These datas are free for academic use only, please contact me for any other use. Anopheles gambiae see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_4986#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 3 consensus length = 1358 fasta sequence [CCGGTATTGTAAATTGAACCCGAAAATCTAATTTCCCACGTGTTCACTGACCTTAGGTTACCTTCAACTAACATCAGCTTTATTAATCAGCTAATAGTACCCGCATTAGTCGGTGCACCCGAATAACACAATGTGACACTGTCTTTGAAAAAGTGAACAAATTTTGCACACAGCAGGCGGGCGACGCCATCACCACCTGCGCCTAGCAGTTGGGAAGAAGTGTCGTCGAGGTAGTAACAACCAGGCATCTTTAGTGCACCTACTCTTCTTGCACTGTACATGCGCGTGGTCAGACTTGTGTTTGTGCGTGTGTAAGTGTGT-TGTGCATAGGTTGCATTAGCGTTTAAAATGAAAATTCCTCCCCTCTCTAACCTAAATGAATGAGTTATCGAAACCAAGTAGTGATATTTAGAAGATTCTATATACTTACATATATAAACACAAACGAAAGTCTCTCGATATATAAACCGAATTCAATGATAGGGATATCCTCTTATGATAGACACCATTATTCTATTTGAAATGAAGCGAGTGAAGACAACGAAGAGAGCGATACTACTAAAAGTGGGATGAAAGGCAAGTTTAAAAAAAAGTGTATTACAAACCTACCAACTAGGATTGAAAACAGACAGAAACGAGATAAAAAAACACACGCCTTCCAATTATTCTATAAGCAAGCTGACACGTTAGGTTTTTTTTATATAGACTATAGATTAATACTGGATCAGTAGAAGTTTTTTGAAGTAGCGTTGTCTTCGGGAAAGTGTTTGGAGTATGATTAGTATGATGGATAAAGGTATTAAGAACGTGCTCTTACACATTAGGACATACACACACGTACACACATCGGTTGGGGAAGCATTTCTTCTTCTATACCTAGCCAGATGTGATATCGTTGTCATCGTCACCATGGTGACAACGACGCGAACATTAAGCGTAGGGATGAGAAGAAAGGCCCCTAAGCGATCATTCAACATATAAAAACAAAGTTGGCCATCGGGTTTCCCAGAAGCAATAGCCTCTCTATAAAGCGGATCGATATTTCAACACAAAGAAAAGGCAACGGCGTTAGGTGAGTAAACAGAATGAAAACATTAAAAAAAAGGTTCAAAATCAAATGCTATTAGGGTTTTCTTCACAAGTAGCTGCGGGTTGATATTTACCATTTAAAAAGAAAACTGATACGCTAAACTACAAAGAAATGGTCCTCAAATCAGGCGACAACCATGCCAAAATGAAACAAAGATACGTATTTTCTGCTGGGTACAGCTGTCCCTGGGGTATTGAAATAATAACAGCATACCTCTGCAGACAGCAGGCAAGGGGAGTGCCAGGATTGTATGGTAAACGGCCGGAGC] [+] EMBL BM645956 [CCGGTATTGTAAATTGAACCCGAAAATCTAATTTCCCACGTGTTCACTGACCTTAGGTTACCTTCAACTAACATCAGCTTTATTAATCAGCTAATAGTACCCGCATTAGTCGGTGCACCCGAATAACACAATGTGACACTGTCTTTGAAAAAGTGAACAAATTTTGCACACAGCAGGCGGGCGACGCCATCACCACCTGCGCCTAGCAGTTGGGAAGAAGTGTCGTCGAGGTAGTAACAACCAGGCATCTTTAGTGCACCTACTCTTCTTGCACTGTACATGCGCGTGGTCAGACTTGTGTTTGTGCGTGTGTAAGTGTGT TGTGCATAGGTTGCATTAGCGTTTAAAATGAAAATTCCTCCCCTCTCTAACCTAAATGAATGAGTTATCGAAACCAAGTAGTGATATTTAGAAGATTCTATATACTTACATATATAAACACAAACGAAAGTCTCTCGATATATAAACCGAATTCAATGATAGGGATATCCTCTTATGATAGACACCATTATTCTATTTGAAATGAAGCGAGTGAAGACAACGAAGAGAGCGATACTACTAAAAGTGGGATGAAAGGCAAGTTTAAAAAAAAGTGTATTACAAACCTACCAACTAGGATTGAAAACAGACAGAAACGAGATAAAAAAACACACGCCTTCCAATTATTCTATAAGCAAGCTGACACGTTAGGTTTTTTTTATATAGACTATAGATTAATAC ] [+] EMBL BM648720 [ ccGGAAGAAGTGTCGTCGAGGTAGTAACAACCAGGCATCTTTAGTGCACCTACTCTTCTTGCACTGTACATGCGCGTGGTCAGACTTGTGTTTGTGCGTGTGTAAGTGTGTGTGTGCATAGGTTGCATTAGCGTTT AAAATTCCTCCCCTCTCTAACCTAAATGAATGAGTTATCGAAACCAAGTAGTGATATTTAGAAGATTCTATATACTTACATATATAAACACAAACGAAAGTCTCTCGATATATAAACCGAATTCAATGATAGGGATATCCTCTTATGATAGACACCATTATTCTATTTGAAATGAAGCGAGTGAAGACAACGAAGAGAGCGATACTACTAAAAGTGGGATGAAAGGCAAGTTTAAAAAAAAGTGTATTACAAACCTACCAACTAGGATTGAAAACAGACAGAAACGAGATAAAAAAACACACGCCTTCCAATTATTCTATAAGCAAGCTGACACGTTAGG TTTTTTTATATAGACTATAGATTAATACTGGATCAGTAGAAGTTTTTTGAAGTAGCGTTGTCTTCGGGAAAGTGTTTGGAGTATGATTAGTATGATGGATAAAGGTATTAAGAACGTGCTCTTACACATTAGGACATACACACACG ] [+] EMBL BM634646 [ ccggtTTTTTTTTATATAGACTATAGATTAATACTGGATCAGTAGAAGTTTTTTGAAGTAGCGTTGTCTTCGGGAAAGTGTTTGGAGTATGATTAGTATGATGGATAAAGGTATTAAGAACGTGCTCTTACACATTAGGACATACACACACGTACACACATCGGTTGGGGAAGCATTTCTTCTTCTATACCTAGCCAGATGTGATATCGTTGTCATCGTCACCATGGTGACAACGACGCGAACATTAAGCGTAGGGATGAGAAGAAAGGCCCCTAAGCGATCATTCAACATATAAAAACAAAGTTGGCCATCGGGTTTCCCAGAAGCAATAGCCTCTCTATAAAGCGGATCGATATTTCAACACAAAGAAAAGGCAACGGCGTTAGGTGAGTAAACAGAATGAAAACATTAAAAAAAAGGTTCAAAATCAAATGCTATTAGGGTTTTCTTCACAAGTAGCTGCGGGTTGATATTTACCATTTAAAAAGAAAACTGATACGCTAAACTACAAAGAAATGGTCCTCAAATCAGGCGACAACCATGCCAAAATGAAACAAAGATACGTATTTTCTGCTGGGTACAGCTGTCCCTGGGGTATTGAAATAATAACAGCATACCTCTGCAGACAGCAGGCAAGGGGAGTGCCAGGATTGTATGGTAAACGGCCGGAGC] consensusID : consensus_4986#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 665 fasta sequence [CCGCCCACGCGTCCGCCCACGCGTCCGGAGAGAATGAGATGCGTATAAGGCCTTACCGATAAAACTATATATATATATCGGCTGAAAACGGGAAAAATGTACTGTGTTACTCAACGTGTTAAACATTGGTTATTAAAGCGAAACTGAGCAAAATAGGCAGGAGCATTGGAAGAAACCACAAATATGATCACCTGAATTTGTTTCATCTTTTGGTCAAAGAACTTGAAAATTTACTACAACAAACATTACTTAAAATCGTATGCAAATGTTTTACTTCAACACCAAATTGGCTTTAAATTGGCAACACCAAACGTATTGTAAATCGAACCCGAAAATCTCTAATTTCCCACGTGTTCACTGTCCTTAGGTTACCTTCAACTAACACCAGCTTTATTAATCAGCTAATAGTACCCGCATTAGTCGGTGCACCCGAATCGCACAAAAGTGTCACTGTCTTTGAAAAAGTGAACAAATTTTGCACACAGCAGGCGGGCGACGCCATCACCACCTGCGCCTCCTAGCAGTCGGGAAGAAGTGTCGTCGAGGTAGTAACAACCAGAGGTAGTGTAAGTGTGTGTGCATAGGTTGCATTAGCGTTTAAAATGAAAATTCCTCCCCTCTCTAACCTAAATGAATGAGTTATCGAAACCAAGTAGTGATATTTA] [+] EMBL BM634516 [CCGCCCACGCGTCCGCCCACGCGTCCGGAGAGAATGAGATGCGTATAAGGCCTTACCGATAAAACTATATATATATATCGGCTGAAAACGGGAAAAATGTACTGTGTTACTCAACGTGTTAAACATTGGTTATTAAAGCGAAACTGAGCAAAATAGGCAGGAGCATTGGAAGAAACCACAAATATGATCACCTGAATTTGTTTCATCTTTTGGTCAAAGAACTTGAAAATTTACTACAACAAACATTACTTAAAATCGTATGCAAATGTTTTACTTCAACACCAAATTGGCTTTAAATTGGCAACACCAAACGTATTGTAAATCGAACCCGAAAATCTCTAATTTCCCACGTGTTCACTGTCCTTAGGTTACCTTCAACTAACACCAGCTTTATTAATCAGCTAATAGTACCCGCATTAGTCGGTGCACCCGAATCGCACAAAAGTGTCACTGTCTTTGAAAAAGTGAACAAATTTTGCACACAGCAGGCGGGCGACGCCATCACCACCTGCGCCTCCTAGCAGTCGGGAAGAAGTGTCGTCGAGGTAGTAACAACCAGAGGTAGTGTAAGTGTGTGTGCATAGGTTGCATTAGCGTTTAAAATGAAAATTCCTCCCCTCTCTAACCTAAATGAATGAGTTATCGAAACCAAGTAGTGATATTTA] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_4986#0 CCGGTATTGTAAATTGAACCCGAAAATCTAATTTCCCACGTGTTCACTGACCTTAGGTTA 60 consensus_4986#1 ------------------------------------------------------------ consensus_4986#0 CCTTCAACTAACATCAGCTTTATTAATCAGCTAATAGTACCCGCATTAGTCGGTGCACCC 120 consensus_4986#1 ------------------------------------------------------------ consensus_4986#0 GAATAACACAATGTGACACTGTCTTTGAAAAAGTGAACAAATTTTGCACACAGCAGGCGG 180 consensus_4986#1 ------------------------------------------------------------ consensus_4986#0 GCGACGCCATCACCACCTGCGCCTAGCAGTTGGGAAGAAGTGTCGTCGAGGTAGTAACAA 240 consensus_4986#1 ------------------------------------------------------------ consensus_4986#0 CCAGGCATCTTTAGTGCACCTACTCTTCTTGCACTGTACATGCGCGTGGTCAGACTTGTG 300 consensus_4986#1 ---------------------------------------------CCGCCCACGCGTCCG 15 * ** * * * consensus_4986#0 TTTGTGCGTGTGTA-AGTGTGTTGTGCATAGGTTGCATTAGCGTTTAAAATGAAAATTCC 359 consensus_4986#1 CCCACGCGTCCGGAGAGAATGAGATGCGTATAAGGCCTTACCGATAAAACTATATATATA 75 **** * * ** ** *** ** ** *** ** * *** * * ** consensus_4986#0 TCCCCTCTCTAACCTAAATGAATGAGTTATCGAAACCAAGTAGTGATATTTAGAAGATTC 419 consensus_4986#1 TATCGGCTGAAAACGGGAAAAATGTACTGTGTTACTCAA-------CGTGTTAAACATT- 127 * * ** ** * * **** * * * *** * * ** *** consensus_4986#0 TATATACTTACATATATAAACACAAACGAAAGTCTCTCGATATATAAACCGAATTCAATG 479 consensus_4986#1 -----GGTTATTAAAGCGAAACTGAGCAAAA-----TAGGCAGGAGCATTGGAAGAAACC 177 *** * ** * * *** * * * * * * ** consensus_4986#0 ATAGGGATATCCTCTTATGATAGACACCATTATTCTATTTGAAATGAAGCGAGTGAAGAC 539 consensus_4986#1 ACAAATATGATCACCTG-AATTTGTTTCATCTTTTGGTC--AAAGAACTTGAAAATTTAC 234 * * ** * * * ** *** ** * *** * ** ** consensus_4986#0 AACGAAGAGAGCGATACTACTAAAAGTGGGATGAAAGGCAAGTTTAAAAAAAAGTGTATT 599 consensus_4986#1 TACAACAA-----ACATTACTTAAAATCGTATGCAA---ATGTTT-----------TACT 275 ** * * * * **** *** * * *** ** * **** ** * consensus_4986#0 ACAAACCTACCAACTAGGATTGAAAACAGACAGAAACGAGATAAAAAAACACACGCCTTC 659 consensus_4986#1 TCAA---CACCAAATTGGCTTTAAA-TTGGCAACACC---------AAACGTAT---TGT 319 *** ***** * ** ** *** * ** * * **** * * consensus_4986#0 CAATTATTCTATAAGCAAGCTGACACGTTAGGTTTTTTTTATATAGACTATAGATTAATA 719 consensus_4986#1 AAATCGAACCCGAAAATCTCTAATTTCCCACGTGTTCACTGT-----CCTTAGGTTACC- 373 *** * ** ** * * ** ** * * * *** *** consensus_4986#0 CTGGATCAGTAGAAGTTTTTTGAAGTAGCGTTGTCTTCGGGAAAGTGTTTGGAGTATGAT 779 consensus_4986#1 TTCAACTAACACCAGCTTTATTAATCAGCT----------AATAGTACCCGCA------T 417 * * * * ** *** * ** *** * *** * * * consensus_4986#0 TAGTATGATGGATAAAGGTATTAAGAACGTGCTCTTACACATTAGGACATACACACACGT 839 consensus_4986#1 TAGT-CGGTGCACCCGAATCGCACAAAAGTGTCACTGTCTTTGAAAAAGTGAACAAATTT 476 **** * ** * * * ** *** * * * * * *** * * consensus_4986#0 -ACACACATCGGTTGGGGAAGCATTTCTTCTTCTATACCTAGCCAGATGTGATATCGTTG 898 consensus_4986#1 TGCACACAGCAGGCGGGCGACGCCATCACCACCTGCGCCTC-CTAGCAGTCGGGAAGAAG 535 ****** * * *** * ** * ** *** * ** ** * * consensus_4986#0 TCATCGTCACCATGGTGACAACGACGCGAACATTAAGCGTAGGGATGAGAAGAAAGGCCC 958 consensus_4986#1 T----GTCGTCGAGGTAGTAACAAC-CAGAGGT--AGTGTAAGTGTGTGTGCATAGGTTG 588 * *** * *** *** ** * * * ** *** * ** * * *** consensus_4986#0 CTAAGCGATCATTCAACATATAAAAACAAAGTTGGCCATCGGGTTTCCCAGAAGCAATAG 1018 consensus_4986#1 CA----------TTAGCGTTTAAAATGAAAATTCCTCCCCTCTCTAACCTAAATGAATGA 638 * * * * * ***** *** ** * * * ** ** *** consensus_4986#0 CCTCTCTATAAAGCGGATCGATATTTCAACACAAAGAAAAGGCAACGGCGTTAGGTGAGT 1078 consensus_4986#1 GTTATCGAAACCAAGTAGTGATATTTA--------------------------------- 665 * ** * * * * ******* consensus_4986#0 AAACAGAATGAAAACATTAAAAAAAAGGTTCAAAATCAAATGCTATTAGGGTTTTCTTCA 1138 consensus_4986#1 ------------------------------------------------------------ consensus_4986#0 CAAGTAGCTGCGGGTTGATATTTACCATTTAAAAAGAAAACTGATACGCTAAACTACAAA 1198 consensus_4986#1 ------------------------------------------------------------ consensus_4986#0 GAAATGGTCCTCAAATCAGGCGACAACCATGCCAAAATGAAACAAAGATACGTATTTTCT 1258 consensus_4986#1 ------------------------------------------------------------ consensus_4986#0 GCTGGGTACAGCTGTCCCTGGGGTATTGAAATAATAACAGCATACCTCTGCAGACAGCAG 1318 consensus_4986#1 ------------------------------------------------------------ consensus_4986#0 GCAAGGGGAGTGCCAGGATTGTATGGTAAACGGCCGGAGC 1358 consensus_4986#1 ---------------------------------------- |
Copyright Wed Dec 3 12:11:56 CET 2003 Hubert Wassner (hubert.wassner@noos.fr) | ||||