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These datas are free for academic use only, please contact me for any other use. Anopheles gambiae see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_4999#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 3 consensus length = 846 fasta sequence
[CCGGCAGTTTTAAAACATATCAAAACTCGATGCGTACTCGCAGCAACACAGCAAACAAGCAAACAGAGAAACGACTTCGTTTCGTTAGCTATTTAACTCCCTCTTTCAAGCAAAAAA---GGCCAATAGCA-----ACCTTACACTCTAACATCATTTATGTTTCCACTTGTTGCCACTTTGTTGCGTGTGCCGTTCGTTTTCTTTTCTTTCTTCTTCTTATTGTAATCCTGAACGTATAGAGAGTAGGTTGAACGCGATCGTTATAGTTTATAGCATTGTTAAACCTTTAAAAGTGAAAAAGGTGAACGAATAGTCCCCACAGCTCCCTAAAACAAAGTGATCTTCCCATGTGTCTTGCCTTCTTTTTTTTTAAAGTGTATTTTTGGTTTTTAATAATACAATTCGCTTCTCCCCCTCCTGTTCCTGTTTGA-TTGATAGGCTAGTTTTAATTAGAACGAGAAAGAGGAAATGGAGCGAAATAAAATAAAAAAGCAAAAGAAGTAAACATACACACACACATATACAAGCCTAATCAAAAAGTAGGTATAAAGAGATTGAAATAATGGAAGTAAGAAGAAGGAAAGAAAGGAAAGTAGAAATAAATGGAATTTGTTTNTAAATATACAAATAGAAGATAGCAAAACAAAACAAAGGAAACATATCACACACACACATACAACGCGACACATATTCGCACTGCGGTCTTCCCCACTATCTAATGGGATGGGAAGCAAAAACAGCTAAACTGTTGTTACATATATGTGTGTGTATGTGTCGGTGTGTGTCAGACAAACAATGATTAATTTTAGTCTTATCTATGTATTTACCTAATTAAATATATTGCCGTTAATT]
[+] EMBL BM646572 [CCGGCAGTTTTAAAACATATCAAAACTCGATGCGTACTCGCAGCAACACAGCAAACAAGCAAACAGAGAAACGACTTCGTTTCGTTAGCTATTTAACTCCCTCTTTCAAGCAAAAAAAAGGGCCAATAGCAAAGGTACCTTACGCTCTAACATCATTTATGTTTCCACATGTTGCCACTTTGTTGCGTGTGCCGTTCGTTCTCTTTTCCTTCTTCTTCTTATTGTAATCCTGACCTTATAGATTGTAGGTTGAACGCGATCGTTATAGTTTATAGCATTGTTAAACCTTTAAAAGTGGAAAAGGTGAACGAATAGTCCCCACAGCTCCCTAAAACAAAGTGATCTTCCCATGTGTCTTGCCTTCTTTTTTTTTAAA TGTATTTTTGGTTTTTAATAATACAATTCGCTTCTCCCCCTCCTGTTCCTGTTTGATTTGATAGGCTAGTTTT ]
[+] EMBL BX628316 [ AAACGACTTCGTTTCGTTAGCTATTTAACTCCCTCTTTCAAGCAAAAAA GCCCAAAAGCA ACCTTACACTCTAACATCATTTATGTTTCCACTTGTTGCCACTTTGTTGCGTGTGCCGTTCGTTTTCTTTTCTTTCTTCTTCTTATTGTAATCCTNAACGTATAGAGAGTAGGTTGAACGCGATCGTTATAGTTTATAGCATTGTTAAACCTTTAAAAGTGAAAAAGGTGAACGAATAGTCCCCACAGCTCCCTAAAACAAAGTGATCTTCCCATGTGTCTTGCCTTCTTTTTTTTTAAAGTGTATTTTTGGTTTTTAATAATACAATTCGCTTCTCCCCCTCCTGTTCCTGTTNCA TTGATAGGCTAGTTTTAATTAGAACGAGAAAGAGGAAATGGAGCGAAATAAAATAAAAAAGCAAAAGAAGTAAACATACACACACACATATACAAGCCTAATCAAAAAGTAGGTATAAAGAGATTGAAATAATGGAAGTAAGAAGAAGGAAAGAAAGGAAAGTAGAAATAAATGGAATTTGTTTNTAAATATACAAATAGAAGATAGCAAAACAAAACAAAGGAAACATATCACACACACACATACAACGCGACACATATTCGCACTGCGGTCTTCCCCACTATCTAATGGGATGGGAAGCAAAAACAGCTAAACTGTTGTTACATATATGTGTGTGTATGTGTCGGTGTGTGTCAGACAAACAATGATTAATTTTAGTCTTATCTATGTATTTACCTAATTAAATATATTGCCGTTAATT]
[+] EMBL BX623681 [ ACCTTACACTCTAACATCATTTATGTTTCCACTTGTTGCCACTTTGTTGCGTGTGCCGTTCGTTTTCTTTTCTTTCTTCTTCTTATTGTAATCCTGAACGTATAGAGAGTAGGTTGAACGCGATCGTTATAGTTTATAGCATTGTTAAACCTTTAAAAGTGAAAAAGGTGAACGAATAGTCCCCACAGCTCCCTAAAACAAAGTGATCTTCCCATGTGTCTTGCCTTCTTTTTTTTTAAAGTGTATTTTTGGTTTTTAATAATACAATTCGCTTCTCCCCCTCCTGTTCCTGTTTGA TTGATAGGCTAGTTTTAATTAGAACGAGAAAGAGGAAATGGAGCGAAATAAAATAAAAAAGCAAAAGAAGTAAACATACACACACACATATACAAGCCTAATCAAAAAGTAGGTATAAAGAGATTGAAATAATGGAAGTAAGAAGAAGGAAAGAAAGGAAAGTAGAAATAAATGGAATTTGTTT TAAATATACAAATAGAAGATAGCAAAACCAAACAAAGGAAACATATCACACACACACATACNACGCGACACATATTCGCACTGCGGTCTTNCCCACTATCTAATGGGATGGGAAGCAAAAc ]
consensusID : consensus_4999#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 609 fasta sequence
[TGTGCCGTTCGTTCTCTTTTCTTTCTTCTTCTTATTGTAATCCTGAACTTATAGAGAGTAGGCTGAACGCGATCGTTATAGTTTATATCATTGTTAAACCTTTAAAAGTGGAAAAGGTGAACGAATAGTCCCCACAGCTCCCTAAAACAAAAAAAAAAAAAACAAAACAAACAAACAAGAACAGAAAACTTAACCAAGCTCAGTCATTTGCACAACAACAAAAAAACGTAATGCCAAAAGAAGAAATGAAGTAGCTAAACGTACATTTAAAAGAAAACTAAAGGAATAGATGATAAAAGTCTATGTTTAAAAAATCGTAACATTAACATTTTAAAATGCCAAAACCCTTACTAAAAAAACATGCAATGATGCTAAACATTTGTTAACATGTATAAGAAAGATGTGGAAACTTAGAGTAAACAAAACAAAACCAAACCAAACAAAACAAAACCACAACCCAAGTGTGTGTGCGTGTGTGTGTGGTCGTAAGGTGTGAGTGTATGCGTGGTGGAGGTGTTGGTTGGTTGGAGCAGGAGGAGCAGGAGGAGCAAACAAGGATAACAAAATATACAGCCAGTCATTATATTGATTATGTATGAAAACAAACTG]
[+] EMBL BX615073 [TGTGCCGTTCGTTCTCTTTTCTTTCTTCTTCTTATTGTAATCCTGAACTTATAGAGAGTAGGCTGAACGCGATCGTTATAGTTTATATCATTGTTAAACCTTTAAAAGTGGAAAAGGTGAACGAATAGTCCCCACAGCTCCCTAAAACAAAAAAAAAAAAAACAAAACAAACAAACAAGAACAGAAAACTTAACCAAGCTCAGTCATTTGCACAACAACAAAAAAACGTAATGCCAAAAGAAGAAATGAAGTAGCTAAACGTACATTTAAAAGAAAACTAAAGGAATAGATGATAAAAGTCTATGTTTAAAAAATCGTAACATTAACATTTTAAAATGCCAAAACCCTTACTAAAAAAACATGCAATGATGCTAAACATTTGTTAACATGTATAAGAAAGATGTGGAAACTTAGAGTAAACAAAACAAAACCAAACCAAACAAAACAAAACCACAACCCAAGTGTGTGTGCGTGTGTGTGTGGTCGTAAGGTGTGAGTGTATGCGTGGTGGAGGTGTTGGTTGGTTGGAGCAGGAGGAGCAGGAGGAGCAAACAAGGATAACAAAATATACAGCCAGTCATTATATTGATTATGTATGAAAACAAACTG]
consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment
consensus_4999#0 CCGGCAGTTTTAAAACATATCAAAACTCGATGCGTACTCGCAGCAACACAGCAAACAAGC 60
consensus_4999#1 ------------------------------------------------------------
consensus_4999#0 AAACAGAGAAACGACTTCGTTTCGTTAGCTATTTAACTCCCTCTTTCAAGCAAAAAAGGC 120
consensus_4999#1 ------------------------------------------------------------
consensus_4999#0 CAATAGCAACCTTACACTCTAACATCATTTATGTTTCCACTTGTTGCCACTTTGTTGCGT 180
consensus_4999#1 -----------------------------------------------------------T 1
*
consensus_4999#0 GTGCCGTTCGTTTTCTTTTCTTTCTTCTTCTTATTGTAATCCTGAACGTATAGAGAGTAG 240
consensus_4999#1 GTGCCGTTCGTTCTCTTTTCTTTCTTCTTCTTATTGTAATCCTGAACTTATAGAGAGTAG 61
************ ********************************** ************
consensus_4999#0 GTTGAACGCGATCGTTATAGTTTATAGCATTGTTAAACCTTTAAAAGTGAAAAAGGTGAA 300
consensus_4999#1 GCTGAACGCGATCGTTATAGTTTATATCATTGTTAAACCTTTAAAAGTGGAAAAGGTGAA 121
* ************************ ********************** **********
consensus_4999#0 CGAATAGTCCCCACAGCTCCCTAAAACAAAGTGATCTTCCCATGTGTCTTGCCTTCTTTT 360
consensus_4999#1 CGAATAGTCCCCACAGCTCCCTAAAACAAAAAAAA------------------------- 156
****************************** *
consensus_4999#0 TTTTTAAAGTGTATTTTTGGTTTTTAATAATACAATTCGCTTCTCCCCCTCCTGTTCCTG 420
consensus_4999#1 -----AAAAAACAAAACAAACAAACAAGAACAGAAA--ACTTAACCAAGCTCAGTC---A 206
*** * ** ** * ** *** ** * **
consensus_4999#0 TTTGATTGATAGGCTAGTTTTAATTAGAACGAGAAAGAGGAAATGGAGCGAAATAAAATA 480
consensus_4999#1 TTTGCACAACAA--CAAAAAAACGTAATGCCA-AAAGAAGAAATGAAGTAGCTAAACGTA 263
**** * * * * ** * * ***** ****** ** ** **
consensus_4999#0 AAAAAGCAAAAGAAGTAAACATACACACACACATATACAAGCCTAA--TCAAAAAGTAGG 538
consensus_4999#1 CATTTAAAAGAAAACTAAAGGAATAGATG-----ATAAAAGTCTATGTTTAAAAAATCGT 318
* ** * ** **** * * * *** *** *** * ***** * *
consensus_4999#0 TATAAAGAGATTGAAATAATGGAAGTAAGAAGAAGGAAAGAAAGGAAAGTAGAAATAAAT 598
consensus_4999#1 AACATTAACATTTTAA-AATGCCAAAACCCTTACTAAAAAAACATGCAATGATGCTAAAC 377
* * * *** ** **** * * * *** ** * * ****
consensus_4999#0 GGAATTTGTTTNTAAATATACAAATAGAAGATAGCAAAACAAAACAAAGGAAACATATCA 658
consensus_4999#1 ---ATTTGTTAAC--ATGTATAAGAAAGATGTGGAAACTTAGAGTAAACAAAACAAAAC- 431
******* ** ** ** * * * * ** * * *** ***** * *
consensus_4999#0 CACACACACATACAACGCGACACATATTCGCAC-TGCGGTCTTCCCCACTATCTAATGGG 717
consensus_4999#1 CAAAC-CAAACAAAACAAAACCACAACCCAAGTGTGTGTGCGTGTGTGTGTGGTCGTAAG 490
** ** ** * * *** ** * * ** * * * * * *
consensus_4999#0 ATGGGAA-GCAAAAACAGCTAAACTGTTGTTACATATATGTGTGTGTATGTGTCGGTGTG 776
consensus_4999#1 GTGTGAGTGTATGCGTGGTGGAGGTGTTGGTTGGTTGGAGCAGGAGGAGCAGGAGGAGCA 550
** ** * * * * ***** * * * * * * * ** *
consensus_4999#0 TGTCAGACAAACAATGATTAATTTTAGTCTTATCTATGTATTTACCTAATTAAATATATT 836
consensus_4999#1 AACAAGGATAACAAAATATACAGCCAGTCAT-TATAT-TGATTATGTATGAAAACAAACT 608
** ***** ** **** * * *** * *** ** *** * * *
consensus_4999#0 GCCGTTAATT 846
consensus_4999#1 G--------- 609
*
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| Copyright Wed Dec 3 12:11:56 CET 2003 Hubert Wassner (hubert.wassner@noos.fr) | ||||