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Anopheles gambiae
cluster # 4996 cluster # 4996       Sequences # 4       consensus # 2


see consensus multiple alignment with clustalw

Direct access to contigs :
consensus_4996#0 length = 785 sequences # 1  
consensus_4996#1 length = 657 sequences # 3  

consensusID : consensus_4996#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 785
fasta sequence
                              [CCCGAGGTTAACTGACAATACAAGCGTAGGGTTGCAGCAATACTGTAAAAAACAAAAACAAACAAAAACACACAGCAAAACATAATTCTAAGTAGTAACAACCTACCTGGTAAGCGTATGTGTAATTATCTGTATGTTTTCAATTTTTATAACTCATTTGTTAATTGTGCGAGCTAGGAAAAAAGGAGCTAATGACATGTGTGGTGGTTGAAAAGGGAGCGCGCGTTAGTGTTATGTTGCACCGGACCGTTGTAGTGGGGACGAAACGCACGGCTTTTAGACAAGGCGGCGTCGAGTTCTGTGTGTAGTTAGTGTNTTAGTGTATTATAGTGCGCGCTCTGCCCGCACCCTCCCCGTTTGGCGCGATACGATAAGTGAGTAGAACAATAAGGTGATAGTTCAATTCAAATGGCAAAGAAAACGGGGAAAGCAGTTATATTTATAACATGACCACCGTATACACAGGCGTNACACGCACGGNNTNTAACGGATTACATCTTGACACCCTTCCCCCCCCTGATCGGGTGACTCGATGAGAGACCANAGCAAACGCTTAGGATCAAAGGTATATACCCACTCATTCACCGGCAACCAAACTATAATTATTACACCNNGGCGNCGCCGCGCCCGCCCGCCGTCAACGAAATCCTACCATTATTACNACGCGTGGTTAATTGGCACAAACTATTAGTANTATTCCTCANCTGCACACACTCCTACTNCTCCCGGNCACCGNACNATCTCNNAGNCACGCAACGCATTTAGNCTACTACTAACACGAATTG]

[+] EMBL AL695502             [CCCGAGGTTAACTGACAATACAAGCGTAGGGTTGCAGCAATACTGTAAAAAACAAAAACAAACAAAAACACACAGCAAAACATAATTCTAAGTAGTAACAACCTACCTGGTAAGCGTATGTGTAATTATCTGTATGTTTTCAATTTTTATAACTCATTTGTTAATTGTGCGAGCTAGGAAAAAAGGAGCTAATGACATGTGTGGTGGTTGAAAAGGGAGCGCGCGTTAGTGTTATGTTGCACCGGACCGTTGTAGTGGGGACGAAACGCACGGCTTTTAGACAAGGCGGCGTCGAGTTCTGTGTGTAGTTAGTGTNTTAGTGTATTATAGTGCGCGCTCTGCCCGCACCCTCCCCGTTTGGCGCGATACGATAAGTGAGTAGAACAATAAGGTGATAGTTCAATTCAAATGGCAAAGAAAACGGGGAAAGCAGTTATATTTATAACATGACCACCGTATACACAGGCGTNACACGCACGGNNTNTAACGGATTACATCTTGACACCCTTCCCCCCCCTGATCGGGTGACTCGATGAGAGACCANAGCAAACGCTTAGGATCAAAGGTATATACCCACTCATTCACCGGCAACCAAACTATAATTATTACACCNNGGCGNCGCCGCGCCCGCCCGCCGTCAACGAAATCCTACCATTATTACNACGCGTGGTTAATTGGCACAAACTATTAGTANTATTCCTCANCTGCACACACTCCTACTNCTCCCGGNCACCGNACNATCTCNNAGNCACGCAACGCATTTAGNCTACTACTAACACGAATTG]


>consensus_4996#0 CCCGAGGTTAACTGACAATACAAGCGTAGGGTTGCAGCAATACTGTAAAAAACAAAAACA AACAAAAACACACAGCAAAACATAATTCTAAGTAGTAACAACCTACCTGGTAAGCGTATG TGTAATTATCTGTATGTTTTCAATTTTTATAACTCATTTGTTAATTGTGCGAGCTAGGAA AAAAGGAGCTAATGACATGTGTGGTGGTTGAAAAGGGAGCGCGCGTTAGTGTTATGTTGC ACCGGACCGTTGTAGTGGGGACGAAACGCACGGCTTTTAGACAAGGCGGCGTCGAGTTCT GTGTGTAGTTAGTGTNTTAGTGTATTATAGTGCGCGCTCTGCCCGCACCCTCCCCGTTTG GCGCGATACGATAAGTGAGTAGAACAATAAGGTGATAGTTCAATTCAAATGGCAAAGAAA ACGGGGAAAGCAGTTATATTTATAACATGACCACCGTATACACAGGCGTNACACGCACGG NNTNTAACGGATTACATCTTGACACCCTTCCCCCCCCTGATCGGGTGACTCGATGAGAGA CCANAGCAAACGCTTAGGATCAAAGGTATATACCCACTCATTCACCGGCAACCAAACTAT AATTATTACACCNNGGCGNCGCCGCGCCCGCCCGCCGTCAACGAAATCCTACCATTATTA CNACGCGTGGTTAATTGGCACAAACTATTAGTANTATTCCTCANCTGCACACACTCCTAC TNCTCCCGGNCACCGNACNATCTCNNAGNCACGCAACGCATTTAGNCTACTACTAACACG AATTG



consensusID : consensus_4996#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 3
consensus length = 657
fasta sequence
                              [TTTCCTTTTTTTAACTATTTAAGTTGTACTACTCCGGGCTTAAGCACTCTTAATTTCATGCTTTATTTAGAGGCGAAAAGTTAGACGATACAC-ACAAGGCTCTGACAAATTACAAGCGTA-GGGTTGCAGCAATACTGTAAAAAACAAAAACAAACAAAAACACACAGCAAAACATAATTCTAAGTAGTAACAACCTACCT-GGTAAGCGTATGTGTAATTATCTGTATGTTTTCAATTTTTATAACTCATTTGTTAATTGTGCGAGCTAGGAAAAAGGAGCTAATGACATGTGTGGTGGTTAAAAGGGAGCGCGCGTTAGTGTTATGTTGCACCGGACCGTTGTAGTGGGGACGAAACGCACGGCTTTTAGAAAGGCGGCGTCGAGTTCTGTGTGTAGTTAGTGTTTTAGTGTATTATAGTGCGCGCTCTGCCCGCACCCTCCCCGTTTGGCGCGATACGATAAGTGAGTAGAACAATAAGGTGATAGTTAATTAGATGGCAAAGAAAACGGGGAAAGCAGTTATATTTTAAATGACCACGTTACACAGCGTTACACGCACGGTTTAACGGATTACATCTTGACCCTTCCCCCCCTTGTCGGGTGAATCGATGAGAGACAAGCAAACGTTAGGATCAAAGGTATATACACACTCATTA]

[+] EMBL BX625493             [TTTCCTTTTTTTAACTATTTAAGTTGTACTACTCCGGGCTTAAGCACTCTTAATTTCATGCTTTATTTAGAGGCGAAAAGTTAGACGATACAC ACAAGGCTCTGACAAATTACAAGCGTA GGGTTGCAGCAATACTGTAAAAAACAAAAACAAACAAAAACACACAGCAAAACATAATTCTAAGTAGTAACAACCTACCT GGTAAGCGTATGTGTAATTATCTGTATGTTTTCAATTTTTATAACTCATTTGTTAATTGTGCGAGCTAGGAAAAAGGAGCTAATGACATGTGTGGTGGTTAAAAGGGAGCGCGCGTTAGTGTTATGTTGCACCGGACCGTTGTAGTGGGGACGAAACGCACGGCTTTTAGAAAGGCGGCGTCGAGTTCTGTGTGTAGTTAGTGTTTTAGTGTATTATAGTGCGCGCTCTGCCCGCACCCTCCCCGTTTGGCGCGATACGATAAGTGAGTAGAACAATAAGGTGATAGTTAATTAGATGGCAAAGAAAACGGGGAAAGCAGTTATATTTTAAATGACCACGTTACACAGCGTTACACGCACGGTTTAACGGATTACATCTTGACCCTTCCCCCCCTTGTCGGGTGAATCGATGAGAGACAAGCAAACGTTAGGATCAAAGGTATATACACACTCATTA]
[+] EMBL BX628262             [                 TTTAAGTTGTACTACTCCGGGCTTAAGCACTCTTAATTTCATGCTTTATTTAGAGGCGAAAAGTTAGACGATACAC ACAAGGCTCTGACAAATTACAAGCGTA GGGTTGCAGCAATACTGTAAAAAACAAAAACAAACAAAAACACACAGCAAAACATAATTCTAAGTAGTAACAACCTACCT GGTAAGCGTATGTGTAATTATCTGTATGTTTTCAATTTTTATAACTCATTTGTTAATTGTGCGAGCTAGGAAAAAGGAGCTAATGACATGTGTGGTGGTTAAAAGGGAGCGCGCGTTAGTGTTATGTTGCACCGGACCGTTGTAGTGGGGACGAAACGCACGGCTTTTAGAAAGGCGGCGTCGAGTTCTGTGTGTAGTTAGTGTTTTAGTGTATTATAGTGCGCGCTCTGCCCGCACCCTCCCCGTTTGGCGCGATACGATAAGTGAGTAGAACAATAAGGTGATAGTTAATTAGATGGCAAAGAAAACGGGGAAAGCAGTTATATTTTAAATGACCACGTTACACAGCGTTACACGCACGGTTTAACGGATTACATCTTGACCCTTCCCCCCCTTGTCGGGTGAATCG                                                ]
[+] EMBL AGA283124            [                 TTTAAGTTGTACTACTTCGGGCTTAAGCACTCTTAATTTCATGCTTTATTTAGAGGCGAAAAGTTAGACGATACACNNTTAGNNNNTGACAAATTACAAGCGTAGGGGTTGCAGCAATACTGTTAAAAACAAAAACAAACAAAAACACACAGCAAAACATAATTCTAAGTAGTAACAACCTACCTGGGTAAGCGTATGTGT                                                                                                                                                                                                                                                                                                                                                                                                                                                          ]


>consensus_4996#1 TTTCCTTTTTTTAACTATTTAAGTTGTACTACTCCGGGCTTAAGCACTCTTAATTTCATG CTTTATTTAGAGGCGAAAAGTTAGACGATACACACAAGGCTCTGACAAATTACAAGCGTA GGGTTGCAGCAATACTGTAAAAAACAAAAACAAACAAAAACACACAGCAAAACATAATTC TAAGTAGTAACAACCTACCTGGTAAGCGTATGTGTAATTATCTGTATGTTTTCAATTTTT ATAACTCATTTGTTAATTGTGCGAGCTAGGAAAAAGGAGCTAATGACATGTGTGGTGGTT AAAAGGGAGCGCGCGTTAGTGTTATGTTGCACCGGACCGTTGTAGTGGGGACGAAACGCA CGGCTTTTAGAAAGGCGGCGTCGAGTTCTGTGTGTAGTTAGTGTTTTAGTGTATTATAGT GCGCGCTCTGCCCGCACCCTCCCCGTTTGGCGCGATACGATAAGTGAGTAGAACAATAAG GTGATAGTTAATTAGATGGCAAAGAAAACGGGGAAAGCAGTTATATTTTAAATGACCACG TTACACAGCGTTACACGCACGGTTTAACGGATTACATCTTGACCCTTCCCCCCCTTGTCG GGTGAATCGATGAGAGACAAGCAAACGTTAGGATCAAAGGTATATACACACTCATTA



consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_4996#0      ------------------------------------------------------------
consensus_4996#1      TTTCCTTTTTTTAACTATTTAAGTTGTACTACTCCGGGCTTAAGCACTCTTAATTTCATG 60
                                                                                  

consensus_4996#0      --------------------------------CCCGAGGTTAACTGACAA--TACAAGCG 26
consensus_4996#1      CTTTATTTAGAGGCGAAAAGTTAGACGATACACACAAGGCT--CTGACAAATTACAAGCG 118
                                                      * * *** *  *******  ********

consensus_4996#0      TAGGGTTGCAGCAATACTGTAAAAAACAAAAACAAACAAAAACACACAGCAAAACATAAT 86
consensus_4996#1      TAGGGTTGCAGCAATACTGTAAAAAACAAAAACAAACAAAAACACACAGCAAAACATAAT 178
                      ************************************************************

consensus_4996#0      TCTAAGTAGTAACAACCTACCTGGTAAGCGTATGTGTAATTATCTGTATGTTTTCAATTT 146
consensus_4996#1      TCTAAGTAGTAACAACCTACCTGGTAAGCGTATGTGTAATTATCTGTATGTTTTCAATTT 238
                      ************************************************************

consensus_4996#0      TTATAACTCATTTGTTAATTGTGCGAGCTAGGAAAAAAGGAGCTAATGACATGTGTGGTG 206
consensus_4996#1      TTATAACTCATTTGTTAATTGTGCGAGCTAGGAAAAA-GGAGCTAATGACATGTGTGGTG 297
                      ************************************* **********************

consensus_4996#0      GTTGAAAAGGGAGCGCGCGTTAGTGTTATGTTGCACCGGACCGTTGTAGTGGGGACGAAA 266
consensus_4996#1      GTT-AAAAGGGAGCGCGCGTTAGTGTTATGTTGCACCGGACCGTTGTAGTGGGGACGAAA 356
                      *** ********************************************************

consensus_4996#0      CGCACGGCTTTTAGACAAGGCGGCGTCGAGTTCTGTGTGTAGTTAGTGTNTTAGTGTATT 326
consensus_4996#1      CGCACGGCTTTTAGA-AAGGCGGCGTCGAGTTCTGTGTGTAGTTAGTGTTTTAGTGTATT 415
                      *************** ********************************* **********

consensus_4996#0      ATAGTGCGCGCTCTGCCCGCACCCTCCCCGTTTGGCGCGATACGATAAGTGAGTAGAACA 386
consensus_4996#1      ATAGTGCGCGCTCTGCCCGCACCCTCCCCGTTTGGCGCGATACGATAAGTGAGTAGAACA 475
                      ************************************************************

consensus_4996#0      ATAAGGTGATAGTTCAATTCAAATGGCAAAGAAAACGGGGAAAGCAGTTATATTTATAAC 446
consensus_4996#1      ATAAGGTGATAGTTAA--TTAGATGGCAAAGAAAACGGGGAAAGCAGTTATATTT-TAA- 531
                      ************** *  * * ********************************* *** 

consensus_4996#0      ATGACCACCGTATACACAGGCGTNACACGCACGGNNTNTAACGGATTACATCTTGACACC 506
consensus_4996#1      ATGACCACGTTACACA---GCGTTACACGCACGGTTTA--ACGGATTACATCTTGAC--C 584
                      ********  ** ***   **** **********  *   *****************  *

consensus_4996#0      CTTCCCCCCCCTGATCGGGTGACTCGATGAGAGACCANAGCAAACGCTTAGGATCAAAGG 566
consensus_4996#1      CTTCCCCCCCTTG-TCGGGTGAATCGATGAGAGAC--AAGCAAACG-TTAGGATCAAAGG 640
                      ********** ** ******** ************   ******** *************

consensus_4996#0      TATATACCCACTCATTCACCGGCAACCAAACTATAATTATTACACCNNGGCGNCGCCGCG 626
consensus_4996#1      TATATACACACTCATTA------------------------------------------- 657
                      ******* ********                                            

consensus_4996#0      CCCGCCCGCCGTCAACGAAATCCTACCATTATTACNACGCGTGGTTAATTGGCACAAACT 686
consensus_4996#1      ------------------------------------------------------------
                                                                                  

consensus_4996#0      ATTAGTANTATTCCTCANCTGCACACACTCCTACTNCTCCCGGNCACCGNACNATCTCNN 746
consensus_4996#1      ------------------------------------------------------------
                                                                                  

consensus_4996#0      AGNCACGCAACGCATTTAGNCTACTACTAACACGAATTG 785
consensus_4996#1      ---------------------------------------
                                                             




Copyright Wed Dec 3 12:11:56 CET 2003 Hubert Wassner    (hubert.wassner@noos.fr)