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These datas are free for academic use only, please contact me for any other use. Anopheles gambiae see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_4986#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 3 consensus length = 1358 fasta sequence
[CCGGTATTGTAAATTGAACCCGAAAATCTAATTTCCCACGTGTTCACTGACCTTAGGTTACCTTCAACTAACATCAGCTTTATTAATCAGCTAATAGTACCCGCATTAGTCGGTGCACCCGAATAACACAATGTGACACTGTCTTTGAAAAAGTGAACAAATTTTGCACACAGCAGGCGGGCGACGCCATCACCACCTGCGCCTAGCAGTTGGGAAGAAGTGTCGTCGAGGTAGTAACAACCAGGCATCTTTAGTGCACCTACTCTTCTTGCACTGTACATGCGCGTGGTCAGACTTGTGTTTGTGCGTGTGTAAGTGTGT-TGTGCATAGGTTGCATTAGCGTTTAAAATGAAAATTCCTCCCCTCTCTAACCTAAATGAATGAGTTATCGAAACCAAGTAGTGATATTTAGAAGATTCTATATACTTACATATATAAACACAAACGAAAGTCTCTCGATATATAAACCGAATTCAATGATAGGGATATCCTCTTATGATAGACACCATTATTCTATTTGAAATGAAGCGAGTGAAGACAACGAAGAGAGCGATACTACTAAAAGTGGGATGAAAGGCAAGTTTAAAAAAAAGTGTATTACAAACCTACCAACTAGGATTGAAAACAGACAGAAACGAGATAAAAAAACACACGCCTTCCAATTATTCTATAAGCAAGCTGACACGTTAGGTTTTTTTTATATAGACTATAGATTAATACTGGATCAGTAGAAGTTTTTTGAAGTAGCGTTGTCTTCGGGAAAGTGTTTGGAGTATGATTAGTATGATGGATAAAGGTATTAAGAACGTGCTCTTACACATTAGGACATACACACACGTACACACATCGGTTGGGGAAGCATTTCTTCTTCTATACCTAGCCAGATGTGATATCGTTGTCATCGTCACCATGGTGACAACGACGCGAACATTAAGCGTAGGGATGAGAAGAAAGGCCCCTAAGCGATCATTCAACATATAAAAACAAAGTTGGCCATCGGGTTTCCCAGAAGCAATAGCCTCTCTATAAAGCGGATCGATATTTCAACACAAAGAAAAGGCAACGGCGTTAGGTGAGTAAACAGAATGAAAACATTAAAAAAAAGGTTCAAAATCAAATGCTATTAGGGTTTTCTTCACAAGTAGCTGCGGGTTGATATTTACCATTTAAAAAGAAAACTGATACGCTAAACTACAAAGAAATGGTCCTCAAATCAGGCGACAACCATGCCAAAATGAAACAAAGATACGTATTTTCTGCTGGGTACAGCTGTCCCTGGGGTATTGAAATAATAACAGCATACCTCTGCAGACAGCAGGCAAGGGGAGTGCCAGGATTGTATGGTAAACGGCCGGAGC]
[+] EMBL BM645956 [CCGGTATTGTAAATTGAACCCGAAAATCTAATTTCCCACGTGTTCACTGACCTTAGGTTACCTTCAACTAACATCAGCTTTATTAATCAGCTAATAGTACCCGCATTAGTCGGTGCACCCGAATAACACAATGTGACACTGTCTTTGAAAAAGTGAACAAATTTTGCACACAGCAGGCGGGCGACGCCATCACCACCTGCGCCTAGCAGTTGGGAAGAAGTGTCGTCGAGGTAGTAACAACCAGGCATCTTTAGTGCACCTACTCTTCTTGCACTGTACATGCGCGTGGTCAGACTTGTGTTTGTGCGTGTGTAAGTGTGT TGTGCATAGGTTGCATTAGCGTTTAAAATGAAAATTCCTCCCCTCTCTAACCTAAATGAATGAGTTATCGAAACCAAGTAGTGATATTTAGAAGATTCTATATACTTACATATATAAACACAAACGAAAGTCTCTCGATATATAAACCGAATTCAATGATAGGGATATCCTCTTATGATAGACACCATTATTCTATTTGAAATGAAGCGAGTGAAGACAACGAAGAGAGCGATACTACTAAAAGTGGGATGAAAGGCAAGTTTAAAAAAAAGTGTATTACAAACCTACCAACTAGGATTGAAAACAGACAGAAACGAGATAAAAAAACACACGCCTTCCAATTATTCTATAAGCAAGCTGACACGTTAGGTTTTTTTTATATAGACTATAGATTAATAC ]
[+] EMBL BM648720 [ ccGGAAGAAGTGTCGTCGAGGTAGTAACAACCAGGCATCTTTAGTGCACCTACTCTTCTTGCACTGTACATGCGCGTGGTCAGACTTGTGTTTGTGCGTGTGTAAGTGTGTGTGTGCATAGGTTGCATTAGCGTTT AAAATTCCTCCCCTCTCTAACCTAAATGAATGAGTTATCGAAACCAAGTAGTGATATTTAGAAGATTCTATATACTTACATATATAAACACAAACGAAAGTCTCTCGATATATAAACCGAATTCAATGATAGGGATATCCTCTTATGATAGACACCATTATTCTATTTGAAATGAAGCGAGTGAAGACAACGAAGAGAGCGATACTACTAAAAGTGGGATGAAAGGCAAGTTTAAAAAAAAGTGTATTACAAACCTACCAACTAGGATTGAAAACAGACAGAAACGAGATAAAAAAACACACGCCTTCCAATTATTCTATAAGCAAGCTGACACGTTAGG TTTTTTTATATAGACTATAGATTAATACTGGATCAGTAGAAGTTTTTTGAAGTAGCGTTGTCTTCGGGAAAGTGTTTGGAGTATGATTAGTATGATGGATAAAGGTATTAAGAACGTGCTCTTACACATTAGGACATACACACACG ]
[+] EMBL BM634646 [ ccggtTTTTTTTTATATAGACTATAGATTAATACTGGATCAGTAGAAGTTTTTTGAAGTAGCGTTGTCTTCGGGAAAGTGTTTGGAGTATGATTAGTATGATGGATAAAGGTATTAAGAACGTGCTCTTACACATTAGGACATACACACACGTACACACATCGGTTGGGGAAGCATTTCTTCTTCTATACCTAGCCAGATGTGATATCGTTGTCATCGTCACCATGGTGACAACGACGCGAACATTAAGCGTAGGGATGAGAAGAAAGGCCCCTAAGCGATCATTCAACATATAAAAACAAAGTTGGCCATCGGGTTTCCCAGAAGCAATAGCCTCTCTATAAAGCGGATCGATATTTCAACACAAAGAAAAGGCAACGGCGTTAGGTGAGTAAACAGAATGAAAACATTAAAAAAAAGGTTCAAAATCAAATGCTATTAGGGTTTTCTTCACAAGTAGCTGCGGGTTGATATTTACCATTTAAAAAGAAAACTGATACGCTAAACTACAAAGAAATGGTCCTCAAATCAGGCGACAACCATGCCAAAATGAAACAAAGATACGTATTTTCTGCTGGGTACAGCTGTCCCTGGGGTATTGAAATAATAACAGCATACCTCTGCAGACAGCAGGCAAGGGGAGTGCCAGGATTGTATGGTAAACGGCCGGAGC]
consensusID : consensus_4986#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 665 fasta sequence
[CCGCCCACGCGTCCGCCCACGCGTCCGGAGAGAATGAGATGCGTATAAGGCCTTACCGATAAAACTATATATATATATCGGCTGAAAACGGGAAAAATGTACTGTGTTACTCAACGTGTTAAACATTGGTTATTAAAGCGAAACTGAGCAAAATAGGCAGGAGCATTGGAAGAAACCACAAATATGATCACCTGAATTTGTTTCATCTTTTGGTCAAAGAACTTGAAAATTTACTACAACAAACATTACTTAAAATCGTATGCAAATGTTTTACTTCAACACCAAATTGGCTTTAAATTGGCAACACCAAACGTATTGTAAATCGAACCCGAAAATCTCTAATTTCCCACGTGTTCACTGTCCTTAGGTTACCTTCAACTAACACCAGCTTTATTAATCAGCTAATAGTACCCGCATTAGTCGGTGCACCCGAATCGCACAAAAGTGTCACTGTCTTTGAAAAAGTGAACAAATTTTGCACACAGCAGGCGGGCGACGCCATCACCACCTGCGCCTCCTAGCAGTCGGGAAGAAGTGTCGTCGAGGTAGTAACAACCAGAGGTAGTGTAAGTGTGTGTGCATAGGTTGCATTAGCGTTTAAAATGAAAATTCCTCCCCTCTCTAACCTAAATGAATGAGTTATCGAAACCAAGTAGTGATATTTA]
[+] EMBL BM634516 [CCGCCCACGCGTCCGCCCACGCGTCCGGAGAGAATGAGATGCGTATAAGGCCTTACCGATAAAACTATATATATATATCGGCTGAAAACGGGAAAAATGTACTGTGTTACTCAACGTGTTAAACATTGGTTATTAAAGCGAAACTGAGCAAAATAGGCAGGAGCATTGGAAGAAACCACAAATATGATCACCTGAATTTGTTTCATCTTTTGGTCAAAGAACTTGAAAATTTACTACAACAAACATTACTTAAAATCGTATGCAAATGTTTTACTTCAACACCAAATTGGCTTTAAATTGGCAACACCAAACGTATTGTAAATCGAACCCGAAAATCTCTAATTTCCCACGTGTTCACTGTCCTTAGGTTACCTTCAACTAACACCAGCTTTATTAATCAGCTAATAGTACCCGCATTAGTCGGTGCACCCGAATCGCACAAAAGTGTCACTGTCTTTGAAAAAGTGAACAAATTTTGCACACAGCAGGCGGGCGACGCCATCACCACCTGCGCCTCCTAGCAGTCGGGAAGAAGTGTCGTCGAGGTAGTAACAACCAGAGGTAGTGTAAGTGTGTGTGCATAGGTTGCATTAGCGTTTAAAATGAAAATTCCTCCCCTCTCTAACCTAAATGAATGAGTTATCGAAACCAAGTAGTGATATTTA]
consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment
consensus_4986#0 CCGGTATTGTAAATTGAACCCGAAAATCTAATTTCCCACGTGTTCACTGACCTTAGGTTA 60
consensus_4986#1 ------------------------------------------------------------
consensus_4986#0 CCTTCAACTAACATCAGCTTTATTAATCAGCTAATAGTACCCGCATTAGTCGGTGCACCC 120
consensus_4986#1 ------------------------------------------------------------
consensus_4986#0 GAATAACACAATGTGACACTGTCTTTGAAAAAGTGAACAAATTTTGCACACAGCAGGCGG 180
consensus_4986#1 ------------------------------------------------------------
consensus_4986#0 GCGACGCCATCACCACCTGCGCCTAGCAGTTGGGAAGAAGTGTCGTCGAGGTAGTAACAA 240
consensus_4986#1 ------------------------------------------------------------
consensus_4986#0 CCAGGCATCTTTAGTGCACCTACTCTTCTTGCACTGTACATGCGCGTGGTCAGACTTGTG 300
consensus_4986#1 ---------------------------------------------CCGCCCACGCGTCCG 15
* ** * * *
consensus_4986#0 TTTGTGCGTGTGTA-AGTGTGTTGTGCATAGGTTGCATTAGCGTTTAAAATGAAAATTCC 359
consensus_4986#1 CCCACGCGTCCGGAGAGAATGAGATGCGTATAAGGCCTTACCGATAAAACTATATATATA 75
**** * * ** ** *** ** ** *** ** * *** * * **
consensus_4986#0 TCCCCTCTCTAACCTAAATGAATGAGTTATCGAAACCAAGTAGTGATATTTAGAAGATTC 419
consensus_4986#1 TATCGGCTGAAAACGGGAAAAATGTACTGTGTTACTCAA-------CGTGTTAAACATT- 127
* * ** ** * * **** * * * *** * * ** ***
consensus_4986#0 TATATACTTACATATATAAACACAAACGAAAGTCTCTCGATATATAAACCGAATTCAATG 479
consensus_4986#1 -----GGTTATTAAAGCGAAACTGAGCAAAA-----TAGGCAGGAGCATTGGAAGAAACC 177
*** * ** * * *** * * * * * * **
consensus_4986#0 ATAGGGATATCCTCTTATGATAGACACCATTATTCTATTTGAAATGAAGCGAGTGAAGAC 539
consensus_4986#1 ACAAATATGATCACCTG-AATTTGTTTCATCTTTTGGTC--AAAGAACTTGAAAATTTAC 234
* * ** * * * ** *** ** * *** * ** **
consensus_4986#0 AACGAAGAGAGCGATACTACTAAAAGTGGGATGAAAGGCAAGTTTAAAAAAAAGTGTATT 599
consensus_4986#1 TACAACAA-----ACATTACTTAAAATCGTATGCAA---ATGTTT-----------TACT 275
** * * * * **** *** * * *** ** * **** ** *
consensus_4986#0 ACAAACCTACCAACTAGGATTGAAAACAGACAGAAACGAGATAAAAAAACACACGCCTTC 659
consensus_4986#1 TCAA---CACCAAATTGGCTTTAAA-TTGGCAACACC---------AAACGTAT---TGT 319
*** ***** * ** ** *** * ** * * **** * *
consensus_4986#0 CAATTATTCTATAAGCAAGCTGACACGTTAGGTTTTTTTTATATAGACTATAGATTAATA 719
consensus_4986#1 AAATCGAACCCGAAAATCTCTAATTTCCCACGTGTTCACTGT-----CCTTAGGTTACC- 373
*** * ** ** * * ** ** * * * *** ***
consensus_4986#0 CTGGATCAGTAGAAGTTTTTTGAAGTAGCGTTGTCTTCGGGAAAGTGTTTGGAGTATGAT 779
consensus_4986#1 TTCAACTAACACCAGCTTTATTAATCAGCT----------AATAGTACCCGCA------T 417
* * * * ** *** * ** *** * *** * * *
consensus_4986#0 TAGTATGATGGATAAAGGTATTAAGAACGTGCTCTTACACATTAGGACATACACACACGT 839
consensus_4986#1 TAGT-CGGTGCACCCGAATCGCACAAAAGTGTCACTGTCTTTGAAAAAGTGAACAAATTT 476
**** * ** * * * ** *** * * * * * *** * *
consensus_4986#0 -ACACACATCGGTTGGGGAAGCATTTCTTCTTCTATACCTAGCCAGATGTGATATCGTTG 898
consensus_4986#1 TGCACACAGCAGGCGGGCGACGCCATCACCACCTGCGCCTC-CTAGCAGTCGGGAAGAAG 535
****** * * *** * ** * ** *** * ** ** * *
consensus_4986#0 TCATCGTCACCATGGTGACAACGACGCGAACATTAAGCGTAGGGATGAGAAGAAAGGCCC 958
consensus_4986#1 T----GTCGTCGAGGTAGTAACAAC-CAGAGGT--AGTGTAAGTGTGTGTGCATAGGTTG 588
* *** * *** *** ** * * * ** *** * ** * * ***
consensus_4986#0 CTAAGCGATCATTCAACATATAAAAACAAAGTTGGCCATCGGGTTTCCCAGAAGCAATAG 1018
consensus_4986#1 CA----------TTAGCGTTTAAAATGAAAATTCCTCCCCTCTCTAACCTAAATGAATGA 638
* * * * * ***** *** ** * * * ** ** ***
consensus_4986#0 CCTCTCTATAAAGCGGATCGATATTTCAACACAAAGAAAAGGCAACGGCGTTAGGTGAGT 1078
consensus_4986#1 GTTATCGAAACCAAGTAGTGATATTTA--------------------------------- 665
* ** * * * * *******
consensus_4986#0 AAACAGAATGAAAACATTAAAAAAAAGGTTCAAAATCAAATGCTATTAGGGTTTTCTTCA 1138
consensus_4986#1 ------------------------------------------------------------
consensus_4986#0 CAAGTAGCTGCGGGTTGATATTTACCATTTAAAAAGAAAACTGATACGCTAAACTACAAA 1198
consensus_4986#1 ------------------------------------------------------------
consensus_4986#0 GAAATGGTCCTCAAATCAGGCGACAACCATGCCAAAATGAAACAAAGATACGTATTTTCT 1258
consensus_4986#1 ------------------------------------------------------------
consensus_4986#0 GCTGGGTACAGCTGTCCCTGGGGTATTGAAATAATAACAGCATACCTCTGCAGACAGCAG 1318
consensus_4986#1 ------------------------------------------------------------
consensus_4986#0 GCAAGGGGAGTGCCAGGATTGTATGGTAAACGGCCGGAGC 1358
consensus_4986#1 ----------------------------------------
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| Copyright Wed Dec 3 12:11:56 CET 2003 Hubert Wassner (hubert.wassner@noos.fr) | ||||