACCCTATCGTAAGGCGAAAAACATAAGGCAC 104
consensus_4984#2      GGAAAGTACATAAGAGTGTGCATAGTGAAAAGC-GCTTTAATACAAAGAA-GCAAAACAC 85
                      *    ***   *  **     * * * ***  *     ***  * ** **   **  ***

consensus_4984#0      GAACTAATGGGAAACGATCAACATCATACAAAGAGCAGGAAAGCATCAAGGGAGTGGAAG 180
consensus_4984#1      GAACTAATGGGAAACGATCAACATCATAGAAAGAGTAGGAAAGCATCAAAGGGTTGGAGG 164
consensus_4984#2      GAACGATAGCAAGTAAAAGCGAATGCAAGAAACTATCAAAATACACTCA-----CGCAAA 140
                      **** *  *  *    *     **   * ***       **  **   *      * *  

consensus_4984#0      TGACCGAACCAACGGACAGAAAGAAC-CGTTGACTGGCTGTTAAATGTTC-ATTTCAATC 238
consensus_4984#1      TGACCGAACCAACGGGCAGAAAAAAAACGTTGACTGGCTGTTAAATGTTC-ATTTAAATC 223
consensus_4984#2      CACACACAGAAACACGCAAAAAGAGAAGGTGAAAGGAGAAGGAGAGGTTAGATTTAGAAG 200
                          *  *  ***   ** *** *    **  *  *      * * ***  ****  *  

consensus_4984#0      TGTATATACACAGTTACAACAAAATGCGTCGTGTGAGAGTATTTGCAATTAAAGAGATAC 298
consensus_4984#1      TGTATATACACAGTTACAACAAAATGCGTCGTGTGAGAGTATTTGCAATTAAAGAGATAC 283
consensus_4984#2      CGCAGAATTAGAATTGGGTAAAAATCGGTCAGAAATTATGATTTTTTATTATTTCTGTCT 260
                       * * *   * * **     *****  ***       *  ****   ****      *  

consensus_4984#0      GCAGCAGCA------------GTAACAGCAGCAGCCGCGGCAACAGTCCTGCGTTGGAGT 346
consensus_4984#1      GCAGCAGCACCAGGAGCAACAGTAACAGCAGCAGCCGCGGCAACAGTCCTGCGTTGGAGT 343
consensus_4984#2      GT-GTGACAC--AGAGAGAGAGAAGAAATAAC-GTTTTGTAAATATTATTGTACGGTAAA 316
                      *  *   **            * *  *  * * *    *  ** * *  **    * *  

consensus_4984#0      TAAGAATGAGCGATAGAGAGAGACAGAGAGAGAGAGAGAGAAAAAGTAACAATGAACAAC 406
consensus_4984#1      TAAGAATGAGCGATAGAGAGAGAGAG---------------------------------- 369
consensus_4984#2      AGAAAGAAAACAAG---------------------------------------------- 330
                        * *   * * *                                               

consensus_4984#0      AATGATCACCGCTTTGTAGGGATTTAGTAAAGCTATCAAATATAACAAATTTGACAAAAT 466
consensus_4984#1      ------------------------------------------------------------
consensus_4984#2      ------------------------------------------------------------
                                                                                  

consensus_4984#0      TGTGGTCATGCTAAGAAAGGGGGAAAAAGGAAGCACACAATTTACGCTATAAAGACACAC 526
consensus_4984#1      ------------------------------------------------------------
consensus_4984#2      ------------------------------------------------------------
                                                                                  

consensus_4984#0      CAGAACACACGAATTCCCCCACACCGGCAAACAATTCTAAACAAAAATCCTAGCCTTCAT 586
consensus_4984#1      ------------------------------------------------------------
consensus_4984#2      ------------------------------------------------------------
                                                                                  

consensus_4984#0      TTTCCGGTCTTCTTGGCGTGACAACAGTGTGCAGGTTAAAACAAAAAGTTCAATAGGAAA 646
consensus_4984#1      ------------------------------------------------------------
consensus_4984#2      ------------------------------------------------------------
                                                                                  

consensus_4984#0      TTTCGTTTATGTAGTTGGAAAGTACATAAGAGTGTGCATAGTGAAAAGCGCTTTAATACA 706
consensus_4984#1      ------------------------------------------------------------
consensus_4984#2      ------------------------------------------------------------
                                                                                  

consensus_4984#0      CCGGTTCAAATGAAGCGGAGTAATAAAAAAAGAAGCAAAACACGAACGATAGCAAGTAAA 766
consensus_4984#1      ------------------------------------------------------------
consensus_4984#2      ------------------------------------------------------------
                                                                                  

consensus_4984#0      AGCGAATGCAAGAAACTATCAAAATACACTCACGCAAACACACACAGAAACACGCAGAAA 826
consensus_4984#1      ------------------------------------------------------------
consensus_4984#2      ------------------------------------------------------------
                                                                                  

consensus_4984#0      GAGAAGGTGAAAGGAGAAGTAGAGGTTAGA 856
consensus_4984#1      ------------------------------
consensus_4984#2      ------------------------------