Home
Who am I
Technology
EST Assembly
Contact

These datas are free for academic use only, please contact me for any other use.

Anopheles gambiae
cluster # 4986 cluster # 4986       Sequences # 4       consensus # 2


see consensus multiple alignment with clustalw

Direct access to contigs :
consensus_4986#0 length = 1358 sequences # 3  
consensus_4986#1 length = 665 sequences # 1  

consensusID : consensus_4986#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 3
consensus length = 1358
fasta sequence
                              [CCGGTATTGTAAATTGAACCCGAAAATCTAATTTCCCACGTGTTCACTGACCTTAGGTTACCTTCAACTAACATCAGCTTTATTAATCAGCTAATAGTACCCGCATTAGTCGGTGCACCCGAATAACACAATGTGACACTGTCTTTGAAAAAGTGAACAAATTTTGCACACAGCAGGCGGGCGACGCCATCACCACCTGCGCCTAGCAGTTGGGAAGAAGTGTCGTCGAGGTAGTAACAACCAGGCATCTTTAGTGCACCTACTCTTCTTGCACTGTACATGCGCGTGGTCAGACTTGTGTTTGTGCGTGTGTAAGTGTGT-TGTGCATAGGTTGCATTAGCGTTTAAAATGAAAATTCCTCCCCTCTCTAACCTAAATGAATGAGTTATCGAAACCAAGTAGTGATATTTAGAAGATTCTATATACTTACATATATAAACACAAACGAAAGTCTCTCGATATATAAACCGAATTCAATGATAGGGATATCCTCTTATGATAGACACCATTATTCTATTTGAAATGAAGCGAGTGAAGACAACGAAGAGAGCGATACTACTAAAAGTGGGATGAAAGGCAAGTTTAAAAAAAAGTGTATTACAAACCTACCAACTAGGATTGAAAACAGACAGAAACGAGATAAAAAAACACACGCCTTCCAATTATTCTATAAGCAAGCTGACACGTTAGGTTTTTTTTATATAGACTATAGATTAATACTGGATCAGTAGAAGTTTTTTGAAGTAGCGTTGTCTTCGGGAAAGTGTTTGGAGTATGATTAGTATGATGGATAAAGGTATTAAGAACGTGCTCTTACACATTAGGACATACACACACGTACACACATCGGTTGGGGAAGCATTTCTTCTTCTATACCTAGCCAGATGTGATATCGTTGTCATCGTCACCATGGTGACAACGACGCGAACATTAAGCGTAGGGATGAGAAGAAAGGCCCCTAAGCGATCATTCAACATATAAAAACAAAGTTGGCCATCGGGTTTCCCAGAAGCAATAGCCTCTCTATAAAGCGGATCGATATTTCAACACAAAGAAAAGGCAACGGCGTTAGGTGAGTAAACAGAATGAAAACATTAAAAAAAAGGTTCAAAATCAAATGCTATTAGGGTTTTCTTCACAAGTAGCTGCGGGTTGATATTTACCATTTAAAAAGAAAACTGATACGCTAAACTACAAAGAAATGGTCCTCAAATCAGGCGACAACCATGCCAAAATGAAACAAAGATACGTATTTTCTGCTGGGTACAGCTGTCCCTGGGGTATTGAAATAATAACAGCATACCTCTGCAGACAGCAGGCAAGGGGAGTGCCAGGATTGTATGGTAAACGGCCGGAGC]

[+] EMBL BM645956             [CCGGTATTGTAAATTGAACCCGAAAATCTAATTTCCCACGTGTTCACTGACCTTAGGTTACCTTCAACTAACATCAGCTTTATTAATCAGCTAATAGTACCCGCATTAGTCGGTGCACCCGAATAACACAATGTGACACTGTCTTTGAAAAAGTGAACAAATTTTGCACACAGCAGGCGGGCGACGCCATCACCACCTGCGCCTAGCAGTTGGGAAGAAGTGTCGTCGAGGTAGTAACAACCAGGCATCTTTAGTGCACCTACTCTTCTTGCACTGTACATGCGCGTGGTCAGACTTGTGTTTGTGCGTGTGTAAGTGTGT TGTGCATAGGTTGCATTAGCGTTTAAAATGAAAATTCCTCCCCTCTCTAACCTAAATGAATGAGTTATCGAAACCAAGTAGTGATATTTAGAAGATTCTATATACTTACATATATAAACACAAACGAAAGTCTCTCGATATATAAACCGAATTCAATGATAGGGATATCCTCTTATGATAGACACCATTATTCTATTTGAAATGAAGCGAGTGAAGACAACGAAGAGAGCGATACTACTAAAAGTGGGATGAAAGGCAAGTTTAAAAAAAAGTGTATTACAAACCTACCAACTAGGATTGAAAACAGACAGAAACGAGATAAAAAAACACACGCCTTCCAATTATTCTATAAGCAAGCTGACACGTTAGGTTTTTTTTATATAGACTATAGATTAATAC                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                              ]
[+] EMBL BM648720             [                                                                                                                                                                                                                  ccGGAAGAAGTGTCGTCGAGGTAGTAACAACCAGGCATCTTTAGTGCACCTACTCTTCTTGCACTGTACATGCGCGTGGTCAGACTTGTGTTTGTGCGTGTGTAAGTGTGTGTGTGCATAGGTTGCATTAGCGTTT      AAAATTCCTCCCCTCTCTAACCTAAATGAATGAGTTATCGAAACCAAGTAGTGATATTTAGAAGATTCTATATACTTACATATATAAACACAAACGAAAGTCTCTCGATATATAAACCGAATTCAATGATAGGGATATCCTCTTATGATAGACACCATTATTCTATTTGAAATGAAGCGAGTGAAGACAACGAAGAGAGCGATACTACTAAAAGTGGGATGAAAGGCAAGTTTAAAAAAAAGTGTATTACAAACCTACCAACTAGGATTGAAAACAGACAGAAACGAGATAAAAAAACACACGCCTTCCAATTATTCTATAAGCAAGCTGACACGTTAGG TTTTTTTATATAGACTATAGATTAATACTGGATCAGTAGAAGTTTTTTGAAGTAGCGTTGTCTTCGGGAAAGTGTTTGGAGTATGATTAGTATGATGGATAAAGGTATTAAGAACGTGCTCTTACACATTAGGACATACACACACG                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                        ]
[+] EMBL BM634646             [                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                               ccggtTTTTTTTTATATAGACTATAGATTAATACTGGATCAGTAGAAGTTTTTTGAAGTAGCGTTGTCTTCGGGAAAGTGTTTGGAGTATGATTAGTATGATGGATAAAGGTATTAAGAACGTGCTCTTACACATTAGGACATACACACACGTACACACATCGGTTGGGGAAGCATTTCTTCTTCTATACCTAGCCAGATGTGATATCGTTGTCATCGTCACCATGGTGACAACGACGCGAACATTAAGCGTAGGGATGAGAAGAAAGGCCCCTAAGCGATCATTCAACATATAAAAACAAAGTTGGCCATCGGGTTTCCCAGAAGCAATAGCCTCTCTATAAAGCGGATCGATATTTCAACACAAAGAAAAGGCAACGGCGTTAGGTGAGTAAACAGAATGAAAACATTAAAAAAAAGGTTCAAAATCAAATGCTATTAGGGTTTTCTTCACAAGTAGCTGCGGGTTGATATTTACCATTTAAAAAGAAAACTGATACGCTAAACTACAAAGAAATGGTCCTCAAATCAGGCGACAACCATGCCAAAATGAAACAAAGATACGTATTTTCTGCTGGGTACAGCTGTCCCTGGGGTATTGAAATAATAACAGCATACCTCTGCAGACAGCAGGCAAGGGGAGTGCCAGGATTGTATGGTAAACGGCCGGAGC]


>consensus_4986#0 CCGGTATTGTAAATTGAACCCGAAAATCTAATTTCCCACGTGTTCACTGACCTTAGGTTA CCTTCAACTAACATCAGCTTTATTAATCAGCTAATAGTACCCGCATTAGTCGGTGCACCC GAATAACACAATGTGACACTGTCTTTGAAAAAGTGAACAAATTTTGCACACAGCAGGCGG GCGACGCCATCACCACCTGCGCCTAGCAGTTGGGAAGAAGTGTCGTCGAGGTAGTAACAA CCAGGCATCTTTAGTGCACCTACTCTTCTTGCACTGTACATGCGCGTGGTCAGACTTGTG TTTGTGCGTGTGTAAGTGTGTTGTGCATAGGTTGCATTAGCGTTTAAAATGAAAATTCCT CCCCTCTCTAACCTAAATGAATGAGTTATCGAAACCAAGTAGTGATATTTAGAAGATTCT ATATACTTACATATATAAACACAAACGAAAGTCTCTCGATATATAAACCGAATTCAATGA TAGGGATATCCTCTTATGATAGACACCATTATTCTATTTGAAATGAAGCGAGTGAAGACA ACGAAGAGAGCGATACTACTAAAAGTGGGATGAAAGGCAAGTTTAAAAAAAAGTGTATTA CAAACCTACCAACTAGGATTGAAAACAGACAGAAACGAGATAAAAAAACACACGCCTTCC AATTATTCTATAAGCAAGCTGACACGTTAGGTTTTTTTTATATAGACTATAGATTAATAC TGGATCAGTAGAAGTTTTTTGAAGTAGCGTTGTCTTCGGGAAAGTGTTTGGAGTATGATT AGTATGATGGATAAAGGTATTAAGAACGTGCTCTTACACATTAGGACATACACACACGTA CACACATCGGTTGGGGAAGCATTTCTTCTTCTATACCTAGCCAGATGTGATATCGTTGTC ATCGTCACCATGGTGACAACGACGCGAACATTAAGCGTAGGGATGAGAAGAAAGGCCCCT AAGCGATCATTCAACATATAAAAACAAAGTTGGCCATCGGGTTTCCCAGAAGCAATAGCC TCTCTATAAAGCGGATCGATATTTCAACACAAAGAAAAGGCAACGGCGTTAGGTGAGTAA ACAGAATGAAAACATTAAAAAAAAGGTTCAAAATCAAATGCTATTAGGGTTTTCTTCACA AGTAGCTGCGGGTTGATATTTACCATTTAAAAAGAAAACTGATACGCTAAACTACAAAGA AATGGTCCTCAAATCAGGCGACAACCATGCCAAAATGAAACAAAGATACGTATTTTCTGC TGGGTACAGCTGTCCCTGGGGTATTGAAATAATAACAGCATACCTCTGCAGACAGCAGGC AAGGGGAGTGCCAGGATTGTATGGTAAACGGCCGGAGC



consensusID : consensus_4986#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 665
fasta sequence
                              [CCGCCCACGCGTCCGCCCACGCGTCCGGAGAGAATGAGATGCGTATAAGGCCTTACCGATAAAACTATATATATATATCGGCTGAAAACGGGAAAAATGTACTGTGTTACTCAACGTGTTAAACATTGGTTATTAAAGCGAAACTGAGCAAAATAGGCAGGAGCATTGGAAGAAACCACAAATATGATCACCTGAATTTGTTTCATCTTTTGGTCAAAGAACTTGAAAATTTACTACAACAAACATTACTTAAAATCGTATGCAAATGTTTTACTTCAACACCAAATTGGCTTTAAATTGGCAACACCAAACGTATTGTAAATCGAACCCGAAAATCTCTAATTTCCCACGTGTTCACTGTCCTTAGGTTACCTTCAACTAACACCAGCTTTATTAATCAGCTAATAGTACCCGCATTAGTCGGTGCACCCGAATCGCACAAAAGTGTCACTGTCTTTGAAAAAGTGAACAAATTTTGCACACAGCAGGCGGGCGACGCCATCACCACCTGCGCCTCCTAGCAGTCGGGAAGAAGTGTCGTCGAGGTAGTAACAACCAGAGGTAGTGTAAGTGTGTGTGCATAGGTTGCATTAGCGTTTAAAATGAAAATTCCTCCCCTCTCTAACCTAAATGAATGAGTTATCGAAACCAAGTAGTGATATTTA]

[+] EMBL BM634516             [CCGCCCACGCGTCCGCCCACGCGTCCGGAGAGAATGAGATGCGTATAAGGCCTTACCGATAAAACTATATATATATATCGGCTGAAAACGGGAAAAATGTACTGTGTTACTCAACGTGTTAAACATTGGTTATTAAAGCGAAACTGAGCAAAATAGGCAGGAGCATTGGAAGAAACCACAAATATGATCACCTGAATTTGTTTCATCTTTTGGTCAAAGAACTTGAAAATTTACTACAACAAACATTACTTAAAATCGTATGCAAATGTTTTACTTCAACACCAAATTGGCTTTAAATTGGCAACACCAAACGTATTGTAAATCGAACCCGAAAATCTCTAATTTCCCACGTGTTCACTGTCCTTAGGTTACCTTCAACTAACACCAGCTTTATTAATCAGCTAATAGTACCCGCATTAGTCGGTGCACCCGAATCGCACAAAAGTGTCACTGTCTTTGAAAAAGTGAACAAATTTTGCACACAGCAGGCGGGCGACGCCATCACCACCTGCGCCTCCTAGCAGTCGGGAAGAAGTGTCGTCGAGGTAGTAACAACCAGAGGTAGTGTAAGTGTGTGTGCATAGGTTGCATTAGCGTTTAAAATGAAAATTCCTCCCCTCTCTAACCTAAATGAATGAGTTATCGAAACCAAGTAGTGATATTTA]


>consensus_4986#1 CCGCCCACGCGTCCGCCCACGCGTCCGGAGAGAATGAGATGCGTATAAGGCCTTACCGAT AAAACTATATATATATATCGGCTGAAAACGGGAAAAATGTACTGTGTTACTCAACGTGTT AAACATTGGTTATTAAAGCGAAACTGAGCAAAATAGGCAGGAGCATTGGAAGAAACCACA AATATGATCACCTGAATTTGTTTCATCTTTTGGTCAAAGAACTTGAAAATTTACTACAAC AAACATTACTTAAAATCGTATGCAAATGTTTTACTTCAACACCAAATTGGCTTTAAATTG GCAACACCAAACGTATTGTAAATCGAACCCGAAAATCTCTAATTTCCCACGTGTTCACTG TCCTTAGGTTACCTTCAACTAACACCAGCTTTATTAATCAGCTAATAGTACCCGCATTAG TCGGTGCACCCGAATCGCACAAAAGTGTCACTGTCTTTGAAAAAGTGAACAAATTTTGCA CACAGCAGGCGGGCGACGCCATCACCACCTGCGCCTCCTAGCAGTCGGGAAGAAGTGTCG TCGAGGTAGTAACAACCAGAGGTAGTGTAAGTGTGTGTGCATAGGTTGCATTAGCGTTTA AAATGAAAATTCCTCCCCTCTCTAACCTAAATGAATGAGTTATCGAAACCAAGTAGTGAT ATTTA



consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_4986#0      CCGGTATTGTAAATTGAACCCGAAAATCTAATTTCCCACGTGTTCACTGACCTTAGGTTA 60
consensus_4986#1      ------------------------------------------------------------
                                                                                  

consensus_4986#0      CCTTCAACTAACATCAGCTTTATTAATCAGCTAATAGTACCCGCATTAGTCGGTGCACCC 120
consensus_4986#1      ------------------------------------------------------------
                                                                                  

consensus_4986#0      GAATAACACAATGTGACACTGTCTTTGAAAAAGTGAACAAATTTTGCACACAGCAGGCGG 180
consensus_4986#1      ------------------------------------------------------------
                                                                                  

consensus_4986#0      GCGACGCCATCACCACCTGCGCCTAGCAGTTGGGAAGAAGTGTCGTCGAGGTAGTAACAA 240
consensus_4986#1      ------------------------------------------------------------
                                                                                  

consensus_4986#0      CCAGGCATCTTTAGTGCACCTACTCTTCTTGCACTGTACATGCGCGTGGTCAGACTTGTG 300
consensus_4986#1      ---------------------------------------------CCGCCCACGCGTCCG 15
                                                                     *  **  * *  *

consensus_4986#0      TTTGTGCGTGTGTA-AGTGTGTTGTGCATAGGTTGCATTAGCGTTTAAAATGAAAATTCC 359
consensus_4986#1      CCCACGCGTCCGGAGAGAATGAGATGCGTATAAGGCCTTACCGATAAAACTATATATATA 75
                           ****  * * **  **   *** **    ** *** ** * *** *  * **   

consensus_4986#0      TCCCCTCTCTAACCTAAATGAATGAGTTATCGAAACCAAGTAGTGATATTTAGAAGATTC 419
consensus_4986#1      TATCGGCTGAAAACGGGAAAAATGTACTGTGTTACTCAA-------CGTGTTAAACATT- 127
                      *  *  **  ** *   *  ****   * *   *  ***         * *  ** *** 

consensus_4986#0      TATATACTTACATATATAAACACAAACGAAAGTCTCTCGATATATAAACCGAATTCAATG 479
consensus_4986#1      -----GGTTATTAAAGCGAAACTGAGCAAAA-----TAGGCAGGAGCATTGGAAGAAACC 177
                             ***   *    **    * * ***     * *  *     *  * *   **  

consensus_4986#0      ATAGGGATATCCTCTTATGATAGACACCATTATTCTATTTGAAATGAAGCGAGTGAAGAC 539
consensus_4986#1      ACAAATATGATCACCTG-AATTTGTTTCATCTTTTGGTC--AAAGAACTTGAAAATTTAC 234
                      * *   **   * * *   **      ***  **   *   ***  *   **      **

consensus_4986#0      AACGAAGAGAGCGATACTACTAAAAGTGGGATGAAAGGCAAGTTTAAAAAAAAGTGTATT 599
consensus_4986#1      TACAACAA-----ACATTACTTAAAATCGTATGCAA---ATGTTT-----------TACT 275
                       ** *  *     * * **** *** * * *** **   * ****           ** *

consensus_4986#0      ACAAACCTACCAACTAGGATTGAAAACAGACAGAAACGAGATAAAAAAACACACGCCTTC 659
consensus_4986#1      TCAA---CACCAAATTGGCTTTAAA-TTGGCAACACC---------AAACGTAT---TGT 319
                       ***    ***** * ** ** ***   * **  * *         ****  *    *  

consensus_4986#0      CAATTATTCTATAAGCAAGCTGACACGTTAGGTTTTTTTTATATAGACTATAGATTAATA 719
consensus_4986#1      AAATCGAACCCGAAAATCTCTAATTTCCCACGTGTTCACTGT-----CCTTAGGTTACC- 373
                       ***    *   **     ** *      * ** **   * *     *  *** ***   

consensus_4986#0      CTGGATCAGTAGAAGTTTTTTGAAGTAGCGTTGTCTTCGGGAAAGTGTTTGGAGTATGAT 779
consensus_4986#1      TTCAACTAACACCAGCTTTATTAATCAGCT----------AATAGTACCCGCA------T 417
                       *  *  *  *  ** *** * **  ***            * ***    * *      *

consensus_4986#0      TAGTATGATGGATAAAGGTATTAAGAACGTGCTCTTACACATTAGGACATACACACACGT 839
consensus_4986#1      TAGT-CGGTGCACCCGAATCGCACAAAAGTGTCACTGTCTTTGAAAAAGTGAACAAATTT 476
                      ****  * ** *      *   *  ** ***    *     * *  *  *  *** *  *

consensus_4986#0      -ACACACATCGGTTGGGGAAGCATTTCTTCTTCTATACCTAGCCAGATGTGATATCGTTG 898
consensus_4986#1      TGCACACAGCAGGCGGGCGACGCCATCACCACCTGCGCCTC-CTAGCAGTCGGGAAGAAG 535
                        ****** * *  ***  *     **  *  **   ***  * **  **      *  *

consensus_4986#0      TCATCGTCACCATGGTGACAACGACGCGAACATTAAGCGTAGGGATGAGAAGAAAGGCCC 958
consensus_4986#1      T----GTCGTCGAGGTAGTAACAAC-CAGAGGT--AGTGTAAGTGTGTGTGCATAGGTTG 588
                      *    ***  *  ***   *** ** *  *  *  ** *** *  ** *   * ***   

consensus_4986#0      CTAAGCGATCATTCAACATATAAAAACAAAGTTGGCCATCGGGTTTCCCAGAAGCAATAG 1018
consensus_4986#1      CA----------TTAGCGTTTAAAATGAAAATTCCTCCCCTCTCTAACCTAAATGAATGA 638
                      *           * * * * *****  *** **   *  *    *  **  **  ***  

consensus_4986#0      CCTCTCTATAAAGCGGATCGATATTTCAACACAAAGAAAAGGCAACGGCGTTAGGTGAGT 1078
consensus_4986#1      GTTATCGAAACCAAGTAGTGATATTTA--------------------------------- 665
                        * ** * *    * *  *******                                  

consensus_4986#0      AAACAGAATGAAAACATTAAAAAAAAGGTTCAAAATCAAATGCTATTAGGGTTTTCTTCA 1138
consensus_4986#1      ------------------------------------------------------------
                                                                                  

consensus_4986#0      CAAGTAGCTGCGGGTTGATATTTACCATTTAAAAAGAAAACTGATACGCTAAACTACAAA 1198
consensus_4986#1      ------------------------------------------------------------
                                                                                  

consensus_4986#0      GAAATGGTCCTCAAATCAGGCGACAACCATGCCAAAATGAAACAAAGATACGTATTTTCT 1258
consensus_4986#1      ------------------------------------------------------------
                                                                                  

consensus_4986#0      GCTGGGTACAGCTGTCCCTGGGGTATTGAAATAATAACAGCATACCTCTGCAGACAGCAG 1318
consensus_4986#1      ------------------------------------------------------------
                                                                                  

consensus_4986#0      GCAAGGGGAGTGCCAGGATTGTATGGTAAACGGCCGGAGC 1358
consensus_4986#1      ----------------------------------------
                                                              




Copyright Wed Dec 3 12:11:56 CET 2003 Hubert Wassner    (hubert.wassner@noos.fr)