These datas are free for academic use only, please contact me for any other use. Anopheles gambiae see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_4996#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 785 fasta sequence [CCCGAGGTTAACTGACAATACAAGCGTAGGGTTGCAGCAATACTGTAAAAAACAAAAACAAACAAAAACACACAGCAAAACATAATTCTAAGTAGTAACAACCTACCTGGTAAGCGTATGTGTAATTATCTGTATGTTTTCAATTTTTATAACTCATTTGTTAATTGTGCGAGCTAGGAAAAAAGGAGCTAATGACATGTGTGGTGGTTGAAAAGGGAGCGCGCGTTAGTGTTATGTTGCACCGGACCGTTGTAGTGGGGACGAAACGCACGGCTTTTAGACAAGGCGGCGTCGAGTTCTGTGTGTAGTTAGTGTNTTAGTGTATTATAGTGCGCGCTCTGCCCGCACCCTCCCCGTTTGGCGCGATACGATAAGTGAGTAGAACAATAAGGTGATAGTTCAATTCAAATGGCAAAGAAAACGGGGAAAGCAGTTATATTTATAACATGACCACCGTATACACAGGCGTNACACGCACGGNNTNTAACGGATTACATCTTGACACCCTTCCCCCCCCTGATCGGGTGACTCGATGAGAGACCANAGCAAACGCTTAGGATCAAAGGTATATACCCACTCATTCACCGGCAACCAAACTATAATTATTACACCNNGGCGNCGCCGCGCCCGCCCGCCGTCAACGAAATCCTACCATTATTACNACGCGTGGTTAATTGGCACAAACTATTAGTANTATTCCTCANCTGCACACACTCCTACTNCTCCCGGNCACCGNACNATCTCNNAGNCACGCAACGCATTTAGNCTACTACTAACACGAATTG] [+] EMBL AL695502 [CCCGAGGTTAACTGACAATACAAGCGTAGGGTTGCAGCAATACTGTAAAAAACAAAAACAAACAAAAACACACAGCAAAACATAATTCTAAGTAGTAACAACCTACCTGGTAAGCGTATGTGTAATTATCTGTATGTTTTCAATTTTTATAACTCATTTGTTAATTGTGCGAGCTAGGAAAAAAGGAGCTAATGACATGTGTGGTGGTTGAAAAGGGAGCGCGCGTTAGTGTTATGTTGCACCGGACCGTTGTAGTGGGGACGAAACGCACGGCTTTTAGACAAGGCGGCGTCGAGTTCTGTGTGTAGTTAGTGTNTTAGTGTATTATAGTGCGCGCTCTGCCCGCACCCTCCCCGTTTGGCGCGATACGATAAGTGAGTAGAACAATAAGGTGATAGTTCAATTCAAATGGCAAAGAAAACGGGGAAAGCAGTTATATTTATAACATGACCACCGTATACACAGGCGTNACACGCACGGNNTNTAACGGATTACATCTTGACACCCTTCCCCCCCCTGATCGGGTGACTCGATGAGAGACCANAGCAAACGCTTAGGATCAAAGGTATATACCCACTCATTCACCGGCAACCAAACTATAATTATTACACCNNGGCGNCGCCGCGCCCGCCCGCCGTCAACGAAATCCTACCATTATTACNACGCGTGGTTAATTGGCACAAACTATTAGTANTATTCCTCANCTGCACACACTCCTACTNCTCCCGGNCACCGNACNATCTCNNAGNCACGCAACGCATTTAGNCTACTACTAACACGAATTG] consensusID : consensus_4996#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 3 consensus length = 657 fasta sequence [TTTCCTTTTTTTAACTATTTAAGTTGTACTACTCCGGGCTTAAGCACTCTTAATTTCATGCTTTATTTAGAGGCGAAAAGTTAGACGATACAC-ACAAGGCTCTGACAAATTACAAGCGTA-GGGTTGCAGCAATACTGTAAAAAACAAAAACAAACAAAAACACACAGCAAAACATAATTCTAAGTAGTAACAACCTACCT-GGTAAGCGTATGTGTAATTATCTGTATGTTTTCAATTTTTATAACTCATTTGTTAATTGTGCGAGCTAGGAAAAAGGAGCTAATGACATGTGTGGTGGTTAAAAGGGAGCGCGCGTTAGTGTTATGTTGCACCGGACCGTTGTAGTGGGGACGAAACGCACGGCTTTTAGAAAGGCGGCGTCGAGTTCTGTGTGTAGTTAGTGTTTTAGTGTATTATAGTGCGCGCTCTGCCCGCACCCTCCCCGTTTGGCGCGATACGATAAGTGAGTAGAACAATAAGGTGATAGTTAATTAGATGGCAAAGAAAACGGGGAAAGCAGTTATATTTTAAATGACCACGTTACACAGCGTTACACGCACGGTTTAACGGATTACATCTTGACCCTTCCCCCCCTTGTCGGGTGAATCGATGAGAGACAAGCAAACGTTAGGATCAAAGGTATATACACACTCATTA] [+] EMBL BX625493 [TTTCCTTTTTTTAACTATTTAAGTTGTACTACTCCGGGCTTAAGCACTCTTAATTTCATGCTTTATTTAGAGGCGAAAAGTTAGACGATACAC ACAAGGCTCTGACAAATTACAAGCGTA GGGTTGCAGCAATACTGTAAAAAACAAAAACAAACAAAAACACACAGCAAAACATAATTCTAAGTAGTAACAACCTACCT GGTAAGCGTATGTGTAATTATCTGTATGTTTTCAATTTTTATAACTCATTTGTTAATTGTGCGAGCTAGGAAAAAGGAGCTAATGACATGTGTGGTGGTTAAAAGGGAGCGCGCGTTAGTGTTATGTTGCACCGGACCGTTGTAGTGGGGACGAAACGCACGGCTTTTAGAAAGGCGGCGTCGAGTTCTGTGTGTAGTTAGTGTTTTAGTGTATTATAGTGCGCGCTCTGCCCGCACCCTCCCCGTTTGGCGCGATACGATAAGTGAGTAGAACAATAAGGTGATAGTTAATTAGATGGCAAAGAAAACGGGGAAAGCAGTTATATTTTAAATGACCACGTTACACAGCGTTACACGCACGGTTTAACGGATTACATCTTGACCCTTCCCCCCCTTGTCGGGTGAATCGATGAGAGACAAGCAAACGTTAGGATCAAAGGTATATACACACTCATTA] [+] EMBL BX628262 [ TTTAAGTTGTACTACTCCGGGCTTAAGCACTCTTAATTTCATGCTTTATTTAGAGGCGAAAAGTTAGACGATACAC ACAAGGCTCTGACAAATTACAAGCGTA GGGTTGCAGCAATACTGTAAAAAACAAAAACAAACAAAAACACACAGCAAAACATAATTCTAAGTAGTAACAACCTACCT GGTAAGCGTATGTGTAATTATCTGTATGTTTTCAATTTTTATAACTCATTTGTTAATTGTGCGAGCTAGGAAAAAGGAGCTAATGACATGTGTGGTGGTTAAAAGGGAGCGCGCGTTAGTGTTATGTTGCACCGGACCGTTGTAGTGGGGACGAAACGCACGGCTTTTAGAAAGGCGGCGTCGAGTTCTGTGTGTAGTTAGTGTTTTAGTGTATTATAGTGCGCGCTCTGCCCGCACCCTCCCCGTTTGGCGCGATACGATAAGTGAGTAGAACAATAAGGTGATAGTTAATTAGATGGCAAAGAAAACGGGGAAAGCAGTTATATTTTAAATGACCACGTTACACAGCGTTACACGCACGGTTTAACGGATTACATCTTGACCCTTCCCCCCCTTGTCGGGTGAATCG ] [+] EMBL AGA283124 [ TTTAAGTTGTACTACTTCGGGCTTAAGCACTCTTAATTTCATGCTTTATTTAGAGGCGAAAAGTTAGACGATACACNNTTAGNNNNTGACAAATTACAAGCGTAGGGGTTGCAGCAATACTGTTAAAAACAAAAACAAACAAAAACACACAGCAAAACATAATTCTAAGTAGTAACAACCTACCTGGGTAAGCGTATGTGT ] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_4996#0 ------------------------------------------------------------ consensus_4996#1 TTTCCTTTTTTTAACTATTTAAGTTGTACTACTCCGGGCTTAAGCACTCTTAATTTCATG 60 consensus_4996#0 --------------------------------CCCGAGGTTAACTGACAA--TACAAGCG 26 consensus_4996#1 CTTTATTTAGAGGCGAAAAGTTAGACGATACACACAAGGCT--CTGACAAATTACAAGCG 118 * * *** * ******* ******** consensus_4996#0 TAGGGTTGCAGCAATACTGTAAAAAACAAAAACAAACAAAAACACACAGCAAAACATAAT 86 consensus_4996#1 TAGGGTTGCAGCAATACTGTAAAAAACAAAAACAAACAAAAACACACAGCAAAACATAAT 178 ************************************************************ consensus_4996#0 TCTAAGTAGTAACAACCTACCTGGTAAGCGTATGTGTAATTATCTGTATGTTTTCAATTT 146 consensus_4996#1 TCTAAGTAGTAACAACCTACCTGGTAAGCGTATGTGTAATTATCTGTATGTTTTCAATTT 238 ************************************************************ consensus_4996#0 TTATAACTCATTTGTTAATTGTGCGAGCTAGGAAAAAAGGAGCTAATGACATGTGTGGTG 206 consensus_4996#1 TTATAACTCATTTGTTAATTGTGCGAGCTAGGAAAAA-GGAGCTAATGACATGTGTGGTG 297 ************************************* ********************** consensus_4996#0 GTTGAAAAGGGAGCGCGCGTTAGTGTTATGTTGCACCGGACCGTTGTAGTGGGGACGAAA 266 consensus_4996#1 GTT-AAAAGGGAGCGCGCGTTAGTGTTATGTTGCACCGGACCGTTGTAGTGGGGACGAAA 356 *** ******************************************************** consensus_4996#0 CGCACGGCTTTTAGACAAGGCGGCGTCGAGTTCTGTGTGTAGTTAGTGTNTTAGTGTATT 326 consensus_4996#1 CGCACGGCTTTTAGA-AAGGCGGCGTCGAGTTCTGTGTGTAGTTAGTGTTTTAGTGTATT 415 *************** ********************************* ********** consensus_4996#0 ATAGTGCGCGCTCTGCCCGCACCCTCCCCGTTTGGCGCGATACGATAAGTGAGTAGAACA 386 consensus_4996#1 ATAGTGCGCGCTCTGCCCGCACCCTCCCCGTTTGGCGCGATACGATAAGTGAGTAGAACA 475 ************************************************************ consensus_4996#0 ATAAGGTGATAGTTCAATTCAAATGGCAAAGAAAACGGGGAAAGCAGTTATATTTATAAC 446 consensus_4996#1 ATAAGGTGATAGTTAA--TTAGATGGCAAAGAAAACGGGGAAAGCAGTTATATTT-TAA- 531 ************** * * * ********************************* *** consensus_4996#0 ATGACCACCGTATACACAGGCGTNACACGCACGGNNTNTAACGGATTACATCTTGACACC 506 consensus_4996#1 ATGACCACGTTACACA---GCGTTACACGCACGGTTTA--ACGGATTACATCTTGAC--C 584 ******** ** *** **** ********** * ***************** * consensus_4996#0 CTTCCCCCCCCTGATCGGGTGACTCGATGAGAGACCANAGCAAACGCTTAGGATCAAAGG 566 consensus_4996#1 CTTCCCCCCCTTG-TCGGGTGAATCGATGAGAGAC--AAGCAAACG-TTAGGATCAAAGG 640 ********** ** ******** ************ ******** ************* consensus_4996#0 TATATACCCACTCATTCACCGGCAACCAAACTATAATTATTACACCNNGGCGNCGCCGCG 626 consensus_4996#1 TATATACACACTCATTA------------------------------------------- 657 ******* ******** consensus_4996#0 CCCGCCCGCCGTCAACGAAATCCTACCATTATTACNACGCGTGGTTAATTGGCACAAACT 686 consensus_4996#1 ------------------------------------------------------------ consensus_4996#0 ATTAGTANTATTCCTCANCTGCACACACTCCTACTNCTCCCGGNCACCGNACNATCTCNN 746 consensus_4996#1 ------------------------------------------------------------ consensus_4996#0 AGNCACGCAACGCATTTAGNCTACTACTAACACGAATTG 785 consensus_4996#1 --------------------------------------- |
Copyright Wed Dec 3 12:11:56 CET 2003 Hubert Wassner (hubert.wassner@noos.fr) | ||||